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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Pei, X.Y."

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Search Summary

This query matches 45 Structures.

Refinements

Structure Determination Methodology

experimental (45)

Scientific Name of Source Organism

	Homo sapiens (12)
	synthetic construct (6)
	Geobacillus stearothermophilus (5)
	Escherichia coli K-12 (4)
	Pseudomonas aeruginosa (3)
	Pseudomonas aeruginosa PAO1 (3)
	Zymomonas mobilis (3)
	Mus musculus (2)
	Pectobacterium atrosepticum (2)
	Streptomyces coelicolor A3(2) (2)

More...

Taxonomy

	Bacteria (24)
	Eukaryota (15)
	other sequences (6)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (40)
	ELECTRON MICROSCOPY (5)

Polymer Entity Type

	Protein (45)
	RNA (8)

Refinement Resolution (Å)

	1.5 - 2.0 (4)
	2.0 - 2.5 (14)
	2.5 - 3.0 (19)
	3.0 - 3.5 (6)
	4.0 - 4.5 (1)
	> 4.5 (1)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (10)
	2005 - 2009 (8)
	2010 - 2014 (14)
	2015 - 2019 (5)
	2020 - 2024 (6)

Enzyme Classification Name

	Hydrolases (10)
	Oxidoreductases (6)
	Transferases (6)
	Lyases (3)
	Ligases (1)

Membrane Protein Annotation

	MemProtMD (4)
	OPM (4)
	PDBTM (4)
	mpstruc (2)

Symmetry Type

	Asymmetric (27)
	Cyclic (18)
	Dihedral (5)

SCOP Classification

	Alpha and beta proteins (a/b) (9)
	All beta proteins (5)
	Multi-domain proteins (alpha and beta) (6)
	All alpha proteins (5)
	Small proteins (1)
	Membrane and cell surface proteins and peptides (2)
	Alpha and beta proteins (a+b) (1)
	Artifacts (1)
	Coiled coil proteins (1)

AllSelected

1 to 25 of 45 Structures

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1DZG \| pdb_00001dzg	Download File View File

N135Q-S380C-ANTITHROMBIN-III

McCoy, A.J., Huntington, J.A., Carrell, R.W.

(2000) J Biological Chem 275: 15377

Released	2000-05-26
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	ANTITHROMBIN-III (protein)
Unique Ligands	GOL, NAG
Unique branched monosaccharides	NAG

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1DZH \| pdb_00001dzh	Download File View File

P14-FLUORESCEIN-N135Q-S380C-ANTITHROMBIN-III

Mccoy, A.J., Huntington, J.A., Carrell, R.W.

(2000) J Biological Chem 275: 15377

Released	2000-05-26
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Homo sapiens
Macromolecule	ANTITHROMBIN-III (protein)
Unique Ligands	GOL, NAG
Unique branched monosaccharides	BMA, NAG

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1E03 \| pdb_00001e03	Download File View File

PLASMA ALPHA ANTITHROMBIN-III AND PENTASACCHARIDE

McCoy, A.J., Jin, L., Abrahams, J.-P., Skinner, R., Carrell, R.W.

(2003) J Mol Biology 326: 823

Released	2000-06-02
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	ANTITHROMBIN-III (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, GU1, GU6, NAG, Z9H, Z9K, Z9L

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1E04 \| pdb_00001e04	Download File View File

PLASMA BETA ANTITHROMBIN-III

Mccoy, A.J., Skinner, R., Abrahams, J.-P., Pei, X.Y., Carrell, R.W.

(2003) J Mol Biology 326: 823

Released	2000-06-02
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	ANTITHROMBIN-III (protein)
Unique Ligands	GOL, MAN, PO4
Unique branched monosaccharides	BMA, MAN, NAG

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1E05 \| pdb_00001e05	Download File View File

PLASMA ALPHA ANTITHROMBIN-III

McCoy, A.J., Skinner, R., Abrahams, J.-P., Pei, X.Y., Carrell, R.W.

(2003) J Mol Biology 326: 823

Released	2000-06-02
Method	X-RAY DIFFRACTION 2.62 Å
Organisms	Homo sapiens
Macromolecule	ANTITHROMBIN-III (protein)
Unique Ligands	GOL, MAN, NAG, PO4
Unique branched monosaccharides	BMA, GAL, GUP, MAN, NAG

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1IK9 \| pdb_00001ik9	Download File View File

CRYSTAL STRUCTURE OF A XRCC4-DNA LIGASE IV COMPLEX

Sibanda, B.L., Critchlow, S.E., Begun, J., Pei, X.Y., Jackson, S.P., Blundell, T.L., Pellegrini, L.

(2001) Nat Struct Biol 8: 1015-1019

Released	2001-11-21
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	DNA LIGASE IV (protein) DNA REPAIR PROTEIN XRCC4 (protein)

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1MD6 \| pdb_00001md6	Download File View File

High resolution crystal structure of murine IL-1F5 reveals unique loop conformation for specificity

Pei, X.Y., Dunn, E.F., Gay, N.J., O'Neill, L.A.

