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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Ross, A."

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Search Summary

This query matches 39 Structures.

Refinements

Structure Determination Methodology

experimental (39)

Scientific Name of Source Organism

	Homo sapiens (13)
	Byrnievirus HK97 (6)
	Human immunodeficiency virus 1 (4)
	Human poliovirus 1 Mahoney (4)
	Oryctolagus cuniculus (4)
	Cystovirus phi6 (3)
	Oshimavirus P2345 (3)
	Arabidopsis thaliana (2)
	Hepatitis B virus (2)
	Mus musculus (2)

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Taxonomy

	Eukaryota (21)
	Riboviria (14)
	Duplodnaviria (10)
	Bacteria (1)
	Monodnaviria (1)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (23)
	ELECTRON MICROSCOPY (15)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (39)
	DNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (4)
	2.0 - 2.5 (4)
	2.5 - 3.0 (2)
	3.0 - 3.5 (5)
	3.5 - 4.0 (6)
	4.0 - 4.5 (5)
	> 4.5 (10)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (6)
	2010 - 2014 (9)
	2015 - 2019 (17)
	2020 - 2024 (5)

Enzyme Classification Name

	Transferases (4)
	Hydrolases (1)
	Ligases (1)

Symmetry Type

	Asymmetric (15)
	Icosahedral (19)
	Cyclic (7)

SCOP Classification

	Alpha and beta proteins (a+b) (4)
	All beta proteins (5)
	Low resolution protein structures (1)
	Artifacts (3)
	Alpha and beta proteins (a/b) (2)

AllSelected

1 to 25 of 39 Structures

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1C5E \| pdb_00001c5e	Download File View File

BACTERIOPHAGE LAMBDA HEAD PROTEIN D

Yang, F., Forrer, P., Dauter, Z., Pluckthun, A., Wlodawer, A.

(2000) Nat Struct Biol 7: 230-237

Released	2000-03-08
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Lambdavirus lambda
Macromolecule	HEAD DECORATION PROTEIN (protein)
Unique Ligands	GOL

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1IF0 \| pdb_00001if0	Download File View File

PSEUDO-ATOMIC MODEL OF BACTERIOPHAGE HK97 PROCAPSID (PROHEAD II)

Conway, J.F., Wikoff, W.R., Cheng, N., Duda, R.L., Hendrix, R.W., Johnson, J.E., Steven, A.C.

(2001) Science 292: 744-748

Released	2001-05-02
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Byrnievirus HK97
Macromolecule	PROTEIN (MAJOR CAPSID PROTEIN GP5) (protein)

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1XYR \| pdb_00001xyr	Download File View File

Poliovirus 135S cell entry intermediate

Bubeck, D., Filman, D.J., Cheng, N., Steven, A.C., Hogle, J.M., Belnap, D.M.

(2005) J Virol 79: 7745-7755

Released	2005-08-02
Method	ELECTRON MICROSCOPY 11 Å
Organisms	Poliovirus 1
Macromolecule	Unique protein chains: 7

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2FRP \| pdb_00002frp	Download File View File

Bacteriophage HK97 Expansion Intermediate IV

Gan, L., Speir, J.A., Conway, J.F., Lander, G., Cheng, N., Firek, B.A., Hendrix, R.W., Duda, R.L., Liljas, L., Johnson, J.E.

(2006) Structure 14: 1655-1665

Released	2006-02-07
Method	X-RAY DIFFRACTION 7.5 Å
Organisms	Byrnievirus HK97
Macromolecule	Major capsid protein (protein)

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2FS3 \| pdb_00002fs3	Download File View File

Bacteriophage HK97 K169Y Head I

Gan, L., Speir, J.A., Conway, J.F., Lander, G., Cheng, N., Firek, B.A., Hendrix, R.W., Duda, R.L., Liljas, L., Johnson, J.E.

