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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Oldfield, E."

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Search Summary

This query matches 241 Structures.

Refinements

Structure Determination Methodology

experimental (241)

Scientific Name of Source Organism

	Homo sapiens (33)
	Escherichia coli K-12 (26)
	Staphylococcus aureus (26)
	Saccharomyces cerevisiae (23)
	Escherichia coli (18)
	Trypanosoma brucei (16)
	Streptomyces viridosporus (12)
	Saccharolobus solfataricus P2 (11)
	Trypanosoma cruzi (9)
	Thermus thermophilus HB8 (8)

More...

Taxonomy

	Bacteria (129)
	Eukaryota (109)
	Archaea (11)
	other sequences (3)

Experimental Method

	X-RAY DIFFRACTION (240)
	SOLID-STATE NMR (1)

Polymer Entity Type

	Protein (238)
	DNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (15)
	1.5 - 2.0 (74)
	2.0 - 2.5 (109)
	2.5 - 3.0 (37)
	3.0 - 3.5 (5)

Release Date

	2000 - 2004 (5)
	2005 - 2009 (50)
	2010 - 2014 (100)
	2015 - 2019 (72)
	2020 - 2024 (14)

Enzyme Classification Name

	Transferases (142)
	Oxidoreductases (29)
	Hydrolases (6)
	Isomerases (5)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Cyclic (172)
	Asymmetric (67)
	Dihedral (7)
	Helical (1)

SCOP Classification

	All alpha proteins (52)
	Alpha and beta proteins (a/b) (41)
	Artifacts (23)
	All beta proteins (8)
	Alpha and beta proteins (a+b) (7)

AllSelected

1 to 25 of 241 Structures

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1PPV \| pdb_00001ppv	Download File View File

ISOPENTENYLPYROPHOSPHATE-DIMETHYLALLYLPYROPHOSPHATE ISOMERASE IN COMPLEX WITH THE BROMOHYDRINE OF IPP

Wouters, J., Oldfield, E.

(2005) J Am Chem Soc 127: 536-537

Released	2004-06-29
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	Isopentenyl-diphosphate delta-isomerase (protein)
Unique Ligands	BHI, MG, MN

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1PPW \| pdb_00001ppw	Download File View File

ISOPENTENYLPYROPHOSPHATE-DIMETHYLALLYLPYROPHOSPHATE ISOMERASE IN COMPLEX WITH THE BROMOHYDRINE OF IPP

Wouters, J., Oldfield, E.

(2005) J Am Chem Soc 127: 536-537

Released	2004-06-24
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Escherichia coli
Macromolecule	Isopentenyl-diphosphate delta-isomerase (protein)
Unique Ligands	EIP, MG, MN

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1Q54 \| pdb_00001q54	Download File View File

STRUCTURE AND MECHANISM OF ACTION OF ISOPENTENYLPYROPHOSPHATE-DIMETHYLALLYLPYROPHOSPHATE ISOMERASE: COMPLEX WITH THE BROMOHYDRINE OF IPP

Wouters, J., Oudjama, Y., Ghosh, S., Stalon, V., Droogmans, L.

(2003) J Am Chem Soc 125: 3198-3199

Released	2003-08-26
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Escherichia coli
Macromolecule	ISOPENTENYL DIPHOSPHATE DELTA-ISOMERASE (protein)
Unique Ligands	BHI, MG, MN

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1T1R \| pdb_00001t1r	Download File View File

Crystal Structure of the Reductoisomerase Complexed with a Bisphosphonate

Yajima, S., Hara, K., Sanders, J.M., Yin, F., Ohsawa, K., Wiesner, J., Jomaa, H., Oldfield, E.

(2004) J Am Chem Soc 126: 10824-10825

Released	2004-09-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	1-deoxy-D-xylulose 5-phosphate reductoisomerase (protein)
Unique Ligands	IMB, SO4

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1T1S \| pdb_00001t1s	Download File View File

Crystal Structure of the Reductoisomerase Complexed with a Bisphosphonate

Yajima, S., Hara, K., Sanders, J.M., Yin, F., Ohsawa, K., Wiesner, J., Jomaa, H., Oldfield, E.

