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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Prota, A.E."

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Search Summary

This query matches 2,429 Structures.

Refinements

Structure Determination Methodology

experimental (2,429)

Scientific Name of Source Organism

	Homo sapiens (494)
	Escherichia coli (148)
	Mus musculus (96)
	synthetic construct (93)
	Mycobacterium tuberculosis H37Rv (80)
	Escherichia coli K-12 (56)
	Influenza A virus (44)
	Saccharomyces cerevisiae (38)
	Haemophilus influenzae Rd KW20 (37)
	Bos taurus (34)

More...

Taxonomy

	Bacteria (1,032)
	Eukaryota (927)
	Riboviria (302)
	other sequences (93)
	Archaea (82)
	Duplodnaviria (37)
	Riboviria (RNA viruses and viroids) (22)
	Eukaryota (eukaryotes) (9)
	unclassified bacterial viruses (4)
	unclassified sequences (4)

More...

Experimental Method

X-RAY DIFFRACTION (2,429)

Polymer Entity Type

	Protein (2,350)
	RNA (117)
	DNA (70)

Refinement Resolution (Å)

	0.5 - 1.0 (8)
	1.0 - 1.5 (144)
	1.5 - 2.0 (695)
	2.0 - 2.5 (743)
	2.5 - 3.0 (542)
	3.0 - 3.5 (207)
	3.5 - 4.0 (61)
	4.0 - 4.5 (18)
	> 4.5 (11)

Release Date

	1980 - 1984 (1)
	1985 - 1989 (2)
	1990 - 1994 (12)
	1995 - 1999 (101)
	2000 - 2004 (249)
	2005 - 2009 (424)
	2010 - 2014 (566)
	2015 - 2019 (593)
	2020 - 2024 (458)
	2025 - 2029 (23)

Enzyme Classification Name

	Transferases (469)
	Hydrolases (409)
	Oxidoreductases (214)
	Lyases (72)
	Isomerases (54)
	Ligases (42)
	Translocases (8)

Membrane Protein Annotation

	PDBTM (150)
	MemProtMD (141)
	OPM (73)
	mpstruc (79)

Symmetry Type

	Cyclic (1,121)
	Asymmetric (906)
	Dihedral (561)
	Icosahedral (41)
	Tetrahedral (25)
	Octahedral (20)

SCOP Classification

	Alpha and beta proteins (a/b) (511)
	All beta proteins (459)
	Alpha and beta proteins (a+b) (291)
	All alpha proteins (182)
	Artifacts (236)
	Coiled coil proteins (120)
	Membrane and cell surface proteins and peptides (69)
	Small proteins (26)
	Multi-domain proteins (alpha and beta) (8)
	Designed proteins (1)

AllSelected

1 to 25 of 2,429 Structures

Page 1 of 98

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104L \| pdb_0000104l	Download File View File

HOW AMINO-ACID INSERTIONS ARE ALLOWED IN AN ALPHA-HELIX OF T4 LYSOZYME

Heinz, D.W., Matthews, B.W.

(1993) Nature 361: 561-564

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Tequatrovirus T4
Macromolecule	T4 LYSOZYME (protein)

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10MH \| pdb_000010mh	Download File View File

TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE WITH ADOHCY AND HEMIMETHYLATED DNA CONTAINING 5,6-DIHYDRO-5-AZACYTOSINE AT THE TARGET

Sheikhnejad, G., Brank, A., Christman, J.K., Goddard, A., Alvarez, E., Ford Junior, H., Marquez, V.E., Marasco, C.J., Sufrin, J.R., O'Gara, M., Cheng, X.

