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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Nordlund, P."

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Search Summary

This query matches 284 Structures.

Refinements

Structure Determination Methodology

experimental (284)

Scientific Name of Source Organism

	Homo sapiens (189)
	Escherichia coli (19)
	Escherichia coli K-12 (11)
	Thermotoga maritima (11)
	Thermus thermophilus (8)
	Tequatrovirus T4 (7)
	Corynebacterium ammoniagenes (5)
	Plasmodium falciparum 3D7 (5)
	Shewanella oneidensis MR-1 (4)
	Bos taurus (3)

More...

Taxonomy

	Eukaryota (209)
	Bacteria (61)
	Duplodnaviria (16)
	other sequences (2)
	Archaea (1)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (282)
	SOLUTION NMR (2)

Polymer Entity Type

	Protein (284)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (13)
	1.5 - 2.0 (85)
	2.0 - 2.5 (104)
	2.5 - 3.0 (62)
	3.0 - 3.5 (14)
	3.5 - 4.0 (2)
	4.0 - 4.5 (1)
	> 4.5 (1)

Release Date

	1990 - 1994 (5)
	1995 - 1999 (11)
	2000 - 2004 (23)
	2005 - 2009 (132)
	2010 - 2014 (70)
	2015 - 2019 (35)
	2020 - 2024 (8)

Enzyme Classification Name

	Hydrolases (96)
	Transferases (71)
	Oxidoreductases (55)
	Isomerases (15)
	Ligases (10)
	Lyases (11)

Membrane Protein Annotation

	OPM (15)
	MemProtMD (10)
	PDBTM (10)
	mpstruc (8)

Symmetry Type

	Cyclic (156)
	Asymmetric (122)
	Dihedral (22)
	Tetrahedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (52)
	Alpha and beta proteins (a/b) (66)
	All alpha proteins (39)
	Artifacts (39)
	All beta proteins (18)
	Membrane and cell surface proteins and peptides (6)
	Multi-domain proteins (alpha and beta) (4)
	Small proteins (3)

AllSelected

1 to 25 of 284 Structures

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1AAZ \| pdb_00001aaz	Download File View File

THE STRUCTURE OF OXIDIZED BACTERIOPHAGE T4 GLUTAREDOXIN (THIOREDOXIN)

Eklund, H., Ingelman, M., Soderberg, B.-O., Uhlin, T., Nordlund, P., Nikkola, M., Sonnerstam, U., Joelson, T., Petratos, K.

(1992) J Mol Biology 228: 596-618

Released	1993-10-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Tequatrovirus T4
Macromolecule	GLUTAREDOXIN (protein)
Unique Ligands	CD

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1ABA \| pdb_00001aba	Download File View File

THE STRUCTURE OF OXIDIZED BACTERIOPHAGE T4 GLUTAREDOXIN (THIOREDOXIN). REFINEMENT OF NATIVE AND MUTANT PROTEINS

Eklund, H., Ingelman, M., Soderberg, B.-O., Uhlin, T., Nordlund, P., Nikkola, M., Sonnerstam, U., Joelson, T., Petratos, K.

(1992) J Mol Biology 228: 596-618

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Tequatrovirus T4
Macromolecule	GLUTAREDOXIN (protein)
Unique Ligands	MES

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1AE7 \| pdb_00001ae7	Download File View File

NOTEXIN, A PRESYNAPTIC NEUROTOXIC PHOSPHOLIPASE A2

Westerlund, B., Nordlund, P., Uhlin, U., Eaker, D., Eklund, H.

(1992) FEBS Lett 301: 159-164

Released	1997-05-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Notechis scutatus scutatus
Macromolecule	PHOSPHOLIPASE A2 (protein)
Unique Ligands	SO4

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1AV8 \| pdb_00001av8	Download File View File

RIBONUCLEOTIDE REDUCTASE R2 SUBUNIT FROM E. COLI

Han, S., Arvai, A., Tainer, J.A.