(2004) J Am Chem Soc 126: 10824-10825

Released	2004-09-14
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	1-deoxy-D-xylulose 5-phosphate reductoisomerase (protein)
Unique Ligands	CBQ, MG, SO4

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1X83 \| pdb_00001x83	Download File View File

Y104F IPP isomerase reacted with (S)-bromohydrine of IPP

Wouters, J., Oldfield, E.

(2005) J Am Chem Soc 127: 536-537

Released	2005-01-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	Isopentenyl-diphosphate delta-isomerase (protein)
Unique Ligands	MG, MN, SBH

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1X84 \| pdb_00001x84	Download File View File

IPP isomerase (wt) reacted with (S)-bromohydrine of IPP

Wouters, J., Oldfield, E.

(2005) J Am Chem Soc 127: 536-537

Released	2005-01-25
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Escherichia coli
Macromolecule	Isopentenyl-diphosphate delta-isomerase (protein)
Unique Ligands	MG, MN, SBH

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1YHK \| pdb_00001yhk	Download File View File

Trypanosoma cruzi farnesyl diphosphate synthase

Gabelli, S.B., McLellan, J.S., Montalvetti, A., Oldfield, E., Docampo, R., Amzel, L.M.

(2005) Proteins 62: 80-88

Released	2005-12-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Trypanosoma cruzi
Macromolecule	farnesyl pyrophosphate synthase (protein)
Unique Ligands	SO4

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1YHL \| pdb_00001yhl	Download File View File

Structure of the complex of Trypanosoma cruzi farnesyl diphosphate synthase with risedronate, dmapp and mg+2

Gabelli, S.B., McLellan, J.S., Montalvetti, A., Oldfield, E., Docampo, R., Amzel, L.M.

(2005) Proteins 62: 80-88

Released	2005-12-20
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Trypanosoma cruzi
Macromolecule	farnesyl pyrophosphate synthase (protein)
Unique Ligands	DMA, MG, RIS, SO4

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1YHM \| pdb_00001yhm	Download File View File

Structure of the complex of Trypanosoma cruzi farnesyl disphosphate synthase with alendronate, Isopentenyl diphosphate and mg+2

Gabelli, S.B., McLellan, J.S., Montalvetti, A., Oldfield, E., Docampo, R., Amzel, L.M.

(2005) Proteins 62: 80-88

Released	2005-12-20
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Trypanosoma cruzi
Macromolecule	farnesyl pyrophosphate synthase (protein)
Unique Ligands	AHD, IPE, MG, SO4

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2E8T \| pdb_00002e8t	Download File View File

S. cerevisiae geranylgeranyl pyrophosphate synthase in complex with magnesium, FsPP and IPP

Guo, R.T., Ko, T.P., Chen, C.K.-M., Jeng, W.Y., Chang, T.H., Liang, P.H., Oldfield, E., Wang, A.H.-J.

(2007) Proc Natl Acad Sci U S A 104: 10022-10027

Released	2007-06-12
Method	X-RAY DIFFRACTION 2.13 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Geranylgeranyl pyrophosphate synthetase (protein)
Unique Ligands	FPS, IPE, MG

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2E8U \| pdb_00002e8u	Download File View File

S. cerevisiae geranylgeranyl pyrophosphate synthase in complex with magnesium and IPP (P21)

Guo, R.T., Chen, C.K.-M., Ko, T.P., Jeng, W.Y., Chang, T.H., Liang, P.H., Oldfield, E., Wang, A.H.-J.

