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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Vale, R.D."

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Search Summary

This query matches 2,867 Structures.

Refinements

Structure Determination Methodology

experimental (2,867)

Scientific Name of Source Organism

	Homo sapiens (1,933)
	Severe acute respiratory syndrome coronavirus 2 (867)
	Escherichia coli K-12 (26)
	Porphyromonas gingivalis (17)
	Lama glama (10)
	Escherichia coli (9)
	Streptomyces rubiginosus (4)
	Methanocaldococcus jannaschii (3)
	Pseudomonas aeruginosa PAO1 (2)
	Rhodothermus marinus DSM 4252 (2)

More...

Taxonomy

	Eukaryota (1,935)
	Riboviria (867)
	Bacteria (62)
	Archaea (3)
	Eukaryota (eukaryotes) (1)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (2,861)
	ELECTRON MICROSCOPY (5)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (2,867)
	DNA (1)

Refinement Resolution (Å)

	0.5 - 1.0 (8)
	1.0 - 1.5 (923)
	1.5 - 2.0 (1,478)
	2.0 - 2.5 (354)
	2.5 - 3.0 (83)
	3.0 - 3.5 (14)
	3.5 - 4.0 (4)
	> 4.5 (2)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (16)
	2010 - 2014 (149)
	2015 - 2019 (1,503)
	2020 - 2024 (1,198)

Enzyme Classification Name

	Hydrolases (1,419)
	Oxidoreductases (373)
	Transferases (217)
	Ligases (21)
	Isomerases (19)
	Lyases (11)

Membrane Protein Annotation

	OPM (5)
	PDBTM (2)

Symmetry Type

	Asymmetric (2,003)
	Cyclic (811)
	Dihedral (62)
	Octahedral (5)
	Tetrahedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (469)
	Artifacts (554)
	Alpha and beta proteins (a/b) (313)
	All beta proteins (449)
	All alpha proteins (362)
	Small proteins (28)
	Multi-domain proteins (alpha and beta) (3)

AllSelected

1 to 25 of 2,867 Structures

Page 1 of 115

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1KY9 \| pdb_00001ky9	Download File View File

Crystal Structure of DegP (HtrA)

Krojer, T., Garrido-Franco, M., Huber, R., Ehrmann, M., Clausen, T.

(2002) Nature 416: 455-459

Released	2002-04-03
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	PROTEASE DO (protein)

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2AZN \| pdb_00002azn	Download File View File

X-RAY Structure of 2,5-diamino-6-ribosylamino-4(3h)-pyrimidinone 5-phosphate reductase

Chatwell, L., Bacher, A., Huber, R., Fischer, M., Krojer, T.

(2006) J Mol Biology 359: 1334-1351

Released	2006-08-29
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	Putative 5-amino-6-(5-phosphoribosylamino)uracil reductase (protein)
Unique Ligands	EPE, MA5, NAP

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2B98 \| pdb_00002b98	Download File View File

Crystal Structure of an archaeal pentameric riboflavin synthase

Ramsperger, A., Augustin, M., Schott, A.K., Gerhardt, S., Krojer, T., Eisenreich, W., Illarionov, B., Cushman, M., Bacher, A., Huber, R., Fischer, M.

(2006) J Biological Chem 281: 1224-1232

Released	2005-11-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	Riboflavin synthase (protein)

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2B99 \| pdb_00002b99	Download File View File

Crystal Structure of an archaeal pentameric riboflavin synthase Complex with a Substrate analog inhibitor

Ramsperger, A., Augustin, M., Schott, A.K., Gerhardt, S., Krojer, T., Eisenreich, W., Illarionov, B., Cushman, M., Bacher, A., Huber, R., Fischer, M.

(2006) J Biological Chem 281: 1224-1232

Released	2005-11-08
Method	X-RAY DIFFRACTION 2.22 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	Riboflavin synthase (protein)
Unique Ligands	RDL

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2NB1 \| pdb_00002nb1	Download File View File

P63/p73 hetero-tetramerisation domain

Gebel, J., Buchner, L., Loehr, F.M., Luh, L.M., Coutandin, D., Guentert, P., Doetsch, V.

