RCSB PDB: Search

1BPS \| pdb_00001bps	Download File View File

MINOR CONFORMER OF A BENZO[A]PYRENE DIOL EPOXIDE ADDUCT OF DA IN DUPLEX DNA

Schwartz, J.S., Rice, J.S., Luxon, B.A., Sayer, J.M., Xie, G., Yeh, H.J.C., Liu, X., Jerina, D.M., Gorenstein, D.G.

(1997) Biochemistry 36: 11069-11076

Released	1998-08-19
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	DNA (5'-D(CPTPCPGPGPGPAPCPC)-3') (nucleic acid) DNA (5'-D(GPGPTPCP(BAP)APCPGPAPG)-3') (nucleic acid)
Unique Ligands	BAP

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1EKW \| pdb_00001ekw	Download File View File

NMR STRUCTURE OF A DNA THREE-WAY JUNCTION

Thiviyanathan, V., Luxon, B.A., Leontis, N.B., Donne, D., Gorenstein, D.G.

(1999) J Biomol NMR 14: 209-221

Released	2000-03-20
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(CPGPGPTPGPCPGPTPCPC)-3') (nucleic acid) DNA (5'-D(GPCPTPGPCPCPAPCPCPG)-3') (nucleic acid) DNA (5'-D(GPGPAPCPGPTPCPGPCPAPGPC)-3') (nucleic acid)

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1FYY \| pdb_00001fyy	Download File View File

HPRT GENE MUTATION HOTSPOT WITH A BPDE2(10R) ADDUCT

Volk, D.E., Rice, J.S., Luxon, B.A., Yeh, H.J.C., Liang, C., Xie, G., Sayer, J.M., Jerina, D.M., Gorenstein, D.G.

(2000) Biochemistry 39: 14040-14053

Released	2000-12-06
Method	SOLUTION NMR
Macromolecule	5'-D(TPGPCPCPCPTPTPGPAPCPTPA)-3' (nucleic acid) HPRT DNA WITH BENZO[A]PYRENE-ADDUCTED DA7 (nucleic acid)
Unique Ligands	BAP

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1K1H \| pdb_00001k1h	Download File View File

HETERODUPLEX OF CHIRALLY PURE METHYLPHOSPHONATE/DNA DUPLEX

Thiviyanathan, V., Vyazovkina, K.V., Gozansky, E.K., Bichenchova, E., Abramova, T.V., Luxon, B.A., Lebedev, A.V., Gorenstein, D.G.

(2002) Biochemistry 41: 827-838

Released	2002-06-19
Method	SOLUTION NMR
Macromolecule	5'-D(CP(CMR)P(RMP)P(RMP)P(SMP)P(CMR)P(RMP))-3' (nucleic acid) 5'-D(TPGPTPTPTPGPGP*C)-3' (nucleic acid)

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1K1R \| pdb_00001k1r	Download File View File

HETERODUPLEX OF CHIRALLY PURE R-METHYLPHOSPHONATE/DNA DUPLEX

Thiviyanathan, V., Vyazovkina, K.V., Gozansky, E.K., Bichenkova, E., Abramova, T.V., Luxon, B.A., Lebedev, A.V., Gorenstein, D.G.

(2002) Biochemistry 41: 827-838

Released	2002-06-19
Method	SOLUTION NMR
Macromolecule	5'-D(CP(CMR)P(RMP)P(RMP)P(RMP)P(CMR)P(RMP))-3' (nucleic acid) 5'-D(TPGPTPTPTPGPGP*C)-3' (nucleic acid)

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1K8J \| pdb_00001k8j	Download File View File

NMR STRUCTURE OF THE CK14 DNA DUPLEX: A PORTION OF THE KNOWN NF-kB SEQUENCE CK1

Volk, D.E., Yang, X., Fennewald, S.M., King, D.J., Bassett, S.E., Venkitachalam, S., Herzog, N., Luxon, B.A., Gorenstein, D.G.

(2002) Bioorg Chem 30: 396-419

Released	2003-04-15
Method	SOLUTION NMR
Macromolecule	FIRST STRAND OF CK14 DNA DUPLEX (nucleic acid) SECOND STRAND OF CK14 DNA DUPLEX (nucleic acid)

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1K8L \| pdb_00001k8l	Download File View File

XBY6: An analog of CK14 containing 6 dithiophosphate groups

Volk, D.E., Yang, X., Fennewald, S.M., King, D.J., Bassett, S.E., Venkitachalam, S., Herzog, N., Luxon, B.A., Gorenstein, D.G.

(2002) Bioorg Chem 30: 396-419

Released	2003-04-15
Method	SOLUTION NMR
Macromolecule	FIRST STRAND OF CK14 DNA DUPLEX (nucleic acid) SECOND STRAND OF CK14 DNA DUPLEX (nucleic acid)

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1K8N \| pdb_00001k8n	Download File View File

NMR structure of the XBY2 DNA duplex, an analog of CK14 containing phosphorodithioate groups at C22 and C24

Volk, D.E., Yang, X., Fennewald, S.M., King, D.J., Bassett, S.E., Venkitachalam, S., Herzog, N., Luxon, B.A., Gorenstein, D.G.

