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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Macedo-Ribeiro, S."

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Search Summary

This query matches 89 Structures.

Refinements

Structure Determination Methodology

experimental (89)

Scientific Name of Source Organism

	Mycolicibacterium hassiacum DSM 44199 (29)
	Homo sapiens (20)
	Curvularia inaequalis (7)
	Candida albicans (4)
	Gallus gallus (4)
	Mycolicibacterium vanbaalenii PYR-1 (3)
	Rubrobacter xylanophilus (3)
	Streptacidiphilus jiangxiensis (3)
	synthetic construct (3)
	Anopheles albimanus (2)

More...

Taxonomy

	Bacteria (49)
	Eukaryota (39)
	other sequences (3)
	Riboviria (1)

Experimental Method

X-RAY DIFFRACTION (89)

Polymer Entity Type

	Protein (89)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (17)
	1.5 - 2.0 (34)
	2.0 - 2.5 (26)
	2.5 - 3.0 (10)
	3.0 - 3.5 (2)

Release Date

	1995 - 1999 (11)
	2000 - 2004 (7)
	2005 - 2009 (10)
	2010 - 2014 (10)
	2015 - 2019 (35)
	2020 - 2024 (16)

Enzyme Classification Name

	Hydrolases (32)
	Transferases (32)
	Oxidoreductases (13)
	Ligases (4)
	Isomerases (1)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (38)
	Cyclic (32)
	Dihedral (19)
	Helical (1)

SCOP Classification

	All beta proteins (14)
	Artifacts (7)
	All alpha proteins (7)
	Alpha and beta proteins (a+b) (7)
	Alpha and beta proteins (a/b) (5)
	Small proteins (1)

AllSelected

1 to 25 of 89 Structures

Page 1 of 4

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1A0L \| pdb_00001a0l	Download File View File

HUMAN BETA-TRYPTASE: A RING-LIKE TETRAMER WITH ACTIVE SITES FACING A CENTRAL PORE

Pereira, P.J.B., Bergner, A., Macedo-Ribeiro, S., Huber, R., Matschiner, G., Fritz, H., Sommerhoff, C.P., Bode, W.

(1998) Nature 392: 306-311

Released	1999-03-23
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	BETA-TRYPTASE (protein)
Unique Ligands	APA

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1CZS \| pdb_00001czs	Download File View File

CRYSTAL STRUCTURE OF THE C2 DOMAIN OF HUMAN COAGULATION FACTOR V: COMPLEX WITH PHENYLMERCURY

Macedo-Ribeiro, S., Bode, W., Huber, R., Kane, W.H., Fuentes-Prior, P.

(1999) Nature 402: 434-439

Released	1999-11-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (COAGULATION FACTOR V) (protein)
Unique Ligands	PHG

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1CZT \| pdb_00001czt	Download File View File

CRYSTAL STRUCTURE OF THE C2 DOMAIN OF HUMAN COAGULATION FACTOR V

Macedo-Ribeiro, S., Bode, W., Huber, R., Kane, W.H., Fuentes-Prior, P.

(1999) Nature 402: 434-439

Released	1999-11-26
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (COAGULATION FACTOR V) (protein)

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1CZV \| pdb_00001czv	Download File View File

CRYSTAL STRUCTURE OF THE C2 DOMAIN OF HUMAN COAGULATION FACTOR V: DIMERIC CRYSTAL FORM

Macedo-Ribeiro, S., Bode, W., Huber, R., Kane, W.H., Fuentes-Prior, P.

(1999) Nature 402: 434-439

Released	1999-11-26
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (COAGULATION FACTOR V) (protein)

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1H98 \| pdb_00001h98	Download File View File

New Insights into Thermostability of Bacterial Ferredoxins: High Resolution Crystal Structure of the Seven-Iron Ferredoxin from Thermus thermophilus

Macedo-Ribeiro, S., Martins, B.M., Pereira, P.J.B., Buse, G., Huber, R., Soulimane, T.

(2001) J Biol Inorg Chem 6: 663

Released	2001-11-27
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Thermus aquaticus
Macromolecule	FERREDOXIN (protein)
Unique Ligands	F3S, SF4

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1HDO \| pdb_00001hdo	Download File View File

Human biliverdin IX beta reductase: NADP complex

Pereira, P.J.B., Macedo-Ribeiro, S., Parraga, A., Perez-Luque, R., Cunningham, O., Darcy, K., Mantle, T.J., Coll, M.

