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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Thoma, R."

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Search Summary

This query matches 63 Structures.

Refinements

Structure Determination Methodology

experimental (63)

Scientific Name of Source Organism

	Homo sapiens (42)
	Mus musculus (15)
	Rattus norvegicus (7)
	Lama glama (6)
	Thermotoga maritima (4)
	Bos taurus (3)
	Plasmodium falciparum 3D7 (2)
	Tolypocladium inflatum (2)
	synthetic construct (2)
	Pyrobaculum aerophilum (1)

Taxonomy

	Eukaryota (58)
	Bacteria (4)
	other sequences (2)
	Archaea (1)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (60)
	ELECTRON MICROSCOPY (3)

Polymer Entity Type

Protein (63)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (11)
	1.5 - 2.0 (19)
	2.0 - 2.5 (21)
	2.5 - 3.0 (6)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)
	> 4.5 (2)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (8)
	2005 - 2009 (7)
	2010 - 2014 (34)
	2015 - 2019 (10)
	2020 - 2024 (3)

Enzyme Classification Name

	Hydrolases (31)
	Transferases (8)
	Isomerases (9)
	Lyases (3)
	Oxidoreductases (1)

Membrane Protein Annotation

	MemProtMD (1)
	PDBTM (1)
	OPM (1)

Symmetry Type

	Asymmetric (59)
	Cyclic (5)

SCOP Classification

	All beta proteins (20)
	Alpha and beta proteins (a+b) (16)
	Artifacts (13)
	Alpha and beta proteins (a/b) (15)
	All alpha proteins (6)

AllSelected

1 to 25 of 63 Structures

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1DL3 \| pdb_00001dl3	Download File View File

CRYSTAL STRUCTURE OF MUTUALLY GENERATED MONOMERS OF DIMERIC PHOSPHORIBOSYLANTRANILATE ISOMERASE FROM THERMOTOGA MARITIMA

Thoma, R., Hennig, M., Sterner, R., Kirschner, K.

(2000) Structure 8: 265-276

Released	1999-12-27
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Thermotoga maritima
Macromolecule	PROTEIN (PHOSPHORIBOSYLANTRANILATE ISOMERASE) (protein)
Unique Ligands	SO4

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1H5Y \| pdb_00001h5y	Download File View File

HisF protein from Pyrobaculum aerophilum

Banfield, M.J., Lott, J.S., McCarthy, A.A., Baker, E.N.

(2001) Acta Crystallogr D Biol Crystallogr 57: 1518

Released	2001-06-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pyrobaculum aerophilum
Macromolecule	HISF (protein)
Unique Ligands	GOL, PO4

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1LBM \| pdb_00001lbm	Download File View File

CRYSTAL STRUCTURE OF PHOSPHORIBOSYL ANTHRANILATE ISOMERASE (PRAI) IN COMPLEX WITH REDUCED 1-(O-CARBOXYPHENYLAMINO)-1-DEOXYRIBULOSE 5-PHOSPHATE (RCDRP)

Hennig, M., Sterner, R., Kirschner, K.

(2002) Biochemistry 41: 12032-12042

Released	2002-12-18
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Thermotoga maritima
Macromolecule	PHOSPHORIBOSYL ANTHRANILATE ISOMERASE (protein)
Unique Ligands	137

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1NU6 \| pdb_00001nu6	Download File View File

Crystal structure of human Dipeptidyl Peptidase IV (DPP-IV)

Hennig, M., Stihle, M., Thoma, R., Ruf, A.

(2003) Structure 11: 947-959

Released	2003-08-26
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Dipeptidyl peptidase IV (protein)
Unique Ligands	HG, NAG

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1NU8 \| pdb_00001nu8	Download File View File

Crystal structure of human dipeptidyl peptidase IV (DPP-IV) in complex with Diprotin A (IPI)

Thoma, R., Loeffler, B., Stihle, M., Huber, W., Ruf, A., Hennig, M.

(2003) Structure 11: 947-959

Released	2003-08-26
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	3-mer peptide (protein) Dipeptidyl peptidase IV (protein)
Unique Ligands	NAG

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1QO2 \| pdb_00001qo2	Download File View File

Crystal structure of N-((5'-phosphoribosyl)-formimino)-5-aminoimidazol-4-carboxamid ribonucleotid isomerase (EC 3.1.3.15, HisA)

Wilmanns, M., Lang, D., Thoma, R., Sterner, R.