(2016) Cell Death Differ 23: 1930-1940

Released	2016-12-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Tumor protein 63 (protein) Tumor protein p73 (protein)

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2R3U \| pdb_00002r3u	Download File View File

Crystal structure of the PDZ deletion mutant of DegS

Clausen, T., Kurzbauer, R.

(2007) Genes Dev 21: 2659-2670

Released	2007-11-27
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli
Macromolecule	Protease degS (protein)

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2R3Y \| pdb_00002r3y	Download File View File

Crystal structure of the DegS protease in complex with the YWF activating peptide

Clausen, T., Hasselblatt, H.

(2007) Genes Dev 21: 2659-2670

Released	2007-11-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	Protease degS (protein) Synthetic peptide YWF (protein)

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2VPJ \| pdb_00002vpj	Download File View File

Crystal structure of the Kelch domain of human KLHL12

Keates, T., Pike, A.C.W., Bullock, A.N., Salah, E., Filippakopoulos, P., Roos, A.K., von Delft, F., Savitsky, P., Weigelt, J., Edwards, A., Arrowsmith, C.H., Bountra, C., Knapp, S.

(2013) J Biological Chem 288: 7803

Released	2008-03-18
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	KELCH-LIKE PROTEIN 12 (protein)
Unique Ligands	ACT

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2WWY \| pdb_00002wwy	Download File View File

Structure of human RECQ-like helicase in complex with a DNA substrate

Pike, A.C.W., Zhang, Y., Schnecke, C., Chaikuad, A., Krojer, T., Cooper, C.D.O., von Delft, F., Arrowsmith, C.H., Weigelt, J., Edwards, A., Bountra, C., Gileadi, O.

(2015) Proc Natl Acad Sci U S A 112: 4286

Released	2009-12-29
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	ATP-DEPENDENT DNA HELICASE Q1 (protein) 5'-D(*DA DG DC DG DT DC DG DA DG DA DT DC DCP)-3' (nucleic acid) DNA OLIGO (27BP) (nucleic acid)
Unique Ligands	EDO, SO4, ZN

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2X1H \| pdb_00002x1h	Download File View File

Crystal structure of the human MGC45594 gene product in complex with raloxifene

Shafqat, N., Yue, W.W., Pike, A.C.W., Niesen, F., Ugochukwu, E., Krojer, T., Chaikuad, A., Smee, C., Arrowsmith, C., Weigelt, J., Edwards, A., Bountra, C., Oppermann, U.

To be published

Released	2010-11-10
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	ZINC-BINDING ALCOHOL DEHYDROGENASE DOMAIN-CONTAINING PROTEIN 2 (protein)
Unique Ligands	EDO, NAP, X1H

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2X4F \| pdb_00002x4f	Download File View File

The Crystal Structure of the human myosin light chain kinase LOC340156.

Muniz, J.R.C., Mahajan, P., Rellos, P., Fedorov, O., Shrestha, B., Wang, J., Elkins, J.M., Daga, N., Cocking, R., Chaikuad, A., Krojer, T., Ugochukwu, E., Yue, W., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Weigelt, J., Bountra, C., Gileadi, O., Knapp, S.

To be published

Released	2010-02-09
Method	X-RAY DIFFRACTION 2.67 Å
Organisms	Homo sapiens
Macromolecule	MYOSIN LIGHT CHAIN KINASE FAMILY MEMBER 4 (protein)
Unique Ligands	16X, 1PE, EDO, SO4

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2X57 \| pdb_00002x57	Download File View File

Crystal structure of the extracellular domain of human Vasoactive intestinal polypeptide receptor 2

Pike, A.C.W., Barr, A.J., Quigley, A., Burgess Brown, N., de Riso, A., Bullock, A., Berridge, G., Muniz, J.R.C., Chaikaud, A., Vollmar, M., Krojer, T., Ugochukwu, E., von Delft, F., Edwards, A., Arrowsmith, C.H., Weigelt, J., Bountra, C., Carpenter, E.P.

To be published

Released	2010-03-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	VASOACTIVE INTESTINAL POLYPEPTIDE RECEPTOR 2 (protein)

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2X7G \| pdb_00002x7g	Download File View File

Structure of human serine-arginine-rich protein-specific kinase 2 (SRPK2) bound to purvalanol B

Pike, A.C.W., Savitsky, P., Fedorov, O., Krojer, T., Ugochukwu, E., von Delft, F., Gileadi, O., Edwards, A., Arrowsmith, C.H., Weigelt, J., Bountra, C., Knapp, S.