(2003) Biochemistry 42: 10938-10944

Released	2003-09-30
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mus musculus
Macromolecule	interleukin 1 family, member 5 (delta) (protein)

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1NQB \| pdb_00001nqb	Download File View File

TRIVALENT ANTIBODY FRAGMENT

Williams, R.L., Pei, X.Y.

(1997) Proc Natl Acad Sci U S A 94: 9637-9642

Released	1997-08-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	SINGLE-CHAIN ANTIBODY FRAGMENT (protein)

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1QLP \| pdb_00001qlp	Download File View File

2.0 ANGSTROM STRUCTURE OF INTACT ALPHA-1-ANTITRYPSIN: A CANONICAL TEMPLATE FOR ACTIVE SERPINS

Elliott, P.R., Pei, X.Y., Dafforn, T., Read, R.J., Carrell, R.W., Lomas, D.A.

(2000) Protein Sci 9: 1274-1281

Released	1999-09-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	ALPHA-1-ANTITRYPSIN (protein)

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1RQF \| pdb_00001rqf	Download File View File

Structure of CK2 beta subunit crystallized in the presence of a p21WAF1 peptide

Bertrand, L., Sayed, M.F., Pei, X.-Y., Parisini, E., Dhanaraj, V., Bolanos-Garcia, V.M., Allende, J.E., Blundell, T.L.

(2004) Acta Crystallogr D Biol Crystallogr 60: 1698-1704

Released	2004-10-05
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Xenopus laevis
Macromolecule	Casein kinase II beta chain (protein) Disordered segment of Cyclin-dependent kinase inhibitor 1 (protein)
Unique Ligands	UNL, ZN

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1W85 \| pdb_00001w85	Download File View File

The crystal structure of pyruvate dehydrogenase E1 bound to the peripheral subunit binding domain of E2

Frank, R.A.W., Pratap, J.V., Pei, X.Y., Perham, R.N., Luisi, B.F.

(2004) Science 306: 872-876

Released	2004-11-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT OF PYRUVATE (protein) PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT (protein) PYRUVATE DEHYDROGENASE E1 COMPONENT, BETA SUBUNIT (protein)
Unique Ligands	K, MG, PEG, TPP

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1W88 \| pdb_00001w88	Download File View File

The crystal structure of pyruvate dehydrogenase E1(D180N,E183Q) bound to the peripheral subunit binding domain of E2

Frank, R.A.W., Pratap, J.V., Pei, X.Y., Perham, R.N., Luisi, B.F.

(2004) Science 306: 872

Released	2004-11-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT OF PYRUVATE (protein) PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT (protein) PYRUVATE DEHYDROGENASE E1 COMPONENT, BETA SUBUNIT (protein)
Unique Ligands	MG, TPP

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2BP7 \| pdb_00002bp7	Download File View File

New crystal form of the Pseudomonas putida branched-chain dehydrogenase (E1)

Frank, R.A.W., Pratap, J.V., Pei, X.Y., Perham, R.N., Luisi, B.F.

(2005) Structure 13: 1119

Released	2005-08-10
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Pseudomonas putida
Macromolecule	2-OXOISOVALERATE DEHYDROGENASE ALPHA SUBUNIT (protein) 2-OXOISOVALERATE DEHYDROGENASE BETA SUBUNIT (protein)

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2VDD \| pdb_00002vdd	Download File View File

Crystal Structure of the Open State of TolC Outer Membrane Component of Mutlidrug Efflux Pumps

Bavro, V.N., Pietras, Z., Furnham, N., Perez-Cano, L., Fernandez-Recio, J., Pei, X.Y., Truer, R., Misra, R., Luisi, B.

(2008) Mol Cell 30: 114

Released	2008-04-22
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Escherichia coli K-12
Macromolecule	OUTER MEMBRANE PROTEIN TOLC (protein)
Unique Ligands	CL, K

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2VDE \| pdb_00002vde	Download File View File

Crystal Structure of the Open State of TolC Outer Membrane Component of Mutlidrug Efflux Pumps

Bavro, V.N., Pietras, Z., Furnham, N., Perez-Cano, L., Fernandez-Recio, J., Pei, X.Y., Truer, R., Misra, R., Luisi, B.

(2008) Mol Cell 30: 114

Released	2008-04-22
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Escherichia coli K-12
Macromolecule	OUTER MEMBRANE PROTEIN TOLC (protein)
Unique Ligands	CL

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2WMZ \| pdb_00002wmz	Download File View File

Structure of a mutated TolC

Hinchliffe, P., Pei, X.Y., Symmons, M.F., Koronakis, E., Hughes, C., Koronakis, V.

(2011) Proc Natl Acad Sci U S A 108: 2112

Released	2011-01-26
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli K-12
Macromolecule	OUTER MEMBRANE PROTEIN TOLC (protein)
Unique Ligands	CL, NA, PGE

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2WVA \| pdb_00002wva	Download File View File

Structural insights into the pre-reaction state of pyruvate decarboxylase from Zymomonas mobilis

Pei, X.Y., Erixon, K., Luisi, B.F., Leeper, F.J.

