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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Schouten, S."

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Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Sulfolobus monocaudavirus SMV1 (12)
	Aeropyrum pernix (1)
	Agrobacterium fabrum str. C58 (1)
	Captovirus AFV1 (1)
	Pyrobaculum calidifontis (1)
	Sulfolobus filamentous virus 1 (1)
	Sulfolobus polyhedral virus 1 (1)

Taxonomy

	Viruses incertae sedis (13)
	Adnaviria (2)
	Archaea (2)
	Bacteria (1)

Experimental Method

ELECTRON MICROSCOPY (18)

Polymer Entity Type

	Protein (18)
	DNA (2)

Refinement Resolution (Å)

	3.0 - 3.5 (1)
	3.5 - 4.0 (8)
	4.0 - 4.5 (6)
	> 4.5 (3)

Release Date

	2015 - 2019 (3)
	2020 - 2024 (15)

Membrane Protein Annotation

OPM (3)

Symmetry Type

	Helical (16)
	Cyclic (1)
	Icosahedral (1)

AllSelected

1 to 18 of 18 Structures

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5W7G \| pdb_00005w7g	Download File View File

An envelope of a filamentous hyperthermophilic virus carries lipids in a horseshoe conformation

Kasson, P., DiMaio, F., Yu, X., Lucas-Staat, S., Krupovic, M., Schouten, S., Prangishvili, D., Egelman, E.

(2017) Elife 6:

Released	2017-07-19
Method	ELECTRON MICROSCOPY 4.5 Å
Organisms	Captovirus AFV1
Macromolecule	ORF132 (protein) ORF140 (protein) DNA (253-MER) (nucleic acid)

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6D5F \| pdb_00006d5f	Download File View File

Cryo-EM reconstruction of membrane-enveloped filamentous virus SFV1 (Sulfolobus filamentous virus 1)

Wang, F., Osinski, T., Liu, Y., Krupovic, M., Prangishvili, D., Egelman, E.H.

(2018) Nat Commun 9: 3360-3360

Released	2018-08-29
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Sulfolobus filamentous virus 1
Macromolecule	Fimbrial protein (protein) DNA (336-MER) (nucleic acid)

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6OJ0 \| pdb_00006oj0	Download File View File

Cryo-EM reconstruction of Sulfolobus polyhedral virus 1 (SPV1)

Wang, F., Liu, Y., Conway, J.F., Krupovic, M., Prangishvili, D., Egelman, E.H.

(2019) Proc Natl Acad Sci U S A 116: 22591-22597

Released	2019-10-02
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Sulfolobus polyhedral virus 1
Macromolecule	Structural protein VP4 (protein) Uncharacterized protein (protein)

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7RO2 \| pdb_00007ro2	Download File View File

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 1

Wang, F., Cvirkaite-Krupovic, V., Krupovic, M., Egelman, E.H.

(2022) Cell 185: 1297

Released	2022-03-30
Method	ELECTRON MICROSCOPY 5.1 Å
Organisms	Sulfolobus monocaudavirus SMV1
Macromolecule	major capsid protein (protein)

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7RO3 \| pdb_00007ro3	Download File View File

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 2

Wang, F., Cvirkaite-Krupovic, V., Krupovic, M., Egelman, E.H.

(2022) Cell 185: 1297

Released	2022-03-30
Method	ELECTRON MICROSCOPY 4.8 Å
Organisms	Sulfolobus monocaudavirus SMV1
Macromolecule	major capsid protein (protein)

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7RO4 \| pdb_00007ro4	Download File View File

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 3

Wang, F., Cvirkaite-Krupovic, V., Krupovic, M., Egelman, E.H.

(2022) Cell 185: 1297

Released	2022-03-30
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Sulfolobus monocaudavirus SMV1
Macromolecule	major capsid protein (protein)

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7RO5 \| pdb_00007ro5	Download File View File

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 4

Wang, F., Cvirkaite-Krupovic, V., Krupovic, M., Egelman, E.H.

(2022) Cell 185: 1297

Released	2022-03-30
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Sulfolobus monocaudavirus SMV1
Macromolecule	major capsid protein (protein)

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7RO6 \| pdb_00007ro6	Download File View File

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 5

Wang, F., Cvirkaite-Krupovic, V., Krupovic, M., Egelman, E.H.

(2022) Cell 185: 1297

Released	2022-03-30
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Sulfolobus monocaudavirus SMV1
Macromolecule	major capsid protein (protein)

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7ROB \| pdb_00007rob	Download File View File

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 6

Wang, F., Cvirkaite-Krupovic, V., Krupovic, M., Egelman, E.H.

(2022) Cell 185: 1297

Released	2022-03-30
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Sulfolobus monocaudavirus SMV1
Macromolecule	major capsid protein (protein)

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7ROC \| pdb_00007roc	Download File View File

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 7

Wang, F., Cvirkaite-Krupovic, V., Krupovic, M., Egelman, E.H.

