RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Newman, J.A."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 655 Structures.

Refinements

Structure Determination Methodology

experimental (655)

Scientific Name of Source Organism

	Homo sapiens (523)
	Severe acute respiratory syndrome coronavirus 2 (118)
	Lama glama (11)
	Bacillus subtilis (5)
	Moorella thermoacetica (4)
	synthetic construct (4)
	Bacillus subtilis subsp. subtilis str. 168 (3)
	Acetivibrio thermocellus (1)
	Moorella thermoacetica ATCC 39073 (1)

Taxonomy

	Eukaryota (523)
	Riboviria (118)
	Bacteria (14)
	other sequences (4)

Experimental Method

X-RAY DIFFRACTION (655)

Polymer Entity Type

	Protein (655)
	DNA (12)

Refinement Resolution (Å)

	1.0 - 1.5 (152)
	1.5 - 2.0 (323)
	2.0 - 2.5 (124)
	2.5 - 3.0 (37)
	3.0 - 3.5 (14)
	3.5 - 4.0 (4)
	> 4.5 (1)

Release Date

	2005 - 2009 (4)
	2010 - 2014 (26)
	2015 - 2019 (416)
	2020 - 2024 (209)

Enzyme Classification Name

	Hydrolases (478)
	Transferases (21)
	Isomerases (18)
	Oxidoreductases (4)
	Ligases (1)
	Lyases (1)

Symmetry Type

	Asymmetric (629)
	Cyclic (19)
	Dihedral (8)

SCOP Classification

	Alpha and beta proteins (a+b) (366)
	All beta proteins (102)
	All alpha proteins (64)
	Alpha and beta proteins (a/b) (4)
	Artifacts (10)
	Small proteins (1)

AllSelected

1 to 25 of 655 Structures

Page 1 of 27

Sort by

Explore in 3D

2I5B \| pdb_00002i5b	Download File View File

The crystal structure of an ADP complex of Bacillus subtilis pyridoxal kinase provides evidence for the parralel emergence of enzyme activity during evolution

Newman, J.A., Das, S.K., Sedelnikova, S.E., Rice, D.W.

(2006) J Mol Biology 363: 520-530

Released	2006-09-19
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Bacillus subtilis
Macromolecule	Phosphomethylpyrimidine kinase (protein)
Unique Ligands	ADP

Explore in 3D

2VPT \| pdb_00002vpt	Download File View File

Clostridium thermocellum family 3 carbohydrate esterase

Correia, M.A.S., Prates, J.A.M., Bras, J., Fontes, C.M.G.A., Newman, J.A., Lewis, R.J., Gilbert, H.J., Flint, J.E.

(2008) J Mol Biology 379: 64

Released	2008-05-06
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Acetivibrio thermocellus
Macromolecule	LIPOLYTIC ENZYME (protein)
Unique Ligands	CA

Explore in 3D

2VY9 \| pdb_00002vy9	Download File View File

Molecular architecture of the stressosome, a signal integration and transduction hub

Marles-Wright, J., Grant, T., Delumeau, O., van Duinen, G., Firbank, S.J., Lewis, P.J., Murray, J.W., Newman, J.A., Quin, M.B., Race, P.R., Rohou, A., Tichelaar, W., van Heel, M., Lewis, R.J.

(2008) Science 322: 92

Released	2008-10-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Moorella thermoacetica
Macromolecule	ANTI-SIGMA-FACTOR ANTAGONIST (protein)

Explore in 3D

2WA0 \| pdb_00002wa0	Download File View File

Crystal structure of the human MAGEA4

Roos, A.K., Cooper, C.D.O., Ugochukwu, E., W Yue, W., Berridge, G., Elkins, J.M., Pike, A.C.W., Bray, J., Filippakopoulos, P., Muniz, J., Chaikuad, A., Burgess-Brown, N., Arrowsmith, C.H., Weigelt, J., Edwards, A., Bountra, C., von Delft, F., Gileadi, O., Oppermann, U.

(2016) PLoS One 11: 48762

Released	2009-03-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	MELANOMA-ASSOCIATED ANTIGEN 4 (protein)

Explore in 3D

2YPR \| pdb_00002ypr	Download File View File

Crystal structure of the DNA binding ETS domain of human protein FEV

Allerston, C.K., Cooper, C., Vollmar, M., Krojer, T., von Delft, F., Weigelt, J., Arrowsmith, C.H., Bountra, C., Edwards, A., Gileadi, O.

(2015) J Biological Chem 290: 13692

Released	2013-01-16
Method	X-RAY DIFFRACTION 2.64 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN FEV (protein)
Unique Ligands	GOL

Explore in 3D

3K8Z \| pdb_00003k8z	Download File View File

Crystal Structure of Gudb1 a decryptified secondary glutamate dehydrogenase from B. subtilis

Gunka, K., Newman, J.A., Commichau, F.M., Herzberg, C., Rodrigues, C., Hewitt, L., Lewis, R.J., Stulke, J.