(1999) J Mol Biology 285: 2021-2034

Released	1999-02-09
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Haemophilus haemolyticus
Macromolecule	PROTEIN (CYTOSINE-SPECIFIC METHYLTRANSFERASE HHAI) (protein) DNA (5'-D(PCPCPAPTPGP(5CM)PGPCPTPGPAPC)-3') (nucleic acid) DNA (5'-D(PGPTPCPAPGP5NCPGPCPAPTPGPG)-3') (nucleic acid)
Unique Ligands	SAH

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1A1Q \| pdb_00001a1q	Download File View File

HEPATITIS C VIRUS NS3 PROTEINASE

Love, R.A., Parge, H.E., Wickersham, J.A., Hostomsky, Z., Habuka, N., Moomaw, E.W., Adachi, T., Hostomska, Z.

(1996) Cell 87: 331-342

Released	1998-03-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Hepacivirus hominis
Macromolecule	NS3 PROTEINASE (protein)
Unique Ligands	ZN

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1A1R \| pdb_00001a1r	Download File View File

HCV NS3 PROTEASE DOMAIN:NS4A PEPTIDE COMPLEX

Kim, J.L., Morgenstern, K.A., Lin, C., Fox, T., Dwyer, M.D., Landro, J.A., Chambers, S.P., Markland, W., Lepre, C.A., O'Malley, E.T., Harbeson, S.L., Rice, C.M., Murcko, M.A., Caron, P.R., Thomson, J.A.

(1996) Cell 87: 343-355

Released	1998-06-17
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Hepacivirus hominis
Macromolecule	NS3 PROTEIN (protein) NS4A PROTEIN (protein)
Unique Ligands	ZN

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1A4X \| pdb_00001a4x	Download File View File

PYRR, THE BACILLUS SUBTILIS PYRIMIDINE BIOSYNTHETIC OPERON REPRESSOR, HEXAMERIC FORM

Tomchick, D.R., Turner, R.J., Switzer, R.W., Smith, J.L.

(1998) Structure 6: 337-350

Released	1998-08-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacillus subtilis
Macromolecule	PYRIMIDINE OPERON REGULATORY PROTEIN PYRR (protein)
Unique Ligands	SO4

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1A52 \| pdb_00001a52	Download File View File

ESTROGEN RECEPTOR ALPHA LIGAND-BINDING DOMAIN COMPLEXED TO ESTRADIOL

Tanenbaum, D.M., Wang, Y., Sigler, P.B.

(1998) Proc Natl Acad Sci U S A 95: 5998-6003

Released	1998-09-16
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	ESTROGEN RECEPTOR (protein)
Unique Ligands	AU, EST

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1AA0 \| pdb_00001aa0	Download File View File

FIBRITIN DELETION MUTANT E (BACTERIOPHAGE T4)

Tao, Y., Strelkov, S.V., Mesyanzhinov, V.V., Rossmann, M.G.

(1997) Structure 5: 789-798

Released	1997-07-23
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Tequatrovirus T4
Macromolecule	FIBRITIN (protein)
Unique Ligands	CL, ZN

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1AQ3 \| pdb_00001aq3	Download File View File

BACTERIOPHAGE MS2 CAPSID PROTEIN/RNA COMPLEX

Van Den Worm, S., Stonehouse, N., Valegard, K., Liljas, L.

(1998) Nucleic Acids Res 26: 1345-1351

Released	1997-12-24
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia phage MS2
Macromolecule	PROTEIN (BACTERIOPHAGE MS2 COAT PROTEIN) (protein) RNA (5'-R(APCPAPUPGPAPGPGPAPUPUPAPCPCPCPAPU PGP*U)-3') (nucleic acid)

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1AQ4 \| pdb_00001aq4	Download File View File

STRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH AN RNA OPERATOR

Van Den Worm, S.H., Stonehouse, N.J., Valegard, K., Liljas, L.