To be published

Released	2010-04-14
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	UNCHARACTERIZED PROTEIN SRPK2 (protein)
Unique Ligands	ACT, EDO, PVB, SO4

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2XD7 \| pdb_00002xd7	Download File View File

Crystal structure of the macro domain of human core histone H2A

Vollmar, M., Phillips, C., Carpenter, E.P., Muniz, J.R.C., Krojer, T., Ugochukwu, E., von Delft, F., Bountra, C., Arrowsmith, C.H., Weigelt, J., Edwards, A., Gileadi, O.

To be published

Released	2010-05-19
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Homo sapiens
Macromolecule	CORE HISTONE MACRO-H2A.2 (protein)

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2XDP \| pdb_00002xdp	Download File View File

Crystal structure of the tudor domain of human JMJD2C

Yue, W.W., Gileadi, C., Krojer, T., Weisbach, H., Ugochukwu, E., Daniel, M., Phillips, C., Chaikuad, A., von Delft, F., Allerston, C., Arrowsmith, C., Weigelt, J., Edwards, A., Bountra, C., Oppermann, U.

To be published

Released	2010-06-09
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Homo sapiens
Macromolecule	LYSINE-SPECIFIC DEMETHYLASE 4C (protein)
Unique Ligands	SO4

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2XDV \| pdb_00002xdv	Download File View File

Crystal Structure of the Catalytic Domain of FLJ14393

Krojer, T., Muniz, J.R.C., Ng, S.S., Pilka, E., Guo, K., Pike, A.C.W., Filippakopoulos, P., Knapp, S., Kavanagh, K.L., Gileadi, O., Bunkoczi, G., Yue, W.W., Niesen, F., Sobott, F., Fedorov, O., Savitsky, P., Kochan, G., Daniel, M., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Weigelt, J., Bountra, C., Oppermann, U.

(2014) Nature 510: 422-426

Released	2010-05-26
Method	X-RAY DIFFRACTION 2.57 Å
Organisms	Homo sapiens
Macromolecule	MYC-INDUCED NUCLEAR ANTIGEN (protein)
Unique Ligands	CD, EDO, MN, NI, OGA

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2XIO \| pdb_00002xio	Download File View File

Structure of putative deoxyribonuclease TATDN1 isoform a

Muniz, J.R.C., Cocking, R., Puranik, S., Krojer, T., Raynor, J., Vollmar, M., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Weigelt, J., Bountra, C., Yue, W.W., Kavanagh, K.L., Oppermann, U.

To be published

Released	2010-07-14
Method	X-RAY DIFFRACTION 1.19 Å
Organisms	Homo sapiens
Macromolecule	PUTATIVE DEOXYRIBONUCLEASE TATDN1 (protein)
Unique Ligands	EDO, NA, NI

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2XN4 \| pdb_00002xn4	Download File View File

Crystal structure of the kelch domain of human KLHL2 (Mayven)

Canning, P., Hozjan, V., Cooper, C.D.O., Ayinampudi, V., Vollmar, M., Pike, A.C.W., von Delft, F., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Bullock, A.N.

(2013) J Biological Chem 288: 7803

Released	2010-08-18
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Homo sapiens
Macromolecule	KELCH-LIKE PROTEIN 2 (protein)
Unique Ligands	EDO, NA, SO4

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2XST \| pdb_00002xst	Download File View File

Crystal Structure of the Human Lipocalin 15

Muniz, J.R.C., Gileadi, C., Yue, W.W., Krojer, T., Ugochukwu, E., Phillips, C., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Weigelt, J., Bountra, C., Kavanagh, K.L., Oppermann, U.

To be published

Released	2010-10-13
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Homo sapiens
Macromolecule	LIPOCALIN 15 (protein)
Unique Ligands	EDO

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2XSX \| pdb_00002xsx	Download File View File

Crystal structure of human beta enolase ENOB

Vollmar, M., Krysztofinska, E., Chaikuad, A., Krojer, T., Cocking, R., von Delft, F., Bountra, C., Arrowsmith, C.H., Weigelt, J., Edwards, A., Yue, W.W., Oppermann, U.

