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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Young, K."

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Search Summary

This query matches 28 Structures.

Refinements

Structure Determination Methodology

experimental (28)

Scientific Name of Source Organism

	Pseudomonas aeruginosa (10)
	Homo sapiens (7)
	Escherichia coli (4)
	Klebsiella pneumoniae (4)
	Mycobacterium tuberculosis (1)
	Pseudomonas aeruginosa PAO1 (1)
	Staphylococcus epidermidis RP62A (1)
	synthetic construct (1)

Taxonomy

	Bacteria (21)
	Eukaryota (7)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (27)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

	Protein (28)
	NA-hybrid (1)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (12)
	1.5 - 2.0 (4)
	2.0 - 2.5 (3)
	2.5 - 3.0 (8)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (5)
	2010 - 2014 (6)
	2020 - 2024 (16)

Enzyme Classification Name

	Hydrolases (14)
	Transferases (6)

Symmetry Type

	Asymmetric (24)
	Cyclic (4)

SCOP Classification

	Alpha and beta proteins (a+b) (6)
	Alpha and beta proteins (a/b) (5)
	Multi-domain proteins (alpha and beta) (5)
	Artifacts (2)
	Small proteins (1)
	All alpha proteins (1)

AllSelected

1 to 25 of 28 Structures

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1GHQ \| pdb_00001ghq	Download File View File

CR2-C3D COMPLEX STRUCTURE

Szakonyi, G., Guthridge, J.M., Li, D., Holers, V.M., Chen, X.S.

(2001) Science 292: 1725-1728

Released	2001-06-13
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Homo sapiens
Macromolecule	COMPLEMENT C3 (protein) CR2/CD121/C3D/EPSTEIN-BARR VIRUS RECEPTOR (protein)
Unique Ligands	NDG, ZN

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2GFS \| pdb_00002gfs	Download File View File

P38 Kinase Crystal Structure in complex with RO3201195

Harris, S.F., Bertrand, J., Villasenor, A.

(2006) J Med Chem 49: 1562-1575

Released	2006-04-18
Method	X-RAY DIFFRACTION 1.752 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-Activated Protein Kinase 14 (protein)
Unique Ligands	PQB

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2GFV \| pdb_00002gfv	Download File View File

Structure of E. coli FabF (KASII) C163Q mutant

Soisson, S.M., Parthasarathy, G.

(2006) Nature 441: 358-361

Released	2006-05-23
Method	X-RAY DIFFRACTION 2.29 Å
Organisms	Escherichia coli
Macromolecule	3-oxoacyl-[acyl-carrier-protein] synthase 2 (protein)

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2GFW \| pdb_00002gfw	Download File View File

Structure of wild type E. coli FabF (KASII)

Soisson, S.M., Parthasarathy, G.

(2006) Nature 441: 358-361

Released	2006-05-23
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	3-oxoacyl-[acyl-carrier-protein] synthase 2 (protein)

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2GFX \| pdb_00002gfx	Download File View File

Structure of E. coli FabF(C163Q) in complex with Platensimycin

Soisson, S.M., Parthasarathy, G.

(2006) Nature 441: 358-361

Released	2006-05-23
Method	X-RAY DIFFRACTION 2.59 Å
Organisms	Escherichia coli
Macromolecule	3-oxoacyl-[acyl-carrier-protein] synthase 2 (protein)
Unique Ligands	PMN

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2GFY \| pdb_00002gfy	Download File View File

Structure of E. coli FabF(K335A) mutant with covalently linked dodecanoic acid

Soisson, S.M., Parthasarathy, G.

(2006) Nature 441: 358-361

Released	2006-05-23
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Escherichia coli
Macromolecule	3-oxoacyl-[acyl-carrier-protein] synthase 2 (protein)
Unique Ligands	DAO

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2WZX \| pdb_00002wzx	Download File View File

AMP-C BETA-LACTAMASE (PSEUDOMONAS AERUGINOSA)IN COMPLEX WITH compound M-02

Fitzgerald, P.M.D., Sharma, N., Lu, J.

(2010) Bioorg Med Chem Lett 20: 918

Released	2010-01-12
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	BETA-LACTAMASE (protein)
Unique Ligands	CL, ZX0

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2WZZ \| pdb_00002wzz	Download File View File

AMP-C BETA-LACTAMASE (PSEUDOMONAS AERUGINOSA)IN COMPLEX WITH compound M-03

Fitzgerald, P.M.D., Sharma, N., Lu, J.

(2010) Bioorg Med Chem Lett 20: 918

Released	2010-01-12
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	BETA-LACTAMASE (protein)
Unique Ligands	CL, ZX1

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3S1Y \| pdb_00003s1y	Download File View File

AMP-C BETA-LACTAMASE (PSEUDOMONAS AERUGINOSA) in complex with a beta-lactamase inhibitor

Scapin, G., Lu, J., Fitzgerald, P.M.D., Sharma, N.

(2011) Bioorg Med Chem Lett 21: 4267-4270

Released	2011-06-29
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Beta-lactamase (protein)
Unique Ligands	CL, IPA, S1Y

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3S22 \| pdb_00003s22	Download File View File

AMP-C BETA-LACTAMASE (PSEUDOMONAS AERUGINOSA) in complex with an inhibitor

Scapin, G., Lu, J., Fitzgerald, P.M.D., Sharma, N.