(2001) Nat Struct Biol 8: 215

Released	2001-02-28
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Homo sapiens
Macromolecule	BILIVERDIN IX BETA REDUCTASE (protein)
Unique Ligands	NAP

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1HE2 \| pdb_00001he2	Download File View File

Human biliverdin IX beta reductase: NADP/biliverdin IX alpha ternary complex

Pereira, P.J.B., Macedo-Ribeiro, S., Parraga, A., Perez-Luque, R., Cunningham, O., Darcy, K., Mantle, T.J., Coll, M.

(2001) Nat Struct Biol 8: 215

Released	2001-02-28
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Homo sapiens
Macromolecule	Flavin reductase (NADPH) (protein)
Unique Ligands	BLA, NAP

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1HE3 \| pdb_00001he3	Download File View File

Human biliverdin IX beta reductase: NADP/mesobiliverdin IV alpha ternary complex

Pereira, P.J.B., Macedo-Ribeiro, S., Parraga, A., Perez-Luque, R., Cunningham, O., Darcy, K., Mantle, T.J., Coll, M.

(2001) Nat Struct Biol 8: 215

Released	2001-02-28
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	BILIVERDIN IX BETA REDUCTASE (protein)
Unique Ligands	MBV, NAP

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1HE4 \| pdb_00001he4	Download File View File

Human biliverdin IX beta reductase: NADP/FMN ternary complex

Pereira, P.J.B., Macedo-Ribeiro, S., Parraga, A., Perez-Luque, R., Cunningham, O., Darcy, K., Mantle, T.J., Coll, M.

(2001) Nat Struct Biol 8: 215

Released	2001-02-28
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	BILIVERDIN IX BETA REDUCTASE (protein)
Unique Ligands	FMN, NAP

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1HE5 \| pdb_00001he5	Download File View File

Human biliverdin IX beta reductase: NADP/Lumichrome ternary complex

Pereira, P.J.B., Macedo-Ribeiro, S., Parraga, A., Perez-Luque, R., Cunningham, O., Darcy, K., Mantle, T.J., Coll, M.

(2001) Nat Struct Biol 8: 215

Released	2001-02-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	BILIVERDIN IX BETA REDUCTASE (protein)
Unique Ligands	LUM, NAP

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1JVW \| pdb_00001jvw	Download File View File

TRYPANOSOMA CRUZI MACROPHAGE INFECTIVITY POTENTIATOR (TCMIP)

Pereira, P.J.B., Vega, M.C., Gonzalez-Rey, E., Fernandez-Carazo, R., Macedo-Ribeiro, S., Gomis-Rueth, F.X., Gonzalez, A., Coll, M.

(2002) EMBO Rep 3: 88-94

Released	2002-06-05
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Trypanosoma cruzi
Macromolecule	MACROPHAGE INFECTIVITY POTENTIATOR (protein)

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1VJW \| pdb_00001vjw	Download File View File

STRUCTURE OF OXIDOREDUCTASE (NADP+(A),FERREDOXIN(A))

Macedo-Ribeiro, S., Darimont, B., Sterner, R., Huber, R.

(1996) Structure 4: 1291-1301

Released	1996-12-23
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Thermotoga maritima
Macromolecule	FERREDOXIN(A) (protein)
Unique Ligands	SF4

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1VNE \| pdb_00001vne	Download File View File

CHLOROPEROXIDASE FROM THE FUNGUS CURVULARIA INAEQUALIS: MUTANT D292A

Macedo-Ribeiro, S., Messerschmidt, A.

(1999) J Biol Inorg Chem 4: 209-219

Released	1999-08-11
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Curvularia inaequalis
Macromolecule	VANADIUM CHLOROPEROXIDASE (protein)
Unique Ligands	VO4

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1VNF \| pdb_00001vnf	Download File View File

CHLOROPEROXIDASE FROM THE FUNGUS CURVULARIA INAEQUALIS: MUTANT R360A

Macedo-Ribeiro, S., Messerschmidt, A.

(1999) J Biol Inorg Chem 4: 209-219

Released	1999-08-11
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Curvularia inaequalis
Macromolecule	VANADIUM CHLOROPEROXIDASE (protein)
Unique Ligands	VO4

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1VNG \| pdb_00001vng	Download File View File

CHLOROPEROXIDASE FROM THE FUNGUS CURVULARIA INAEQUALIS: MUTANT H404A

Macedo-Ribeiro, S., Messerschmidt, A.