(2006) Structure 14: 1655-1665

Released	2006-02-07
Method	X-RAY DIFFRACTION 4.2 Å
Organisms	Byrnievirus HK97
Macromolecule	Major capsid protein (protein)

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2FSY \| pdb_00002fsy	Download File View File

Bacteriophage HK97 Pepsin-treated Expansion Intermediate IV

Gan, L., Speir, J.A., Conway, J.F., Lander, G., Cheng, N., Firek, B.A., Hendrix, R.W., Duda, R.L., Liljas, L., Johnson, J.E.

(2006) Structure 14: 1655-1665

Released	2006-02-07
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Byrnievirus HK97
Macromolecule	major capsid protein (protein)

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2FT1 \| pdb_00002ft1	Download File View File

Bacteriophage HK97 Head II

Gan, L., Speir, J.A., Conway, J.F., Lander, G., Cheng, N., Firek, B.A., Hendrix, R.W., Duda, R.L., Liljas, L., Johnson, J.E.

(2006) Structure 14: 1655-1665

Released	2006-02-07
Method	X-RAY DIFFRACTION 3.9 Å
Organisms	Byrnievirus HK97
Macromolecule	major capsid protein (protein)

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2FTE \| pdb_00002fte	Download File View File

Bacteriophage HK97 Expansion Intermediate IV

Gan, L., Speir, J.A., Conway, J.F., Lander, G., Cheng, N., Firek, B.A., Hendrix, R.W., Duda, R.L., Liljas, L., Johnson, J.E.

(2006) Structure 14: 1655-1665

Released	2006-02-07
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Byrnievirus HK97
Macromolecule	major capsid protein (protein)

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2LWF \| pdb_00002lwf	Download File View File

Structure of N-terminal domain of a plant Grx

Feng, Y.

(2013) Proc Natl Acad Sci U S A 110: 9565-9570

Released	2013-05-22
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	Monothiol glutaredoxin-S16, chloroplastic (protein)

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3IPZ \| pdb_00003ipz	Download File View File

Crystal structure of Arabidopsis monothiol glutaredoxin AtGRXcp

Li, L., Cheng, N., Wang, X.

(2010) Acta Crystallogr D Biol Crystallogr 66: 725-732

Released	2010-06-16
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Arabidopsis thaliana
Macromolecule	Monothiol glutaredoxin-S14, chloroplastic (protein)

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3J3O \| pdb_00003j3o	Download File View File

Conformational Shift of a Major Poliovirus Antigen Confirmed by Immuno-Cryogenic Electron Microscopy: 160S Poliovirus and C3-Fab Complex

Lin, J., Cheng, N., Hogle, J.M., Steven, A.C., Belnap, D.M.

(2013) J Immunol 191: 884-891

Released	2013-07-03
Method	ELECTRON MICROSCOPY 11.1 Å
Organisms	Human poliovirus 1 Mahoney Mus musculus unidentified
Macromolecule	Unique protein chains: 7
Unique Ligands	MYR, SPH

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3J3P \| pdb_00003j3p	Download File View File

Conformational Shift of a Major Poliovirus Antigen Confirmed by Immuno-Cryogenic Electron Microscopy: 135S Poliovirus and C3-Fab Complex

Lin, J., Cheng, N., Hogle, J.M., Steven, A.C., Belnap, D.M.

(2013) J Immunol 191: 884-891

Released	2013-07-03
Method	ELECTRON MICROSCOPY 9.1 Å
Organisms	Human poliovirus 1 Mahoney Mus musculus
Macromolecule	C3 antibody, heavy chain (protein) C3 antibody, light chain (protein) Protein VP1 (protein) Protein VP2 (protein) Protein VP3 (protein)

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3J6R \| pdb_00003j6r	Download File View File

Electron cryo-microscopy of Human Papillomavirus Type 16 capsid

Cardone, G., Moyer, A.L., Cheng, N., Thompson, C.D., Dvoretzky, I., Lowy, D.R., Schiller, J.T., Steven, A.C., Buck, C.B., Trus, B.L.