(2010) Biochemistry 49: 1727

Released	2010-02-09
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Zymomonas mobilis
Macromolecule	PYRUVATE DECARBOXYLASE (protein)
Unique Ligands	MG, PYR, TPU

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2WVG \| pdb_00002wvg	Download File View File

Structural insights into the pre-reaction state of pyruvate decarboxylase from Zymomonas mobilis

Pei, X.Y., Erixon, K., Luisi, B.F., Leeper, F.J.

(2010) Biochemistry 49: 1727

Released	2010-02-09
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Zymomonas mobilis
Macromolecule	PYRUVATE DECARBOXYLASE (protein)
Unique Ligands	F, MG, TPU

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2WVH \| pdb_00002wvh	Download File View File

Structural insights into the pre-reaction state of pyruvate decarboxylase from Zymomonas mobilis

Pei, X.Y., Erixon, K., Luisi, B.F., Leeper, F.J.

(2010) Biochemistry 49: 1727

Released	2010-02-09
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Zymomonas mobilis
Macromolecule	PYRUVATE DECARBOXYLASE (protein)

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2XD0 \| pdb_00002xd0	Download File View File

A processed non-coding RNA regulates a bacterial antiviral system

Blower, T.R., Pei, X.Y., Short, F.L., Fineran, P.C., Humphreys, D.P., Luisi, B.F., Salmond, G.P.C.

(2011) Nat Struct Mol Biol 18: 185-190

Released	2011-01-12
Method	X-RAY DIFFRACTION 3 Å
Organisms	Pectobacterium atrosepticum
Macromolecule	TOXN (protein) TOXI (nucleic acid)

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2XDB \| pdb_00002xdb	Download File View File

A processed non-coding RNA regulates a bacterial antiviral system

Blower, T.R., Pei, X.Y., Short, F.L., Fineran, P.C., Humphreys, D.P., Luisi, B.F., Salmond, G.P.C.

(2011) Nat Struct Mol Biol 18: 185

Released	2011-01-12
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Pectobacterium atrosepticum
Macromolecule	TOXN (protein) TOXI (nucleic acid)
Unique Ligands	CO, SO4

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2XMN \| pdb_00002xmn	Download File View File

High resolution snapshots of defined TolC open states present an iris- like movement of periplasmic entrance helices

Pei, X.Y., Koronakis, E., Hughes, C., Koronakis, V.

(2011) Proc Natl Acad Sci U S A 108: 2112-2117

Released	2011-01-26
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Escherichia coli K-12
Macromolecule	Outer membrane protein TolC (protein)
Unique Ligands	CL, LMT

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3CFS \| pdb_00003cfs	Download File View File

Structural basis of the interaction of RbAp46/RbAp48 with histone H4

Murzina, N.V., Pei, X.-Y., Pratap, J.V., Sparkes, M., Vicente-Garcia, J., Ben-Shahar, T.R., Verreault, A., Luisi, B.F., Laue, E.D.

(2008) Structure 16: 1077-1085

Released	2008-06-10
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Histone H4 (protein) Histone-binding protein RBBP7 (protein)
Unique Ligands	ARS

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3CFV \| pdb_00003cfv	Download File View File

Structural basis of the interaction of RbAp46/RbAp48 with histone H4

Pei, X.-Y., Murzina, N.V., Zhang, W., McLaughlin, S., Verreault, A., Luisi, B.F., Laue, E.D.

(2008) Structure 16: 1077-1085

Released	2008-06-10
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Histone H4 peptide (protein) Histone-binding protein RBBP7 (protein)
Unique Ligands	ARS

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3DUF \| pdb_00003duf	Download File View File

Snapshots of catalysis in the E1 subunit of the pyruvate dehydrogenase multi-enzyme complex

Pei, X.Y., Titman, C.M., Frank, R.A.W., Leeper, F.J., Luisi, B.F.

(2008) Structure 16: 1860-1872

Released	2009-01-06
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (protein) Pyruvate dehydrogenase E1 component subunit alpha (protein) Pyruvate dehydrogenase E1 component subunit beta (protein)
Unique Ligands	K, MG, R1T

1 to 25 of 45 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1DZG | pdb_00001dzg

1DZH | pdb_00001dzh

1E03 | pdb_00001e03

1E04 | pdb_00001e04

1E05 | pdb_00001e05

1IK9 | pdb_00001ik9

1MD6 | pdb_00001md6

1NQB | pdb_00001nqb

1QLP | pdb_00001qlp

1RQF | pdb_00001rqf

1W85 | pdb_00001w85

1W88 | pdb_00001w88

2BP7 | pdb_00002bp7

2VDD | pdb_00002vdd

2VDE | pdb_00002vde

2WMZ | pdb_00002wmz

2WVA | pdb_00002wva

2WVG | pdb_00002wvg

2WVH | pdb_00002wvh

2XD0 | pdb_00002xd0

2XDB | pdb_00002xdb

2XMN | pdb_00002xmn

3CFS | pdb_00003cfs

3CFV | pdb_00003cfv

3DUF | pdb_00003duf