(1998) Nucleic Acids Res 26: 1345-1351

Released	1997-12-24
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia phage MS2
Macromolecule	PROTEIN(BACTERIOPHAGE MS2 COAT PROTEIN) (protein) RNA (5'-R(APCPAPUPGPAPGPGPAPUPUPAPCPCPCPAPU PGP*U)-3') (nucleic acid)

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1AUP \| pdb_00001aup	Download File View File

GLUTAMATE DEHYDROGENASE

Baker, P.J., Waugh, M.L., Stillman, T.J., Turnbull, A.P., Rice, D.W.

(1997) Biochemistry 36: 16109-16115

Released	1998-03-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	[Clostridium] symbiosum
Macromolecule	NAD-SPECIFIC GLUTAMATE DEHYDROGENASE (protein)

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1B41 \| pdb_00001b41	Download File View File

HUMAN ACETYLCHOLINESTERASE COMPLEXED WITH FASCICULIN-II, GLYCOSYLATED PROTEIN

Kryger, G., Harel, M., Shafferman, A., Silman, I., Sussman, J.L.

(2000) Acta Crystallogr D Biol Crystallogr 56: 1385-1394

Released	2001-01-17
Method	X-RAY DIFFRACTION 2.76 Å
Organisms	Dendroaspis angusticeps Homo sapiens
Macromolecule	ACETYLCHOLINESTERASE (protein) FASCICULIN-2 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	FUC, NAG

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1B4L \| pdb_00001b4l	Download File View File

15 ATMOSPHERE OXYGEN YEAST CU/ZN SUPEROXIDE DISMUTASE ROOM TEMPERATURE (298K) STRUCTURE

Hart, P.J., Balbirnie, M.M., Ogihara, N.L., Nersissian, A.M., Weiss, M.S., Valentine, J.S., Eisenberg, D.

(1999) Biochemistry 38: 2167-2178

Released	1999-12-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	PROTEIN (CU/ZN SUPEROXIDE DISMUTASE) (protein)
Unique Ligands	CU, ZN

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1B4T \| pdb_00001b4t	Download File View File

H48C YEAST CU(II)/ZN SUPEROXIDE DISMUTASE ROOM TEMPERATURE (298K) STRUCTURE

Hart, P.J., Balbirnie, M.M., Ogihara, N.L., Nersissian, A.M., Weiss, M.S., Valentine, J.S., Eisenberg, D.

(1999) Biochemistry 38: 2167-2178

Released	1999-12-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	PROTEIN (CU/ZN SUPEROXIDE DISMUTASE) (protein)
Unique Ligands	CL, CU, ZN

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1BDF \| pdb_00001bdf	Download File View File

STRUCTURE OF ESCHERICHIA COLI RNA POLYMERASE ALPHA SUBUNIT N-TERMINAL DOMAIN

Zhang, G., Darst, S.A.

(1998) Science 281: 262-266

Released	1999-05-11
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	RNA POLYMERASE ALPHA SUBUNIT (protein)

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1BGV \| pdb_00001bgv	Download File View File

GLUTAMATE DEHYDROGENASE

Stillman, T.J., Baker, P.J., Britton, K.L., Rice, D.W.

(1993) J Mol Biology 234: 1131-1139

Released	1998-10-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	[Clostridium] symbiosum
Macromolecule	GLUTAMATE DEHYDROGENASE (protein)
Unique Ligands	GLU

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1BJP \| pdb_00001bjp	Download File View File

CRYSTAL STRUCTURE OF 4-OXALOCROTONATE TAUTOMERASE INACTIVATED BY 2-OXO-3-PENTYNOATE AT 2.4 ANGSTROMS RESOLUTION

Taylor, A.B., Czerwinski, R.M., Johnson Junior, W.H., Whitman, C.P., Hackert, M.L.

(1998) Biochemistry 37: 14692-14700

Released	1998-12-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Pseudomonas putida
Macromolecule	4-OXALOCROTONATE TAUTOMERASE (protein)
Unique Ligands	OXP

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1BMS \| pdb_00001bms	Download File View File

CRYSTAL STRUCTURE OF MS2 CAPSIDS WITH MUTATIONS IN THE SUBUNIT FG LOOP

Liljas, L., Stonehouse, N.J.