(1999) J Biol Inorg Chem 4: 209-219

Released	1999-08-11
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Curvularia inaequalis
Macromolecule	VANADIUM CHLOROPEROXIDASE (protein)
Unique Ligands	VO4

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1VNH \| pdb_00001vnh	Download File View File

CHLOROPEROXIDASE FROM THE FUNGUS CURVULARIA INAEQUALIS: MUTANT H496A

Macedo-Ribeiro, S., Messerschmidt, A.

(1999) J Biol Inorg Chem 4: 209-219

Released	1999-08-11
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	Curvularia inaequalis
Macromolecule	VANADIUM CHLOROPEROXIDASE (protein)
Unique Ligands	VO4

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1VNI \| pdb_00001vni	Download File View File

CHLOROPEROXIDASE FROM THE FUNGUS CURVULARIA INAEQUALIS: RECOMBINANT HOLO-CHLOROPEROXIDASE

Macedo-Ribeiro, S., Messerschmidt, A.

(1999) J Biol Inorg Chem 4: 209-219

Released	1999-08-11
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Curvularia inaequalis
Macromolecule	VANADIUM CHLOROPEROXIDASE (protein)
Unique Ligands	VO4

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1VNS \| pdb_00001vns	Download File View File

RECOMBINANT APO-CHLOROPEROXIDASE FROM CURVULARIA INAEQUALIS

Macedo-Ribeiro, S., Messerschmidt, A.

(1999) J Biol Inorg Chem 4: 209-219

Released	1999-08-11
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Curvularia inaequalis
Macromolecule	VANADIUM CHLOROPEROXIDASE (protein)
Unique Ligands	SO4

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1X7S \| pdb_00001x7s	Download File View File

The X-ray crystallographic structure of the amyloidogenic variant TTR Tyr78Phe

Neto-Silva, R.M., Macedo-Ribeiro, S., Pereira, P.J.B., Saraiva, M.J., Damas, A.M.

(2005) Acta Crystallogr D Biol Crystallogr 61: 333-339

Released	2005-03-22
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	Transthyretin (protein)

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1X7T \| pdb_00001x7t	Download File View File

Structure of TTR R104H: a non-amyloidogenic variant with protective clinical effects

Neto-Silva, R.M., Macedo-Ribeiro, S., Pereira, P.J.B., Coll, M., Saraiva, M.J., Damas, A.M.

(2005) Acta Crystallogr D Biol Crystallogr 61: 333-339

Released	2005-03-22
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Transthyretin (protein)

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1XDW \| pdb_00001xdw	Download File View File

NAD+-dependent (R)-2-Hydroxyglutarate Dehydrogenase from Acidaminococcus fermentans

Martins, B.M., Macedo-Ribeiro, S., Bresser, J., Buckel, W., Messerschmidt, A.

(2005) FEBS J 272: 269-281

Released	2005-03-08
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Acidaminococcus fermentans
Macromolecule	NAD+-dependent (R)-2-Hydroxyglutarate Dehydrogenase (protein)

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1Y1D \| pdb_00001y1d	Download File View File

Crystal structure of transthyretin in complex with iododiflunisal

Gales, L., Macedo-Ribeiro, S., Arsequell, G., Valencia, G., Saraiva, M.J., Damas, A.M.

(2005) Biochem J 388: 615-621

Released	2005-07-26
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Transthyretin (protein)
Unique Ligands	FHI

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2GZB \| pdb_00002gzb	Download File View File

Bauhinia bauhinioides cruzipain inhibitor (BbCI)

Hansen, D., Macedo-Ribeiro, S., Navarro, M.V.A.S., Garratt, R.C., Oliva, M.L.V.

(2007) Biochem Biophys Res Commun 360: 735-740

Released	2007-07-17
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bauhinia bauhinioides
Macromolecule	Kunitz-type proteinase inhibitor BbCI (protein)
Unique Ligands	IOD

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2ODY \| pdb_00002ody	Download File View File

Thrombin-bound boophilin displays a functional and accessible reactive-site loop

Macedo-Ribeiro, S., Fuentes-Prior, P., Pereira, P.J.B.

(2008) PLoS One 3: e1624-e1624

Released	2008-01-22
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Bos taurus Rhipicephalus microplus
Macromolecule	Boophilin (protein) Prothrombin (EC 3.4.21.5) (protein)
Unique Ligands	NA, NAG, PO4