(2010) J Mol Biology 400: 815-827

Released	2010-06-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bacillus subtilis
Macromolecule	NAD-specific glutamate dehydrogenase (protein)

Explore in 3D

3K92 \| pdb_00003k92	Download File View File

Crystal structure of a E93K mutant of the majour Bacillus subtilis glutamate dehydrogenase RocG

Gunka, K., Newman, J.A., Commichau, F.M., Herzberg, C., Rodrigues, C., Hewitt, L., Lewis, R.J., Stulke, J.

(2010) J Mol Biology 400: 815-827

Released	2010-06-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacillus subtilis
Macromolecule	NAD-specific glutamate dehydrogenase (protein)
Unique Ligands	PEG

Explore in 3D

3ZKC \| pdb_00003zkc	Download File View File

Crystal structure of the master regulator for biofilm formation SinR in complex with DNA.

Newman, J.A., Rodrigues, C., Lewis, R.J.

(2013) J Biological Chem 288: 10766

Released	2013-03-06
Method	X-RAY DIFFRACTION 3 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	HTH-TYPE TRANSCRIPTIONAL REGULATOR SINR (protein) 5'-D(APAPAPGPTPTPCPTPCPTPTPTPAPGP APGPAPAPCPAPAP)-3' (nucleic acid) 5'-D(APTPTPGPTPTPCPTPCPTPAPAPAPGP APGPAPAPCPTPTP)-3' (nucleic acid)

Explore in 3D

3ZP5 \| pdb_00003zp5	Download File View File

Crystal structure of the DNA binding ETS domain of the human protein FEV in complex with DNA

Newman, J.A., Cooper, C.D.O., Krojer, T., Shrestha, L., Allerston, C.K., Vollmar, M., Arrowsmith, C.H., Burgess-Brown, N., Edwards, A., von Delft, F., Gileadi, O.

(2015) J Biological Chem 290: 13692

Released	2013-03-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	PROTEIN FEV (protein) 5'-D(APCPCPGPGPAPAPGPTPGP)-3' (nucleic acid) 5'-D(CPAPCPTPTPCPCPGPGPTP)-3' (nucleic acid)

Explore in 3D

3ZQ4 \| pdb_00003zq4	Download File View File

Unusual, dual endo- and exo-nuclease activity in the degradosome explained by crystal structure analysis of RNase J1

Newman, J.A., Hewitt, L., Rodrigues, C., Solovyova, A., Harwood, C.R., Lewis, R.J.

(2011) Structure 19: 1241

Released	2011-09-14
Method	X-RAY DIFFRACTION 3 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	RIBONUCLEASE J 1 (protein)
Unique Ligands	CA, ZN

Explore in 3D

3ZT9 \| pdb_00003zt9	Download File View File

The bacterial stressosome: a modular system that has been adapted to control secondary messenger signaling

Quin, M.B., Berrisford, J.M., Newman, J.A., Basle, A., Lewis, R.J., Marles-Wright, J.

(2012) Structure 20: 350

Released	2012-02-22
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Moorella thermoacetica
Macromolecule	SERINE PHOSPHATASE (protein)
Unique Ligands	MN, PEG

Explore in 3D

3ZTA \| pdb_00003zta	Download File View File

The bacterial stressosome: a modular system that has been adapted to control secondary messenger signaling

Quin, M.B., Berrisford, J.M., Newman, J.A., Basle, A., Lewis, R.J., Marles-Wright, J.

(2012) Structure 20: 350

Released	2012-02-22
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Moorella thermoacetica
Macromolecule	ANTI-SIGMA-FACTOR ANTAGONIST (STAS) DOMAIN PROTEIN (protein)

Explore in 3D

3ZTB \| pdb_00003ztb	Download File View File

The bacterial stressosome: a modular system that has been adapted to control secondary messenger signaling

Quin, M.B., Berrisford, J.M., Newman, J.A., Basle, A., Lewis, R.J., Marles-Wright, J.

(2012) Structure 20: 350

Released	2012-02-22
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Moorella thermoacetica
Macromolecule	ANTI-SIGMA-FACTOR ANTAGONIST (STAS) DOMAIN PROTEIN (protein)
Unique Ligands	IOD

Explore in 3D

3ZXN \| pdb_00003zxn	Download File View File

Moorella thermoacetica RsbS S58E

Quin, M.B., Berrisford, J.M., Newman, J.A., Basle, A., Lewis, R.J., Marles-Wright, J.