(1998) Biochemistry 37: 5840-5848

Released	1998-10-28
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	RIBONUCLEOTIDE REDUCTASE R2 (protein)
Unique Ligands	FEO

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1BIQ \| pdb_00001biq	Download File View File

RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 BETA CHAIN MUTANT E238A

Logan, D.T., Demare, F., Persson, B.O., Slaby, A., Sjoberg, B.M., Nordlund, P.

(1998) Biochemistry 37: 10798-10807

Released	1999-01-13
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE (protein)
Unique Ligands	FE, FE2, HG, OH

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1H78 \| pdb_00001h78	Download File View File

STRUCTURAL BASIS FOR ALLOSTERIC SUBSTRATE SPECIFICITY REGULATION IN CLASS III RIBONUCLEOTIDE REDUCTASES: NRDD IN COMPLEX WITH DCTP.

Larsson, K.-M., Andersson, J., Sjoeberg, B.-M., Nordlund, P., Logan, D.T.

(2001) Structure 9: 739

Released	2002-07-04
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Tequatrovirus T4
Macromolecule	ANAEROBIC RIBONUCLEOTIDE-TRIPHOSPHATE REDUCTASE LARGE CHAIN (protein)
Unique Ligands	DCP, MG

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1H79 \| pdb_00001h79	Download File View File

STRUCTURAL BASIS FOR ALLOSTERIC SUBSTRATE SPECIFICITY REGULATION IN CLASS III RIBONUCLEOTIDE REDUCTASES: NRDD IN COMPLEX WITH DTTP

Larsson, K.-M., Andersson, J., Sjoeberg, B.-M., Nordlund, P., Logan, D.T.

(2001) Structure 9: 739

Released	2002-03-28
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Tequatrovirus T4
Macromolecule	ANAEROBIC RIBONUCLEOTIDE-TRIPHOSPHATE REDUCTASE LARGE CHAIN (protein)
Unique Ligands	FE2, MG, TTP

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1H7A \| pdb_00001h7a	Download File View File

Structural basis for allosteric substrate specificity regulation in class III ribonucleotide reductases: NRDD in complex with dATP

Larsson, K.-M., Andersson, J., Sjoeberg, B.-M., Nordlund, P., Logan, D.T.

(2001) Structure 9: 739

Released	2002-03-28
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Tequatrovirus T4
Macromolecule	ANAEROBIC RIBONUCLEOTIDE-TRIPHOSPHATE REDUCTASE LARGE CHAIN (protein)
Unique Ligands	DTP, FE2, MG

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1H7B \| pdb_00001h7b	Download File View File

Structural basis for allosteric substrate specificity regulation in class III ribonucleotide reductases, native NRDD

Larsson, K.-M., Andersson, J., Sjoeberg, B.-M., Nordlund, P., Logan, D.T.

(2001) Structure 9: 739

Released	2002-03-28
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Tequatrovirus T4
Macromolecule	ANAEROBIC RIBONUCLEOTIDE-TRIPHOSPHATE REDUCTASE LARGE CHAIN (protein)
Unique Ligands	PO4

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1HK8 \| pdb_00001hk8	Download File View File

STRUCTURAL BASIS FOR ALLOSTERIC SUBSTRATE SPECIFICITY REGULATION IN CLASS III RIBONUCLEOTIDE REDUCTASES: NRDD IN COMPLEX WITH DGTP

Larsson, K.-M., Andersson, J., Sjoeberg, B.-M., Nordlund, P., Logan, D.T.

(2003) Proc Natl Acad Sci U S A 100: 3826

Released	2003-03-27
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Tequatrovirus T4
Macromolecule	ANAEROBIC RIBONUCLEOTIDE-TRIPHOSPHATE REDUCTASE (protein)
Unique Ligands	DGT, MN, ZN

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1HS6 \| pdb_00001hs6	Download File View File

STRUCTURE OF LEUKOTRIENE A4 HYDROLASE COMPLEXED WITH BESTATIN.

Thunnissen, M.M.G.M., Nordlund, P.N., Haeggstrom, J.Z.