(2002) Bioorg Chem 30: 396-419

Released	2003-04-15
Method	SOLUTION NMR
Macromolecule	FIRST STRAND OF CK14 DNA DUPLEX (nucleic acid) SECOND STRAND OF CK14 DNA DUPLEX (nucleic acid)

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1K9H \| pdb_00001k9h	Download File View File

NMR structure of DNA TGTGAGCGCTCACA

Kaluarachchi, K., Gorenstein, D.G., Luxon, B.A.

(2000) J Biomol Struct Dyn Conversation 11: 123-133

Released	2001-11-07
Method	SOLUTION NMR
Macromolecule	5'-D(TPGPTPGPAPGPCPGPCPTPCPAPCPA)-3' (nucleic acid)

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1K9L \| pdb_00001k9l	Download File View File

Solution Structure of DNA TATGAGCGCTCATA

Kaluarachchi, K., Gorenstein, D.G., Luxon, B.A.

(2000) J Biomol Struct Dyn Conversation 11: 123-133

Released	2001-11-07
Method	SOLUTION NMR
Macromolecule	5'-D(TPAPTPGPAPGPCPGPCPTPCPAPTPA)-3' (nucleic acid)

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1KFZ \| pdb_00001kfz	Download File View File

Solution Structure of C-terminal Sem-5 SH3 Domain (Ensemble of 16 Structures)

Ferreon, J.C., Volk, D.E., Luxon, B.A., Gorenstein, D., Hilser, V.J.

(2003) Biochemistry 42: 5582-5591

Released	2003-05-20
Method	SOLUTION NMR
Organisms	Caenorhabditis elegans
Macromolecule	SEX MUSCLE ABNORMAL PROTEIN 5 (protein)

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1N8C \| pdb_00001n8c	Download File View File

Solution Structure of a Cis-Opened (10R)-N6-Deoxyadenosine Adduct of (9S,10R)-(9,10)-Epoxy-7,8,9,10-tetrahydrobenzo[a]pyrene in a DNA Duplex

Volk, D.E., Thiviyanathan, V., Rice, J.S., Luxon, B.A., Shah, J.H., Yagi, H., Sayer, J.M., Yeh, H.J.C., Jerina, D.M., Gorenstein, D.G.

(2003) Biochemistry 42: 1410-1420

Released	2003-02-14
Method	SOLUTION NMR
Macromolecule	5'-D(CPCPTPCPGPTPGPAPCPCPG)-3' (nucleic acid) 5'-D(CPGPGPTPCPAPCPGPAPGPG)-3' (nucleic acid)
Unique Ligands	TBC

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1OZO \| pdb_00001ozo	Download File View File

Three-dimensional solution structure of apo-S100P protein determined by NMR spectroscopy

Lee, Y.-C., Volk, D.E., Thiviyanathan, V., Kleerekoper, Q., Gribenko, A.V., Zhang, S., Gorenstein, D.G., Makhatadze, G.I., Luxon, B.A.

(2004) J Biomol NMR 29: 399-402

Released	2004-04-20
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	S-100P protein (protein)

1BPS | pdb_00001bps

MINOR CONFORMER OF A BENZO[A]PYRENE DIOL EPOXIDE ADDUCT OF DA IN DUPLEX DNA

1EKW | pdb_00001ekw

NMR STRUCTURE OF A DNA THREE-WAY JUNCTION

1FYY | pdb_00001fyy

HPRT GENE MUTATION HOTSPOT WITH A BPDE2(10R) ADDUCT

1K1H | pdb_00001k1h

HETERODUPLEX OF CHIRALLY PURE METHYLPHOSPHONATE/DNA DUPLEX

1K1R | pdb_00001k1r

HETERODUPLEX OF CHIRALLY PURE R-METHYLPHOSPHONATE/DNA DUPLEX

1K8J | pdb_00001k8j

NMR STRUCTURE OF THE CK14 DNA DUPLEX: A PORTION OF THE KNOWN NF-kB SEQUENCE CK1

1K8L | pdb_00001k8l

XBY6: An analog of CK14 containing 6 dithiophosphate groups

1K8N | pdb_00001k8n

NMR structure of the XBY2 DNA duplex, an analog of CK14 containing phosphorodithioate groups at C22 and C24

1K9H | pdb_00001k9h

NMR structure of DNA TGTGAGCGCTCACA

1K9L | pdb_00001k9l

Solution Structure of DNA TATGAGCGCTCATA

1KFZ | pdb_00001kfz

Solution Structure of C-terminal Sem-5 SH3 Domain (Ensemble of 16 Structures)

1N8C | pdb_00001n8c

Solution Structure of a Cis-Opened (10R)-N6-Deoxyadenosine Adduct of (9S,10R)-(9,10)-Epoxy-7,8,9,10-tetrahydrobenzo[a]pyrene in a DNA Duplex

1OZO | pdb_00001ozo

Three-dimensional solution structure of apo-S100P protein determined by NMR spectroscopy

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1BPS | pdb_00001bps

1EKW | pdb_00001ekw

1FYY | pdb_00001fyy

1K1H | pdb_00001k1h

1K1R | pdb_00001k1r

1K8J | pdb_00001k8j

1K8L | pdb_00001k8l

1K8N | pdb_00001k8n

1K9H | pdb_00001k9h

1K9L | pdb_00001k9l

1KFZ | pdb_00001kfz

1N8C | pdb_00001n8c

1OZO | pdb_00001ozo