(2000) Science 289: 1546

Released	2000-07-12
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Thermotoga maritima
Macromolecule	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (protein)

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1THF \| pdb_00001thf	Download File View File

CYCLASE SUBUNIT OF IMIDAZOLEGLYCEROLPHOSPHATE SYNTHASE FROM THERMOTOGA MARITIMA

Lang, D.A., Wilmanns, M.

(2000) Science 289: 1546-1550

Released	2000-07-14
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Thermotoga maritima
Macromolecule	HISF PROTEIN (protein)
Unique Ligands	PO4

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1W6J \| pdb_00001w6j	Download File View File

Structure of human OSC in complex with Ro 48-8071

Thoma, R., Schulz-Gasch, T., D'Arcy, B., Benz, J., Aebi, J., Dehmlow, H., Hennig, M., Ruf, A.

(2004) Nature 432: 118

Released	2004-10-29
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	LANOSTEROL SYNTHASE (protein)
Unique Ligands	BOG, C14, R71

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1W6K \| pdb_00001w6k	Download File View File

Structure of human OSC in complex with Lanosterol

Thoma, R., Schulz-Gasch, T., D'Arcy, B., Benz, J., Aebi, J., Dehmlow, H., Hennig, M., Ruf, A.

(2004) Nature 432: 118

Released	2004-10-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	LANOSTEROL SYNTHASE (protein)
Unique Ligands	BOG, LAN

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2BIT \| pdb_00002bit	Download File View File

Crystal structure of human cyclophilin D at 1.7 A resolution

Hennig, M., Thoma, R., Stihle, M., Schlatter, D.

(2005) Acta Crystallogr D Biol Crystallogr 61: 513-519

Released	2005-01-26
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Homo sapiens
Macromolecule	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (protein)

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2BIU \| pdb_00002biu	Download File View File

Crystal structure of human cyclophilin D at 1.7 A resolution, DMSO complex

Hennig, M., Thoma, R., Stihle, M., Schlatter, D.

(2005) Acta Crystallogr D Biol Crystallogr 61: 513-519

Released	2005-01-26
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Homo sapiens
Macromolecule	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (protein)
Unique Ligands	DMS

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2DEB \| pdb_00002deb	Download File View File

Crystal structure of rat carnitine palmitoyltransferase 2 in space group C2221

Rufer, A.C., Thoma, R., Benz, J., Stihle, M., Gsell, B., De Roo, E., Banner, D.W., Mueller, F., Chomienne, O., Hennig, M.

(2006) Structure 14: 713-723

Released	2007-02-10
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Rattus norvegicus
Macromolecule	Carnitine O-palmitoyltransferase II, mitochondrial (protein)
Unique Ligands	BOG, COA, PLM

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2FW3 \| pdb_00002fw3	Download File View File

Crystal structure of rat carnitine palmitoyltransferase 2 in complex with antidiabetic drug ST1326

Rufer, A.C., Thoma, R., Benz, J., Stihle, M., Gsell, B., De Roo, E., Banner, D.W., Mueller, F., Chomienne, O., Hennig, M.

(2006) Structure 14: 713-723

Released	2007-02-01
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Rattus norvegicus
Macromolecule	Carnitine O-palmitoyltransferase II, mitochondrial (protein)
Unique Ligands	BUI

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2FYO \| pdb_00002fyo	Download File View File

Crystal structure of rat carnitine palmitoyltransferase 2 in space group P43212

Rufer, A.C., Thoma, R., Benz, J., Stihle, M., Gsell, B., De Roo, E., Banner, D.W., Mueller, F., Chomienne, O., Hennig, M.

(2006) Structure 14: 713-723

Released	2007-02-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Rattus norvegicus
Macromolecule	Carnitine O-palmitoyltransferase II, mitochondrial (protein)

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2RCU \| pdb_00002rcu	Download File View File

Crystal structure of rat carnitine palmitoyltransferase 2 in complex with r-3-(hexadecanoylamino)-4-(trimethylazaniumyl)butanoate

Rufer, A.C., Benz, J., Chomienne, O., Thoma, R., Hennig, M.

(2007) FEBS Lett 581: 3247-3252

Released	2007-10-16
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Rattus norvegicus
Macromolecule	Carnitine O-palmitoyltransferase 2 (protein)
Unique Ligands	BOG, BUJ

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2XU1 \| pdb_00002xu1	Download File View File

CATHEPSIN L WITH A NITRILE INHIBITOR

Banner, D.W., Benz, J.M., Steinbacher, S., Haap, W.

(2011) Angew Chem Int Ed Engl 50: 314

Released	2011-01-12
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Homo sapiens
Macromolecule	CATHEPSIN L1 (protein)
Unique Ligands	424

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2XU3 \| pdb_00002xu3	Download File View File

CATHEPSIN L WITH A NITRILE INHIBITOR

Banner, D.W., Benz, J.M., Haap, W.