(2012) Structure 20: 350

Released	2012-02-22
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Moorella thermoacetica ATCC 39073
Macromolecule	ANTI-SIGMA-FACTOR ANTAGONIST (STAS) DOMAIN PROTEIN (protein)
Unique Ligands	SCN

Explore in 3D

4A3R \| pdb_00004a3r	Download File View File

Crystal structure of Enolase from Bacillus subtilis.

Newman, J.A., Hewitt, L., Rodrigues, C., Solovyova, A.S., Harwood, C.R., Lewis, R.J.

(2012) J Mol Biology 416: 121

Released	2012-08-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus subtilis
Macromolecule	ENOLASE (protein)
Unique Ligands	CIT, NA

Explore in 3D

4A3S \| pdb_00004a3s	Download File View File

Crystal structure of PFK from Bacillus subtilis

Newman, J.A., Hewitt, L., Rodrigues, C., Solovyova, A.S., Harwood, C.R., Lewis, R.J.

(2012) J Mol Biology 416: 121

Released	2012-08-15
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacillus subtilis
Macromolecule	6-PHOSPHOFRUCTOKINASE (protein)

Explore in 3D

4AVP \| pdb_00004avp	Download File View File

Crystal structure of the DNA-binding domain of human ETV1.

Allerston, C.K., Cooper, C.D.O., Krojer, T., Chaikuad, A., Filippakopoulos, P., Canning, P., Arrowsmith, C.H., Edwards, A., Bountra, C., von Delft, F., Gileadi, O.

(2015) J Biological Chem 290: 13692

Released	2012-06-20
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Homo sapiens
Macromolecule	ETS TRANSLOCATION VARIANT 1 (protein)
Unique Ligands	EDO

Explore in 3D

4B2O \| pdb_00004b2o	Download File View File

Crystal structure of Bacillus subtilis YmdB, a global regulator of late adaptive responses.

Newman, J.A., Diethmaier, C., Kovacs, A.T., Rodrigues, C., Kuipers, O.P., Stulke, J., Lewis, R.J.

(2014) J Bacteriol 196: 265

Released	2013-07-24
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	YMDB PHOSPHODIESTERASE (protein)
Unique Ligands	FE2, PO4

Explore in 3D

4BNC \| pdb_00004bnc	Download File View File

Crystal structure of the DNA-binding domain of human ETV1 complexed with DNA

Allerston, C.K., Cooper, C.D.O., Krojer, T., Chaikuad, A., Vollmar, M., Froese, D.S., Arrowsmith, C.H., Edwards, A., Bountra, C., von Delft, F., Gileadi, O.

(2015) J Biological Chem 290: 13692

Released	2013-07-03
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	HUMAN ETV1 (protein) 5'-D(APCPCPGPGPAPAPGPTPGP)-3' (nucleic acid) 5'-D(CPAPCPTPTPCPCPGPGPTP)-3' (nucleic acid)

Explore in 3D

4BQA \| pdb_00004bqa	Download File View File

Crystal structure of the ETS domain of human ETS2 in complex with DNA

Newman, J.A., Cooper, C.D.O., Krojer, T., Arrowsmith, C.H., Bountra, C., Edwards, A., Gileadi, O.

(2015) J Biological Chem 290: 8539

Released	2013-06-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN C-ETS-2 (protein) 5'-D(APCPCPGPGPAPAPGPTPGP)-3' (nucleic acid) 5'-D(CPAPCPTPTPCPCPGPGPTP)-3' (nucleic acid)

Explore in 3D

4CDG \| pdb_00004cdg	Download File View File

Crystal structure of the Bloom's syndrome helicase BLM in complex with Nanobody

Newman, J.A., Savitsky, P., Allerston, C.K., Pike, A.C.W., Pardon, E., Steyaert, J., Arrowsmith, C.H., von Delft, F., Bountra, C., Edwards, A., Gileadi, O.

(2015) Nucleic Acids Res 43: 5221

Released	2013-11-13
Method	X-RAY DIFFRACTION 2.794 Å
Organisms	Homo sapiens Lama glama
Macromolecule	BLOOM SYNDROME PROTEIN (protein) NANOBODY (protein)
Unique Ligands	ADP, ZN

Explore in 3D

4CGZ \| pdb_00004cgz	Download File View File

Crystal structure of the Bloom's syndrome helicase BLM in complex with DNA

Newman, J.A., Savitsky, P., Krojer, T., von Delft, F., Arrowsmith, C.H., Edwards, A., Bountra, C., Gileadi, O.

(2015) Nucleic Acids Res 43: 5221

Released	2013-12-11
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	BLOOM'S SYNDROME HELICASE (protein) 5'-D(APGPCPGPTPCPGPAPGPAPTPCP)-3' (nucleic acid) 5'-D(GPAPTPCPTPCPGPAPCPGPCPTPCPDT CPCP*CP)-3' (nucleic acid)
Unique Ligands	ADP, ZN