(1996) J Mol Biology 256: 330-339

Released	1996-03-08
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia phage MS2
Macromolecule	BACTERIOPHAGE MS2 CAPSID (protein)

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1BZO \| pdb_00001bzo	Download File View File

THREE-DIMENSIONAL STRUCTURE OF PROKARYOTIC CU,ZN SUPEROXIDE DISMUTASE FROM P.LEIOGNATHI, SOLVED BY X-RAY CRYSTALLOGRAPHY.

Bordo, D., Matak, D., Djinovic-Carugo, K., Rosano, C., Pesce, A., Bolognesi, M., Stroppolo, M.E., Falconi, M., Battistoni, A., Desideri, A.

(1999) J Mol Biology 285: 283-296

Released	1999-04-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Photobacterium leiognathi subsp. leiognathi
Macromolecule	PROTEIN (SUPEROXIDE DISMUTASE) (protein)
Unique Ligands	CU, IUM, ZN

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1C2R \| pdb_00001c2r	Download File View File

MOLECULAR STRUCTURE OF CYTOCHROME C2 ISOLATED FROM RHODOBACTER CAPSULATUS DETERMINED AT 2.5 ANGSTROMS RESOLUTION

Benning, M.M., Wesenberg, G., Caffrey, M.S., Bartsch, R.G., Meyer, T.E., Cusanovich, M.A., Rayment, I., Holden, H.M.

(1991) J Mol Biology 220: 673-685

Released	1992-01-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Rhodobacter capsulatus
Macromolecule	CYTOCHROME C2 (protein)
Unique Ligands	HEC

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1CI3 \| pdb_00001ci3	Download File View File

CYTOCHROME F FROM THE B6F COMPLEX OF PHORMIDIUM LAMINOSUM

Carrell, C.J., Schlarb, B.G., Howe, C.J., Bendall, D.S., Cramer, W.A., Smith, J.L.

(1999) Biochemistry 38: 9590-9599

Released	1999-08-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Leptolyngbya laminosa
Macromolecule	PROTEIN (CYTOCHROME F) (protein)
Unique Ligands	HEC, ZN

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1CIA \| pdb_00001cia	Download File View File

REPLACEMENT OF CATALYTIC HISTIDINE-195 OF CHLORAMPHENICOL ACETYLTRANSFERASE: EVIDENCE FOR A GENERAL BASE ROLE FOR GLUTAMATE

Leslie, A.G.W., Gibbs, M.R.

(1994) Biochemistry 33: 1944-1950

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	CHLORAMPHENICOL ACETYLTRANSFERASE (protein)
Unique Ligands	BME, CO

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1CLA \| pdb_00001cla	Download File View File

EVIDENCE FOR TRANSITION-STATE STABILIZATION BY SERINE-148 IN THE CATALYTIC MECHANISM OF CHLORAMPHENICOL ACETYLTRANSFERASE

Gibbs, M.R., Leslie, A.G.W.

(1990) Biochemistry 29: 2075-2080

Released	1990-07-15
Method	X-RAY DIFFRACTION 2.34 Å
Organisms	Escherichia coli
Macromolecule	TYPE III CHLORAMPHENICOL ACETYLTRANSFERASE (protein)
Unique Ligands	CLM, CO

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1CZI \| pdb_00001czi	Download File View File

CHYMOSIN COMPLEX WITH THE INHIBITOR CP-113972

Groves, M.R., Dhanaraj, V., Pitts, J.E., Badasso, M., Hoover, D., Nugent, P., Blundell, T.L.

(1998) Protein Eng 11: 833-840

Released	1997-04-01
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bos taurus
Macromolecule	CHYMOSIN (protein) CP-113972 (NORSTATINE-S-METHYL CYSTEINE-IODO-PHENYLALANINE-PROLINE) (protein)