RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Smirnova, E."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 12 Structures.

Refinements

Structure Determination Methodology

experimental (12)

Scientific Name of Source Organism

	Homo sapiens (7)
	Mycobacterium tuberculosis (2)
	Escherichia coli O111:H- str. 11128 (1)
	Komagataella phaffii GS115 (1)
	Pseudomonas putida KT2440 (1)
	Xenopus laevis (1)

Taxonomy

	Eukaryota (8)
	Bacteria (4)

Experimental Method

	X-RAY DIFFRACTION (5)
	ELECTRON MICROSCOPY (4)
	SOLUTION NMR (3)

Polymer Entity Type

	Protein (12)
	DNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (1)
	2.5 - 3.0 (4)
	3.0 - 3.5 (1)
	3.5 - 4.0 (1)

Release Date

	1995 - 1999 (1)
	2010 - 2014 (6)
	2015 - 2019 (1)
	2020 - 2024 (4)

Enzyme Classification Name

	Hydrolases (4)
	Transferases (4)

Symmetry Type

	Asymmetric (8)
	Cyclic (3)
	Dihedral (3)

SCOP Classification

	Alpha and beta proteins (a/b) (3)
	All beta proteins (2)
	All alpha proteins (2)

AllSelected

1 to 12 of 12 Structures

Page 1 of 1

Sort by

Explore in 3D

1RRP \| pdb_00001rrp	Download File View File

STRUCTURE OF THE RAN-GPPNHP-RANBD1 COMPLEX

Vetter, I.R., Nowak, C., Nishimoto, T., Kuhlmann, J., Wittinghofer, A.

(1999) Nature 398: 39-46

Released	1999-05-18
Method	X-RAY DIFFRACTION 2.96 Å
Organisms	Homo sapiens
Macromolecule	NUCLEAR PORE COMPLEX PROTEIN NUP358 (protein) RAN (protein)
Unique Ligands	GNP, MG

Explore in 3D

2M38 \| pdb_00002m38	Download File View File

PTB domain of AIDA1

Donaldson, L.

(2013) PLoS One 8: e65605-e65605

Released	2013-01-23
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Ankyrin repeat and sterile alpha motif domain-containing protein 1B (protein)

Explore in 3D

2M7A \| pdb_00002m7a	Download File View File

Enteropathogenic Escherichia coli 0111:H- str. 11128 ORF EC0111_1119 similar to bacteriophage lambda ea8.5

Donaldson, L.W.F.

(2013) Biochemistry 52: 3612-3614

Released	2013-06-12
Method	SOLUTION NMR
Organisms	Escherichia coli O111:H- str. 11128
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	ZN

Explore in 3D

2M7B \| pdb_00002m7b	Download File View File

ORF PP_3909 from Pseudomonas putida KT2440 encoding a protein similar to bacteriophage lambda ea8.5

Donaldson, L.W.F.

(2013) Biochemistry 52: 3612-3614

Released	2013-06-12
Method	SOLUTION NMR
Organisms	Pseudomonas putida KT2440
Macromolecule	uncharacterized protein (protein)
Unique Ligands	ZN

Explore in 3D

3UC5 \| pdb_00003uc5	Download File View File

Phosphopantetheine adenylyltransferase from Mycobacterium tuberculosis complexed with ATP

Timofeev, V.I., Smirnova, E.A., Chupova, L.A., Esipov, R.S., Kuranova, I.P.

(2012) Acta Crystallogr D Biol Crystallogr 68: 1660-1670

Released	2012-11-07
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Phosphopantetheine adenylyltransferase (protein)
Unique Ligands	ATP

Explore in 3D

4E1A \| pdb_00004e1a	Download File View File

Phosphopantetheine adenylyltransferase from Mycobacterium tuberculosis at 1.62A resolution

Timofeev, V.I., Smirnova, E.A., Chupova, L.A., Esipov, R.S., Kuranova, I.P.

(2012) Acta Crystallogr D Biol Crystallogr 68: 1660-1670

Released	2012-11-21
Method	X-RAY DIFFRACTION 1.62 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Phosphopantetheine adenylyltransferase (protein)
Unique Ligands	GOL

Explore in 3D

4IS7 \| pdb_00004is7	Download File View File

Crystal Structure of the CASKIN2 SAM Domain Tandem

Donaldson, L.W., Kwan, J.J.