(2011) Bioorg Med Chem Lett 21: 4267-4270

Released	2011-06-29
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Beta-lactamase (protein)
Unique Ligands	3S2, CL

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4M8I \| pdb_00004m8i	Download File View File

1.43 Angstrom resolution crystal structure of cell division protein FtsZ (ftsZ) from Staphylococcus epidermidis RP62A in complex with GDP

Halavaty, A.S., Minasov, G., Winsor, J., Dubrovska, I., Filippova, E.V., Olsen, D.B., Therien, A., Shuvalova, L., Young, K., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2013-09-04
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Staphylococcus epidermidis RP62A
Macromolecule	Cell division protein FtsZ (protein)
Unique Ligands	GDP, SO4

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4NK3 \| pdb_00004nk3	Download File View File

Amp-c beta-lactamase (pseudomonas aeruginosa) in complex with mk-7655

Scapin, G., Lu, J., Fitzgerald, P.M.D., Sharma, N.

(2014) Bioorg Med Chem Lett 24: 780-785

Released	2014-02-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Beta-lactamase (protein)
Unique Ligands	MK7

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6VN2 \| pdb_00006vn2	Download File View File

USP7 IN COMPLEX WITH LIGAND COMPOUND 18

Leger, P.R., Wustrow, D.J., Hu, D.X., Krapp, S., Maskos, K., Blaesse, M.

(2020) J Med Chem 63: 5398-5420

Released	2020-04-29
Method	X-RAY DIFFRACTION 2.93 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin carboxyl-terminal hydrolase 7 (protein)
Unique Ligands	ACT, R44

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6VN3 \| pdb_00006vn3	Download File View File

USP7 IN COMPLEX WITH LIGAND COMPOUND 23

Leger, P.R., Wustrow, D.J., Hu, D.X., Krapp, S., Maskos, K., Blaesse, M.

(2020) J Med Chem 63: 5398-5420

Released	2020-04-29
Method	X-RAY DIFFRACTION 2.73 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin carboxyl-terminal hydrolase 7 (protein)
Unique Ligands	R3Y

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6VN4 \| pdb_00006vn4	Download File View File

USP7 IN COMPLEX WITH LIGAND COMPOUND 1

Leger, P.R., Wustrow, D.J., Hu, D.X., Krapp, S., Maskos, K., Blaesse, M.

(2020) J Med Chem 63: 5398-5420

Released	2020-04-29
Method	X-RAY DIFFRACTION 2.69 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin carboxyl-terminal hydrolase 7 (protein)
Unique Ligands	R4D

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6VN5 \| pdb_00006vn5	Download File View File

USP7 IN COMPLEX WITH LIGAND COMPOUND 7

Leger, P.R., Wustrow, D.J., Hu, D.X., Krapp, S., Maskos, K., Blaesse, M.

(2020) J Med Chem 63: 5398-5420

Released	2020-04-29
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin carboxyl-terminal hydrolase 7 (protein)
Unique Ligands	R41

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6VN6 \| pdb_00006vn6	Download File View File

USP7 IN COMPLEX WITH LIGAND COMPOUND 14

Leger, P.R., Wustrow, D.J., Hu, D.X., Krapp, S., Maskos, K., Blaesse, M.

(2020) J Med Chem 63: 5398-5420

Released	2020-04-29
Method	X-RAY DIFFRACTION 2.99 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin carboxyl-terminal hydrolase 7 (protein)
Unique Ligands	R4J, ZN

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7PU7 \| pdb_00007pu7	Download File View File

DNA polymerase from M. tuberculosis

Borsellini, A., Lamers, M.H.

(2022) ACS Infect Dis 8: 612-625

Released	2022-02-23
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Mycobacterium tuberculosis synthetic construct
Macromolecule	DNA polymerase III subunit alpha (protein) Template (hybrid) primer (hybrid)
Unique Ligands	82W, ZN

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7UOX \| pdb_00007uox	Download File View File

NDM1-inhibitor co-structure

Scapin, G., Fischmann, T.O.

(2022) J Med Chem 65: 16234-16251

Released	2023-03-08
Method	X-RAY DIFFRACTION 0.99 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Metallo beta-lactamase (protein)
Unique Ligands	ACT, CA, CD, O0L, ZN

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7UOY \| pdb_00007uoy	Download File View File

NDM1-inhibitor co-structure

Scapin, G., Fischmann, T.O.

(2022) J Med Chem 65: 16234-16251

Released	2023-03-08
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Metallo beta-lactamase (protein)
Unique Ligands	CD, O0F, ZN

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7UP1 \| pdb_00007up1	Download File View File

NDM1-inhibitor co-structure

Scapin, G., Fischmann, T.O.

(2022) J Med Chem 65: 16234-16251

Released	2023-03-08
Method	X-RAY DIFFRACTION 1.11 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Metallo beta-lactamase (protein)
Unique Ligands	CD, NZR, ZN

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7UP2 \| pdb_00007up2	Download File View File

NDM1-inhibitor co-structure

Scapin, G., Fischmann, T.O.

(2022) J Med Chem 65: 16234-16251

Released	2023-03-08
Method	X-RAY DIFFRACTION 1.13 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Beta-lactamase VIM-1 (protein)
Unique Ligands	NZR, ZN

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7UP3 \| pdb_00007up3	Download File View File

NDM1-inhibitor co-structure

Scapin, G., Fischmann, T.O.

(2022) J Med Chem 65: 16234-16251

Released	2023-03-08
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Metallo beta-lactamase (protein)
Unique Ligands	CD, EPE, NZ0, ZN