To be published

Released	2010-11-10
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	BETA-ENOLASE (protein)
Unique Ligands	EDO, MG, PO4

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2XVT \| pdb_00002xvt	Download File View File

Structure of the extracellular domain of human RAMP2

Quigley, A., Pike, A.C.W., Burgess-Brown, N., Krojer, T., Shrestha, L., Goubin, S., Kim, J., Das, S., Muniz, J.R.C., Canning, P., Chaikuad, A., Vollmar, M., von Delft, F., Arrowsmith, C.H., Weigelt, J., Edwards, A.M., Bountra, C., Barr, A.J., Carpenter, E.P.

To be published

Released	2010-12-29
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	RECEPTOR ACTIVITY-MODIFYING PROTEIN 2 (protein)
Unique Ligands	CA

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2XXZ \| pdb_00002xxz	Download File View File

Crystal structure of the human JMJD3 jumonji domain

Che, K.H., Yue, W.W., Krojer, T., Muniz, J.R.C., Ng, S.S., Tumber, A., Daniel, M., Burgess-Brown, N., Savitsky, P., Ugochukwu, E., Filippakopoulos, P., Arrowsmith, C., Weigelt, J., Edwards, A., Bountra, C., Oppermann, U.

To be published

Released	2010-11-24
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	LYSINE-SPECIFIC DEMETHYLASE 6B (protein)
Unique Ligands	8XQ, EDO, NA, NI

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2XZZ \| pdb_00002xzz	Download File View File

Crystal structure of the human transglutaminase 1 beta-barrel domain

Vollmar, M., Krysztofinska, E., Krojer, T., Yue, W.W., Cooper, C., Kavanagh, K., Allerston, C., Chaikuad, A., von Delft, F., Arrowsmith, C.H., Weigelt, J., Edwards, A., Bountra, C., Oppermann, U.

To be published

Released	2011-01-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE K (protein)

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2Y05 \| pdb_00002y05	Download File View File

Crystal structure of human leukotriene B4 12-hydroxydehydrogenase in complex with NADP and raloxifene

Yue, W.W., Shafqat, N., Krojer, T., Pike, A.C.W., von Delft, F., Sethi, R., Savitsky, P., Johansson, C., Arrowsmith, C., Weigelt, J., Edwards, A., Bountra, C., Oppermann, U.

To be published

Released	2011-01-26
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	PROSTAGLANDIN REDUCTASE 1 (protein)
Unique Ligands	CL, EDO, NAP, RAL

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2Y1H \| pdb_00002y1h	Download File View File

Crystal structure of the human TatD-domain protein 3 (TATDN3)

Muniz, J.R.C., Puranik, S., Krojer, T., Yue, W.W., Ugochukwu, E., Filippakopoulos, P., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Weigelt, J., Bountra, C., Kavanagh, K.L., Oppermann, U.

To be published

Released	2010-12-29
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	PUTATIVE DEOXYRIBONUCLEASE TATDN3 (protein)
Unique Ligands	EDO, NI, PO4, ZN

1 to 25 of 2,867 Structures

Page 1 of 115

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1KY9 | pdb_00001ky9

2AZN | pdb_00002azn

2B98 | pdb_00002b98

2B99 | pdb_00002b99

2NB1 | pdb_00002nb1

2R3U | pdb_00002r3u

2R3Y | pdb_00002r3y

2VPJ | pdb_00002vpj

2WWY | pdb_00002wwy

2X1H | pdb_00002x1h

2X4F | pdb_00002x4f

2X57 | pdb_00002x57

2X7G | pdb_00002x7g

2XD7 | pdb_00002xd7

2XDP | pdb_00002xdp

2XDV | pdb_00002xdv

2XIO | pdb_00002xio

2XN4 | pdb_00002xn4

2XST | pdb_00002xst

2XSX | pdb_00002xsx

2XVT | pdb_00002xvt

2XXZ | pdb_00002xxz

2XZZ | pdb_00002xzz

2Y05 | pdb_00002y05

2Y1H | pdb_00002y1h