(2007) Proc Natl Acad Sci U S A 104: 10022-10027

Released	2007-06-12
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Geranylgeranyl pyrophosphate synthetase (protein)
Unique Ligands	IPE, MG

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2E8V \| pdb_00002e8v	Download File View File

S. cerevisiae geranylgeranyl pyrophosphate synthase in complex with product GGPP (P21)

Chen, C.K.-M., Guo, R.T., Ko, T.P., Jeng, W.Y., Chang, T.H., Liang, P.H., Oldfield, E., Wang, A.H.-J.

(2007) Proc Natl Acad Sci U S A 104: 10022-10027

Released	2007-06-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Geranylgeranyl pyrophosphate synthetase (protein)
Unique Ligands	GRG

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2E8W \| pdb_00002e8w	Download File View File

S. cerevisiae geranylgeranyl pyrophosphate synthase in complex with magnesium and IPP

Guo, R.T., Ko, T.P., Chen, C.K.-M., Jeng, W.Y., Chang, T.H., Liang, P.H., Oldfield, E., Wang, A.H.-J.

(2007) Proc Natl Acad Sci U S A 104: 10022-10027

Released	2007-06-12
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Geranylgeranyl pyrophosphate synthetase (protein)
Unique Ligands	IPE, MG

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2E8X \| pdb_00002e8x	Download File View File

S. cerevisiae geranylgeranyl pyrophosphate synthase in complex with magnesium and GPP

Guo, R.T., Ko, T.P., Chen, C.K.-M., Jeng, W.Y., Chang, T.H., Liang, P.H., Oldfield, E., Wang, A.H.-J.

(2007) Proc Natl Acad Sci U S A 104: 10022-10027

Released	2007-06-12
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Geranylgeranyl pyrophosphate synthetase (protein)
Unique Ligands	GPP, MG

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2E90 \| pdb_00002e90	Download File View File

S. cerevisiae geranylgeranyl pyrophosphate synthase in complex with magnesium, pyrophosphate and FPP

Guo, R.T., Ko, T.P., Chen, C.K.-M., Jeng, W.Y., Chang, T.H., Liang, P.H., Oldfield, E., Wang, A.H.-J.

(2007) Proc Natl Acad Sci U S A 104: 10022-10027

Released	2007-06-12
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Geranylgeranyl pyrophosphate synthetase (protein)
Unique Ligands	FPP, MG, PPV

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2E91 \| pdb_00002e91	Download File View File

S. cerevisiae geranylgeranyl pyrophosphate synthase in complex with magnesium and BPH-91

Guo, R.T., Ko, T.P., Cao, R., Chen, C.K.-M., Jeng, W.Y., Chang, T.H., Liang, P.H., Oldfield, E., Wang, A.H.-J.

(2007) Proc Natl Acad Sci U S A 104: 10022-10027

Released	2007-06-12
Method	X-RAY DIFFRACTION 2.14 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Geranylgeranyl pyrophosphate synthetase (protein)
Unique Ligands	MG, ZOL

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2E92 \| pdb_00002e92	Download File View File

S. cerevisiae geranylgeranyl pyrophosphate synthase in complex with magnesium and BPH-261

Guo, R.T., Ko, T.P., Cao, R., Jeng, W.Y., Chen, C.K.-M., Chang, T.H., Liang, P.H., Oldfield, E., Wang, A.H.-J.

(2007) Proc Natl Acad Sci U S A 104: 10022-10027

Released	2007-06-12
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Geranylgeranyl pyrophosphate synthetase (protein)
Unique Ligands	M0N, MG

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2E93 \| pdb_00002e93	Download File View File

S. cerevisiae geranylgeranyl pyrophosphate synthase in complex with BPH-629

Guo, R.T., Cao, R., Ko, T.P., Chen, C.K.-M., Jeng, W.Y., Chang, T.H., Liang, P.H., Oldfield, E., Wang, A.H.-J.