(2014) mBio 5: e01104-e01114

Released	2014-07-23
Method	ELECTRON MICROSCOPY 9.1 Å
Organisms	Human papillomavirus 16
Macromolecule	Major capsid protein L1 (protein)

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3J8F \| pdb_00003j8f	Download File View File

Cryo-EM reconstruction of poliovirus-receptor complex

Strauss, M., Filman, D.J., Belnap, D.M., Cheng, N., Noel, R.T., Hogle, J.M.

(2015) J Virol 89: 4143-4157

Released	2015-02-11
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Homo sapiens Human poliovirus 1 Mahoney
Macromolecule	Capsid protein VP1 (protein) Capsid protein VP2 (protein) Capsid protein VP3 (protein) Capsid protein VP4 (protein) Poliovirus receptor (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, FUC, NAG

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3J9F \| pdb_00003j9f	Download File View File

Poliovirus complexed with soluble, deglycosylated poliovirus receptor (Pvr) at 4 degrees C

Strauss, M., Filman, D.J., Belnap, D.M., Cheng, N., Noel, R.T., Hogle, J.M.

(2015) J Virol 89: 4143-4157

Released	2015-02-11
Method	ELECTRON MICROSCOPY 9 Å
Organisms	Homo sapiens Human poliovirus 1 Mahoney
Macromolecule	Unique protein chains: 7
Unique Ligands	NAG, PLM
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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4BTG \| pdb_00004btg	Download File View File

Coordinates of the bacteriophage phi6 capsid subunits (P1A and P1B) fitted into the cryoEM reconstruction of the procapsid at 4.4 A resolution

Nemecek, D., Boura, E., Wu, W., Cheng, N., Plevka, P., Qiao, J., Mindich, L., Heymann, J.B., Hurley, J.H., Steven, A.C.

(2013) Structure 21: 1374

Released	2013-08-14
Method	ELECTRON MICROSCOPY 4.4 Å
Organisms	Cystovirus phi6
Macromolecule	MAJOR INNER PROTEIN P1 (protein)

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4BTQ \| pdb_00004btq	Download File View File

Coordinates of the bacteriophage phi6 capsid subunits fitted into the cryoEM map EMD-1206

Nemecek, D., Boura, E., Wu, W., Cheng, N., Plevka, P., Qiao, J., Mindich, L., Heymann, J.B., Hurley, J.H., Steven, A.C.

(2013) Structure 21: 1374

Released	2013-12-11
Method	ELECTRON MICROSCOPY 7.5 Å
Organisms	Cystovirus phi6
Macromolecule	MAJOR INNER PROTEIN P1 (protein)

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4K7H \| pdb_00004k7h	Download File View File

Major capsid protein P1 of the Pseudomonas phage phi6

Boura, E., Nemecek, D., Plevka, P., Steven, C.A., Hurley, J.H.

(2013) Structure 21: 1374-1383

Released	2013-08-14
Method	X-RAY DIFFRACTION 3.5964 Å
Organisms	Cystovirus phi6
Macromolecule	Major inner protein P1 (protein)

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4PT2 \| pdb_00004pt2	Download File View File

Myxococcus xanthus encapsulin protein (EncA)

Fontana, J., Aksyuk, A.A., Steven, A.C., Hoiczyk, E.

(2014) EMBO J 33: 1896-1911

Released	2014-07-30
Method	ELECTRON MICROSCOPY 4.6 Å
Organisms	Myxococcus xanthus DK 1622
Macromolecule	Encapsulin protein (protein)

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4WUU \| pdb_00004wuu	Download File View File

Structure of ESK1 in complex with HLA-A*0201/WT1

Ataie, N.J., Ng, H.L.

(2016) J Mol Biology 428: 194-205

Released	2015-12-30
Method	X-RAY DIFFRACTION 3.047 Å
Organisms	Homo sapiens
Macromolecule	ARG-MET-PHE-PRO-ASN-ALA-PRO-TYR-LEU (protein) Beta-2-microglobulin (protein) ESK1 (protein) HLA class I histocompatibility antigen, A-2 alpha chain (protein) IMMUNOGLOBULIN HEAVY CHAIN (protein)

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5DHV \| pdb_00005dhv	Download File View File

HIV-1 Rev NTD dimers with variable crossing angles

DiMattia, M.A., Watts, N.R., Wingfield, P.T., Grimes, J.M., Stuart, D.I., Steven, A.C.