(2001) Nat Struct Biol 8: 131-135

Released	2001-06-24
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	LEUKOTRIENE A-4 HYDROLASE (protein)
Unique Ligands	ACT, BES, IMD, YB, ZN

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1JPR \| pdb_00001jpr	Download File View File

Mn substituted Ribonucleotide reductase R2 from E. coli oxidized by nitric oxide

Hogbom, M., Andersson, M.E., Nordlund, P.

(2001) J Biol Inorg Chem 6: 315-323

Released	2001-08-15
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Escherichia coli
Macromolecule	Protein R2 of Ribonucleotide reductase (protein)
Unique Ligands	HG, MN

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1JQC \| pdb_00001jqc	Download File View File

Mn substituted Ribonucleotide reductase R2 from E. Coli oxidized by hydrogen peroxide and hydroxylamine

Hogbom, M., Andersson, M.E., Nordlund, P.

(2001) J Biol Inorg Chem 6: 315-323

Released	2001-08-22
Method	X-RAY DIFFRACTION 1.61 Å
Organisms	Escherichia coli
Macromolecule	Protein R2 of ribonucleotide reductase (protein)
Unique Ligands	HG, MN

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1KGN \| pdb_00001kgn	Download File View File

R2F from Corynebacterium Ammoniagenes in its oxidised, Fe containing, form

Hogbom, M., Huque, Y., Sjoberg, B.M., Nordlund, P.

(2002) Biochemistry 41: 1381-1389

Released	2001-12-21
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Corynebacterium ammoniagenes
Macromolecule	Ribonucleotide reductase protein R2F (protein)
Unique Ligands	FE

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1KGO \| pdb_00001kgo	Download File View File

R2F from Corynebacterium Ammoniagenes in its reduced, Fe containing, form

Hogbom, M., Huque, Y., Sjoberg, B.M., Nordlund, P.

(2002) Biochemistry 41: 1381-1389

Released	2001-12-21
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Corynebacterium ammoniagenes
Macromolecule	Ribonucleotide reductase protein R2F (protein)
Unique Ligands	FE2

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1KGP \| pdb_00001kgp	Download File View File

R2F from Corynebacterium Ammoniagenes in its Mn substituted form

Hogbom, M., Huque, Y., Sjoberg, B.M., Nordlund, P.

(2002) Biochemistry 41: 1381-1389

Released	2001-12-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Corynebacterium ammoniagenes
Macromolecule	Ribonucleotide reductase protein R2F (protein)
Unique Ligands	MN

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1LP1 \| pdb_00001lp1	Download File View File

Protein Z in complex with an in vitro selected affibody

Hogbom, M., Eklund, M., Nygren, P.A., Nordlund, P.

(2003) Proc Natl Acad Sci U S A 100: 3191-3196

Released	2003-03-18
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Staphylococcus aureus
Macromolecule	Affibody binding protein Z (protein) Immunoglobulin G binding protein A (protein)
Unique Ligands	MG, SO4

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1MH9 \| pdb_00001mh9	Download File View File

Crystal Structure Analysis of deoxyribonucleotidase

Rinaldo-Matthis, A., Rampazzo, C., Reichard, P., Bianchi, V., Nordlund, P.

(2002) Nat Struct Biol 9: 779-787

Released	2002-10-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	deoxyribonucleotidase (protein)
Unique Ligands	MG, PO4

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1MMO \| pdb_00001mmo	Download File View File

CRYSTAL STRUCTURE OF A BACTERIAL NON-HAEM IRON HYDROXYLASE THAT CATALYSES THE BIOLOGICAL OXIDATION OF METHANE

Rosenzweig, A.C., Frederick, C.A., Lippard, S.J., Nordlund, P.