(2022) Cell 185: 1297-1307.e11

Released	2022-03-30
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Sulfolobus monocaudavirus SMV1
Macromolecule	major capsid protein (protein)

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7ROD \| pdb_00007rod	Download File View File

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 8

Wang, F., Cvirkaite-Krupovic, V., Krupovic, M., Egelman, E.H.

(2022) Cell 185: 1297-1307.e11

Released	2022-03-30
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Sulfolobus monocaudavirus SMV1
Macromolecule	major capsid protein (protein)

Explore in 3D

7ROE \| pdb_00007roe	Download File View File

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 9

Wang, F., Cvirkaite-Krupovic, V., Krupovic, M., Egelman, E.H.

(2022) Cell 185: 1297-1307.e11

Released	2022-03-30
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Sulfolobus monocaudavirus SMV1
Macromolecule	major capsid protein (protein)

Explore in 3D

7ROG \| pdb_00007rog	Download File View File

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 10

Wang, F., Cvirkaite-Krupovic, V., Krupovic, M., Egelman, E.H.

(2022) Cell 185: 1297-1307.e11

Released	2022-03-30
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Sulfolobus monocaudavirus SMV1
Macromolecule	major capsid protein (protein)

Explore in 3D

7ROH \| pdb_00007roh	Download File View File

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 11

Wang, F., Cvirkaite-Krupovic, V., Krupovic, M., Egelman, E.H.

(2022) Cell 185: 1297-1307.e11

Released	2022-03-30
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Sulfolobus monocaudavirus SMV1
Macromolecule	major capsid protein (protein)

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7ROI \| pdb_00007roi	Download File View File

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 12

Wang, F., Cvirkaite-Krupovic, V., Krupovic, M., Egelman, E.H.

(2022) Cell 185: 1297-1307.e11

Released	2022-03-30
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Sulfolobus monocaudavirus SMV1
Macromolecule	major capsid protein (protein)

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8DFT \| pdb_00008dft	Download File View File

Cryo-EM structure of conjugative pili from Pyrobaculum calidifontis

Beltran, L.C., Egelman, E.H.

(2023) Nat Commun 14: 666-666

Released	2023-03-22
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Pyrobaculum calidifontis
Macromolecule	Pilin protein (protein)
Unique Ligands	TT0

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8DFU \| pdb_00008dfu	Download File View File

Cryo-EM structure of conjugation pili from Aeropyrum pernix

Beltran, L.C., Egelman, E.H.

(2023) Nat Commun 14: 666-666

Released	2023-03-22
Method	ELECTRON MICROSCOPY 3.44 Å
Organisms	Aeropyrum pernix
Macromolecule	Pilin protein (protein)
Unique Ligands	RHR

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8EXH \| pdb_00008exh	Download File View File

Agrobacterium tumefaciens Tpilus

Beltran, L.C., Egelman, E.H.

(2023) Nat Commun 14: 666-666

Released	2023-03-22
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Agrobacterium fabrum str. C58
Macromolecule	Protein virB2 (protein)
Unique Ligands	X3D

1 to 18 of 18 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

5W7G | pdb_00005w7g

An envelope of a filamentous hyperthermophilic virus carries lipids in a horseshoe conformation

6D5F | pdb_00006d5f

Cryo-EM reconstruction of membrane-enveloped filamentous virus SFV1 (Sulfolobus filamentous virus 1)

6OJ0 | pdb_00006oj0

Cryo-EM reconstruction of Sulfolobus polyhedral virus 1 (SPV1)

7RO2 | pdb_00007ro2

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 1

7RO3 | pdb_00007ro3

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 2

7RO4 | pdb_00007ro4

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 3

7RO5 | pdb_00007ro5

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 4

7RO6 | pdb_00007ro6

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 5

7ROB | pdb_00007rob

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 6

7ROC | pdb_00007roc

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 7

7ROD | pdb_00007rod

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 8

7ROE | pdb_00007roe

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 9

7ROG | pdb_00007rog

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 10

7ROH | pdb_00007roh

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 11

7ROI | pdb_00007roi

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 12

8DFT | pdb_00008dft

Cryo-EM structure of conjugative pili from Pyrobaculum calidifontis

8DFU | pdb_00008dfu

Cryo-EM structure of conjugation pili from Aeropyrum pernix

8EXH | pdb_00008exh

Agrobacterium tumefaciens Tpilus

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Membrane Protein Annotation

Symmetry Type

5W7G | pdb_00005w7g

6D5F | pdb_00006d5f

6OJ0 | pdb_00006oj0

7RO2 | pdb_00007ro2

7RO3 | pdb_00007ro3

7RO4 | pdb_00007ro4

7RO5 | pdb_00007ro5

7RO6 | pdb_00007ro6

7ROB | pdb_00007rob

7ROC | pdb_00007roc

7ROD | pdb_00007rod

7ROE | pdb_00007roe

7ROG | pdb_00007rog

7ROH | pdb_00007roh

7ROI | pdb_00007roi

8DFT | pdb_00008dft

8DFU | pdb_00008dfu

8EXH | pdb_00008exh