(2011) Angew Chem Int Ed Engl 50: 314

Released	2011-01-12
Method	X-RAY DIFFRACTION 0.9 Å
Organisms	Homo sapiens
Macromolecule	CATHEPSIN L1 (protein)
Unique Ligands	BTB, CL, XU3

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2XU4 \| pdb_00002xu4	Download File View File

CATHEPSIN L WITH A NITRILE INHIBITOR

Banner, D.W., Benz, J.M., Haap, W.

(2011) Angew Chem Int Ed Engl 50: 314

Released	2011-01-12
Method	X-RAY DIFFRACTION 1.12 Å
Organisms	Homo sapiens
Macromolecule	CATHEPSIN L1 (protein)
Unique Ligands	DJT, GOL

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2XU5 \| pdb_00002xu5	Download File View File

CATHEPSIN L WITH A NITRILE INHIBITOR

Banner, D.W., Benz, J.M., Haap, W.

(2011) Angew Chem Int Ed Engl 50: 314

Released	2011-01-12
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	CATHEPSIN L1 (protein)
Unique Ligands	FLC, GOL, XU5

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2YJ2 \| pdb_00002yj2	Download File View File

CATHEPSIN L WITH A NITRILE INHIBITOR

Banner, D.W., Benz, J.M., Haap, W.

(2011) ChemMedChem 6: 2048

Released	2011-11-23
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Homo sapiens
Macromolecule	CATHEPSIN L1 (protein)
Unique Ligands	GOL, YJ2

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2YJ8 \| pdb_00002yj8	Download File View File

CATHEPSIN L WITH A NITRILE INHIBITOR

Banner, D.W., Benz, J.M., Haap, W.

(2011) ChemMedChem 6: 2048

Released	2011-11-23
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Homo sapiens
Macromolecule	CATHEPSIN L1 (protein)
Unique Ligands	GOL, YJ8

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2YJ9 \| pdb_00002yj9	Download File View File

CATHEPSIN L WITH A NITRILE INHIBITOR

Banner, D.W., Benz, J.M., Haap, W.

(2011) ChemMedChem 6: 2048

Released	2011-11-23
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Homo sapiens
Macromolecule	CATHEPSIN L1 (protein)
Unique Ligands	GOL, YJ9

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2YJB \| pdb_00002yjb	Download File View File

CATHEPSIN L WITH A NITRILE INHIBITOR

Banner, D.W., Benz, J.M., Haap, W.

(2011) ChemMedChem 6: 2048

Released	2011-11-23
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	CATHEPSIN L1 (protein)
Unique Ligands	GOL, YJ9

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2YJC \| pdb_00002yjc	Download File View File

CATHEPSIN L WITH A NITRILE INHIBITOR

Banner, D.W., Benz, J.M., Haap, W.

(2011) ChemMedChem 6: 2048

Released	2011-11-23
Method	X-RAY DIFFRACTION 1.14 Å
Organisms	Homo sapiens
Macromolecule	CATHEPSIN L1 (protein)
Unique Ligands	424

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3H52 \| pdb_00003h52	Download File View File

Crystal structure of the antagonist form of human glucocorticoid receptor

Schoch, G.A., Benz, J., D'Arcy, B., Stihle, M., Burger, D., Thoma, R., Ruf, A.

(2010) J Mol Biology 395: 568-577

Released	2009-12-01
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Glucocorticoid receptor (protein) Nuclear receptor corepressor 1 (protein)
Unique Ligands	486, GOL

1 to 25 of 63 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1DL3 | pdb_00001dl3

1H5Y | pdb_00001h5y

1LBM | pdb_00001lbm

1NU6 | pdb_00001nu6

1NU8 | pdb_00001nu8

1QO2 | pdb_00001qo2

1THF | pdb_00001thf

1W6J | pdb_00001w6j

1W6K | pdb_00001w6k

2BIT | pdb_00002bit

2BIU | pdb_00002biu

2DEB | pdb_00002deb

2FW3 | pdb_00002fw3

2FYO | pdb_00002fyo

2RCU | pdb_00002rcu

2XU1 | pdb_00002xu1

2XU3 | pdb_00002xu3

2XU4 | pdb_00002xu4

2XU5 | pdb_00002xu5

2YJ2 | pdb_00002yj2

2YJ8 | pdb_00002yj8

2YJ9 | pdb_00002yj9

2YJB | pdb_00002yjb

2YJC | pdb_00002yjc

3H52 | pdb_00003h52