(1993) Nature 366: 537-543

Released	1995-02-27
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Methylococcus capsulatus
Macromolecule	METHANE MONOOXYGENASE HYDROLASE (ALPHA CHAIN) (protein) METHANE MONOOXYGENASE HYDROLASE (BETA CHAIN) (protein) METHANE MONOOXYGENASE HYDROLASE (GAMMA CHAIN) (protein)
Unique Ligands	ACY, FE

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1MRR \| pdb_00001mrr	Download File View File

SUBSTITUTION OF MANGANESE FOR IRON IN RIBONUCLEOTIDE REDUCTASE FROM ESCHERICHIA COLI. SPECTROSCOPIC AND CRYSTALLOGRAPHIC CHARACTERIZATION

Eklund, H., Nordlund, P.

(1992) J Biological Chem 267: 20682-20688

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	RIBONUCLEOTIDE REDUCTASE R1 PROTEIN (protein)
Unique Ligands	HG, MN

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1MTY \| pdb_00001mty	Download File View File

METHANE MONOOXYGENASE HYDROXYLASE FROM METHYLOCOCCUS CAPSULATUS (BATH)

Rosenzweig, A.C., Nordlund, P., Lippard, S.J., Frederick, C.A.

(1997) Proteins 29: 141-152

Released	1997-04-21
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Methylococcus capsulatus str. Bath
Macromolecule	METHANE MONOOXYGENASE HYDROXYLASE (protein)
Unique Ligands	FE

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1MXR \| pdb_00001mxr	Download File View File

High resolution structure of Ribonucleotide reductase R2 from E. coli in its oxidised (Met) form

Andersson, M.A., Hogbom, M., Nordlund, P.

(2003) Proc Natl Acad Sci U S A 100: 3209-3214

Released	2003-03-25
Method	X-RAY DIFFRACTION 1.42 Å
Organisms	Escherichia coli
Macromolecule	Ribonucleotide reductase R2 (protein)
Unique Ligands	FE, GOL, HG

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1OQU \| pdb_00001oqu	Download File View File

A protein coordinated tri-nuclear Fe complex formed during soaking of crystals of the ribonucleotide reductase R2F protein from Corynebacterium Ammoniagenes

Hogbom, M., Nordlund, P.

(2004) FEBS Lett 567: 179-182

Released	2004-04-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Corynebacterium ammoniagenes
Macromolecule	ribonucleotide reductase subunit R2F (protein)
Unique Ligands	ACT, FE, OXY

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1PFR \| pdb_00001pfr	Download File View File

RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 BETA CHAIN

Logan, D.T., Su, X.D., Aberg, A., Regnstrom, K., Hajdu, J., Eklund, H., Nordlund, P.

(1996) Structure 4: 1053-1064

Released	1997-03-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE (protein)
Unique Ligands	FE, HG

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1PHR \| pdb_00001phr	Download File View File

THE CRYSTAL STRUCTURE OF A LOW MOLECULAR PHOSPHOTYROSINE PROTEIN PHOSPHATASE

Su, X.-D., Taddei, N., Stefani, M., Ramponi, G., Nordlund, P.

(1994) Nature 370: 575-578

Released	1995-07-31
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bos taurus
Macromolecule	LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE (protein)
Unique Ligands	SO4

1 to 25 of 284 Structures

Page 1 of 12

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AAZ | pdb_00001aaz

1ABA | pdb_00001aba

1AE7 | pdb_00001ae7

1AV8 | pdb_00001av8

1BIQ | pdb_00001biq

1H78 | pdb_00001h78

1H79 | pdb_00001h79

1H7A | pdb_00001h7a

1H7B | pdb_00001h7b

1HK8 | pdb_00001hk8

1HS6 | pdb_00001hs6

1JPR | pdb_00001jpr

1JQC | pdb_00001jqc

1KGN | pdb_00001kgn

1KGO | pdb_00001kgo

1KGP | pdb_00001kgp

1LP1 | pdb_00001lp1

1MH9 | pdb_00001mh9

1MMO | pdb_00001mmo

1MRR | pdb_00001mrr

1MTY | pdb_00001mty

1MXR | pdb_00001mxr

1OQU | pdb_00001oqu

1PFR | pdb_00001pfr

1PHR | pdb_00001phr