(2016) Structure 24: 1068-1080

Released	2016-06-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Human immunodeficiency virus 1 Oryctolagus cuniculus
Macromolecule	Anti-Rev Antibody Fab single-chain variable fragment, heavy chain (protein) Anti-Rev Antibody Fab single-chain variable fragment, light chain (protein) Protein Rev (protein)
Unique Ligands	CL

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5DHX \| pdb_00005dhx	Download File View File

HIV-1 Rev NTD dimers with variable crossing angles

DiMattia, M.A., Watts, N.R., Wingfield, P.T., Grimes, J.M., Stuart, D.I., Steven, A.C.

(2016) Structure 24: 1068-1080

Released	2016-06-22
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Human immunodeficiency virus 1 Oryctolagus cuniculus
Macromolecule	Anti-Rev Antibody Fab single-chain variable fragment, light chain,Anti-Rev Antibody Fab single-chain variable fragment, heavy chain (protein) Protein Rev (protein)

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5DHY \| pdb_00005dhy	Download File View File

HIV-1 Rev NTD dimers with variable crossing angles

DiMattia, M.A., Watts, N.R., Wingfield, P.T., Grimes, J.M., Stuart, D.I., Steven, A.C.

(2016) Structure 24: 1068-1080

Released	2016-06-22
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Human immunodeficiency virus 1 Oryctolagus cuniculus
Macromolecule	Anti-Rev Antibody Fab single-chain variable fragment, heavy chain (protein) Anti-Rev Antibody Fab single-chain variable fragment, light chain (protein) Protein Rev (protein)

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5DHZ \| pdb_00005dhz	Download File View File

HIV-1 Rev NTD dimers with variable crossing angles

DiMattia, M.A., Watts, N.R., Wingfield, P.T., Grimes, J.M., Stuart, D.I., Steven, A.C.

(2016) Structure 24: 1068-1080

Released	2016-06-29
Method	X-RAY DIFFRACTION 4.3 Å
Organisms	Human immunodeficiency virus 1 Oryctolagus cuniculus
Macromolecule	Anti-Rev Antibody Fab single-chain variable fragment, heavy chain (protein) Anti-Rev Antibody Fab single-chain variable fragment, light chain (protein) Protein Rev (protein)

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5EPK \| pdb_00005epk	Download File View File

Crystal Structure of chromodomain of CBX2 in complex with inhibitor UNC3866

Liu, Y., Tempel, W., Walker, J.R., Stuckey, J.I., Dickson, B.M., James, L.I., Frye, S.V., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

(2016) Nat Chem Biol 12: 180-187

Released	2015-12-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Chromobox protein homolog 2 (protein) unc3866 (protein)
Unique Ligands	UNX

1 to 25 of 39 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1C5E | pdb_00001c5e

1IF0 | pdb_00001if0

1XYR | pdb_00001xyr

2FRP | pdb_00002frp

2FS3 | pdb_00002fs3

2FSY | pdb_00002fsy

2FT1 | pdb_00002ft1

2FTE | pdb_00002fte

2LWF | pdb_00002lwf

3IPZ | pdb_00003ipz

3J3O | pdb_00003j3o

3J3P | pdb_00003j3p

3J6R | pdb_00003j6r

3J8F | pdb_00003j8f

3J9F | pdb_00003j9f

4BTG | pdb_00004btg

4BTQ | pdb_00004btq

4K7H | pdb_00004k7h

4PT2 | pdb_00004pt2

4WUU | pdb_00004wuu

5DHV | pdb_00005dhv

5DHX | pdb_00005dhx

5DHY | pdb_00005dhy

5DHZ | pdb_00005dhz

5EPK | pdb_00005epk