To be published

Released	2014-02-05
Method	X-RAY DIFFRACTION 2.751 Å
Organisms	Homo sapiens
Macromolecule	Caskin-2 (protein)

Explore in 3D

5L1M \| pdb_00005l1m	Download File View File

CASKIN2 SAM domain tandem

Donaldson, L.W., Kwan, J.J., Saridakis, V.

(2016) Cell Commun Signal 14: 17-17

Released	2016-08-10
Method	X-RAY DIFFRACTION 2.751 Å
Organisms	Homo sapiens
Macromolecule	Caskin-2 (protein)

Explore in 3D

7ZVW \| pdb_00007zvw	Download File View File

NuA4 Histone Acetyltransferase Complex

Schultz, P., Ben-Shem, A., Frechard, A.

(2023) Nat Struct Mol Biol 30: 1337-1345

Released	2023-05-31
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Komagataella phaffii GS115
Macromolecule	Unique protein chains: 6
Unique Ligands	ATP, MG

Explore in 3D

8OF4 \| pdb_00008of4	Download File View File

Nucleosome Bound human SIRT6 (Composite)

Smirnova, E., Bignon, E., Schultz, P., Papai, G., Ben-Shem, A.

(2024) Elife 12:

Released	2023-08-09
Method	ELECTRON MICROSCOPY 2.94 Å
Organisms	Homo sapiens Xenopus laevis
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 2
Unique Ligands	ZN

Explore in 3D

8QR1 \| pdb_00008qr1	Download File View File

Cryo-EM structure of the human Tip60 complex

Li, C., Smirnova, E., Schnitzler, C., Crucifix, C., Concordet, J.P., Brion, A., Poterszman, A., Schultz, P., Papai, G., Ben-Shem, A.

(2024) Nature 635: 764-769

Released	2024-08-07
Method	ELECTRON MICROSCOPY 2.4 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 8

Explore in 3D

8QRI \| pdb_00008qri	Download File View File

TRRAP and EP400 in the human Tip60 complex

Li, C., Smirnova, E., Schnitzler, C., Crucifix, C., Concordet, J.P., Brion, A., Poterszman, A., SChultz, P., Papai, G., Ben-Shem, A.

(2024) Nature 635: 764-769

Released	2024-08-07
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens
Macromolecule	E1A-binding protein p400 (protein) Transformation/transcription domain-associated protein (protein)

1 to 12 of 12 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1RRP | pdb_00001rrp

STRUCTURE OF THE RAN-GPPNHP-RANBD1 COMPLEX

2M38 | pdb_00002m38

PTB domain of AIDA1

2M7A | pdb_00002m7a

Enteropathogenic Escherichia coli 0111:H- str. 11128 ORF EC0111_1119 similar to bacteriophage lambda ea8.5

2M7B | pdb_00002m7b

ORF PP_3909 from Pseudomonas putida KT2440 encoding a protein similar to bacteriophage lambda ea8.5

3UC5 | pdb_00003uc5

Phosphopantetheine adenylyltransferase from Mycobacterium tuberculosis complexed with ATP

4E1A | pdb_00004e1a

Phosphopantetheine adenylyltransferase from Mycobacterium tuberculosis at 1.62A resolution

4IS7 | pdb_00004is7

Crystal Structure of the CASKIN2 SAM Domain Tandem

5L1M | pdb_00005l1m

CASKIN2 SAM domain tandem

7ZVW | pdb_00007zvw

NuA4 Histone Acetyltransferase Complex

8OF4 | pdb_00008of4

Nucleosome Bound human SIRT6 (Composite)

8QR1 | pdb_00008qr1

Cryo-EM structure of the human Tip60 complex

8QRI | pdb_00008qri

TRRAP and EP400 in the human Tip60 complex

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1RRP | pdb_00001rrp

2M38 | pdb_00002m38

2M7A | pdb_00002m7a

2M7B | pdb_00002m7b

3UC5 | pdb_00003uc5

4E1A | pdb_00004e1a

4IS7 | pdb_00004is7

5L1M | pdb_00005l1m

7ZVW | pdb_00007zvw

8OF4 | pdb_00008of4

8QR1 | pdb_00008qr1

8QRI | pdb_00008qri