(2007) Proc Natl Acad Sci U S A 104: 10022-10027

Released	2007-06-12
Method	X-RAY DIFFRACTION 2.12 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Geranylgeranyl pyrophosphate synthetase (protein)
Unique Ligands	B29

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2E94 \| pdb_00002e94	Download File View File

S. cerevisiae geranylgeranyl pyrophosphate synthase in complex with magnesium and BPH-364

Guo, R.T., Ko, T.P., Cao, R., Chen, C.K.-M., Jeng, W.Y., Chang, T.H., Liang, P.H., Oldfield, E., Wang, A.H.-J.

(2007) Proc Natl Acad Sci U S A 104: 10022-10027

Released	2007-06-12
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Geranylgeranyl pyrophosphate synthetase (protein)
Unique Ligands	364, MG

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2E95 \| pdb_00002e95	Download File View File

S. cerevisiae geranylgeranyl pyrophosphate synthase in complex with magnesium and BPH-675

Guo, R.T., Cao, R., Ko, T.P., Jeng, W.Y., Chang, T.H., Chen, C.K.-M., Liang, P.H., Oldfield, E., Wang, A.H.-J.

(2007) Proc Natl Acad Sci U S A 104: 10022-10027

Released	2007-06-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Geranylgeranyl pyrophosphate synthetase (protein)
Unique Ligands	B75, MG

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2E98 \| pdb_00002e98	Download File View File

E. coli undecaprenyl pyrophosphate synthase in complex with BPH-629

Guo, R.T., Ko, T.P., Cao, R., Liang, P.H., Oldfield, E., Wang, A.H.J.

(2007) Proc Natl Acad Sci U S A 104: 10022-10027

Released	2007-06-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	Undecaprenyl pyrophosphate synthetase (protein)
Unique Ligands	B29

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2E99 \| pdb_00002e99	Download File View File

E. coli undecaprenyl pyrophosphate synthase in complex with BPH-608

Guo, R.T., Ko, T.P., Cao, R., Liang, P.H., Oldfield, E., Wang, A.H.J.

(2007) Proc Natl Acad Sci U S A 104: 10022-10027

Released	2007-06-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	Undecaprenyl pyrophosphate synthetase (protein)
Unique Ligands	B08

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2E9A \| pdb_00002e9a	Download File View File

E. coli undecaprenyl pyrophosphate synthase in complex with BPH-628

Guo, R.T., Ko, T.P., Cao, R., Liang, P.H., Oldfield, E., Wang, A.H.J.

(2007) Proc Natl Acad Sci U S A 104: 10022-10027

Released	2007-06-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	Undecaprenyl pyrophosphate synthetase (protein)
Unique Ligands	B28

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2E9C \| pdb_00002e9c	Download File View File

E. coli undecaprenyl pyrophosphate synthase in complex with BPH-675

Guo, R.T., Ko, T.P., Cao, R., Liang, P.H., Oldfield, E., Wang, A.H.J.

(2007) Proc Natl Acad Sci U S A 104: 10022-10027

Released	2007-06-12
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Escherichia coli
Macromolecule	Undecaprenyl pyrophosphate synthetase (protein)
Unique Ligands	B75

1 to 25 of 241 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1PPV | pdb_00001ppv

1PPW | pdb_00001ppw

1Q54 | pdb_00001q54

1T1R | pdb_00001t1r

1T1S | pdb_00001t1s

1X83 | pdb_00001x83

1X84 | pdb_00001x84

1YHK | pdb_00001yhk

1YHL | pdb_00001yhl

1YHM | pdb_00001yhm

2E8T | pdb_00002e8t

2E8U | pdb_00002e8u

2E8V | pdb_00002e8v

2E8W | pdb_00002e8w

2E8X | pdb_00002e8x

2E90 | pdb_00002e90

2E91 | pdb_00002e91

2E92 | pdb_00002e92

2E93 | pdb_00002e93

2E94 | pdb_00002e94

2E95 | pdb_00002e95

2E98 | pdb_00002e98

2E99 | pdb_00002e99

2E9A | pdb_00002e9a

2E9C | pdb_00002e9c