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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Luo, Y."

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Search Summary

This query matches 36 Structures.

Refinements

Structure Determination Methodology

experimental (36)

Scientific Name of Source Organism

	Homo sapiens (26)
	synthetic construct (9)
	Geobacter sulfurreducens (2)
	Arabidopsis thaliana (1)
	Danio rerio (1)
	Hepatitis C virus (isolate EUH1480) (1)
	Schizosaccharomyces pombe 972h- (1)
	Staphylococcus aureus subsp. aureus str. Newman (1)
	Sus scrofa (1)

Taxonomy

	Eukaryota (30)
	other sequences (9)
	Bacteria (3)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (28)
	ELECTRON MICROSCOPY (7)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (36)
	DNA (1)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (8)
	2.0 - 2.5 (12)
	2.5 - 3.0 (5)
	3.0 - 3.5 (6)
	3.5 - 4.0 (2)

Release Date

	2010 - 2014 (7)
	2015 - 2019 (12)
	2020 - 2024 (12)
	2025 - 2029 (5)

Enzyme Classification Name

	Hydrolases (15)
	Transferases (4)

Membrane Protein Annotation

	MemProtMD (6)
	OPM (6)
	PDBTM (6)
	mpstruc (6)

Symmetry Type

	Asymmetric (18)
	Cyclic (18)

SCOP Classification

	All beta proteins (5)
	Alpha and beta proteins (a+b) (4)
	Artifacts (4)
	All alpha proteins (4)

AllSelected

1 to 25 of 36 Structures

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2M6X \| pdb_00002m6x	Download File View File

Structure of the p7 channel of Hepatitis C virus, genotype 5a

OuYang, B., Chou, J.J.

(2013) Nature 498: 521-525

Released	2013-06-12
Method	SOLUTION NMR
Organisms	Hepatitis C virus (isolate EUH1480)
Macromolecule	p7 (protein)

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3T6R \| pdb_00003t6r	Download File View File

Structure of UHRF1 in complex with unmodified H3 N-terminal tail

Xie, S., Jakoncic, J., Qian, C.M.

(2012) J Mol Biology 415: 318-328

Released	2011-11-23
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase UHRF1 (protein) Histone H3.1t N-terminal peptide (protein)
Unique Ligands	MG, ZN

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4GXO \| pdb_00004gxo	Download File View File

Crystal structure of Staphylococcus aureus protein SarZ mutant C13E

Sun, F., Ding, Y., Ji, Q., Liang, Z., Deng, X., Wong, C.C., Yi, C., Zhang, L., Xie, S., Alvarez, S., Hicks, L.M., Luo, C., Jiang, H., Lan, L., He, C.

(2012) Proc Natl Acad Sci U S A 109: 15461-15466

Released	2012-09-26
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Staphylococcus aureus subsp. aureus str. Newman
Macromolecule	MarR family regulatory protein (protein)
Unique Ligands	GOL

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4MQV \| pdb_00004mqv	Download File View File

Crystal complex of Rpa32c and Smarcal1 N-terminus

Xie, S., Qian, C.M.

(2014) FEBS J 281: 3382-3396

Released	2014-07-02
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Replication protein A 32 kDa subunit (protein) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 (protein)

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4O60 \| pdb_00004o60	Download File View File

Structure of ankyrin repeat protein

Ethayathulla, A.S., Guan, L.

(2015) Sci Rep 5: 8070-8070

Released	2015-03-25
Method	X-RAY DIFFRACTION 2.52 Å
Organisms	synthetic construct
Macromolecule	ANK-N5C-317 (protein)

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4OUL \| pdb_00004oul	Download File View File

Crystal structure of human Caprin-2 C1q domain

Song, X., Li, L.

(2014) J Biological Chem 289: 34104-34113

Released	2014-10-29
Method	X-RAY DIFFRACTION 1.949 Å
Organisms	Homo sapiens
Macromolecule	Caprin-2 (protein)
Unique Ligands	CA, GOL

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4OUM \| pdb_00004oum	Download File View File

Crystal structure of human Caprin-2 C1q domain

Song, X., Li, L.

(2014) J Biological Chem 289: 34104-34113

Released	2014-10-29
Method	X-RAY DIFFRACTION 1.491 Å
Organisms	Homo sapiens
Macromolecule	Caprin-2 (protein)
Unique Ligands	FLC, IPA, PG4

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4OUS \| pdb_00004ous	Download File View File

Crystal structure of zebrafish Caprin-2 C1q domain

Song, X., Li, L.

(2014) J Biological Chem 289: 34104-34113

Released	2014-10-29
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Danio rerio
Macromolecule	Caprin-2 (protein)
Unique Ligands	CA

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4QFV \| pdb_00004qfv	Download File View File

Crystal structure of a unique ankyrin

Ethayathulla, A.S., Tikhonova, E.B., Guan, L.

(2015) Sci Rep 5: 8070-8070

Released	2015-05-06
Method	X-RAY DIFFRACTION 1.999 Å
Organisms	synthetic construct
Macromolecule	ANK-N5C-281 (protein)
Unique Ligands	ACT

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4XHT \| pdb_00004xht	Download File View File

Crystal structure of Timeless_PAB domain native form

Xie, S., Qian, C.

(2015) Mol Cell 60: 163-176

Released	2015-09-30
Method	X-RAY DIFFRACTION 1.651 Å
Organisms	Homo sapiens
Macromolecule	Protein timeless homolog (protein)

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4XHU \| pdb_00004xhu	Download File View File

The complex structure of Timeless_PAB and PARP-1_catalytic domain

Xie, S., Qian, C.

(2015) Mol Cell 60: 163-176

Released	2015-09-30
Method	X-RAY DIFFRACTION 2.089 Å
Organisms	Homo sapiens
Macromolecule	Poly [ADP-ribose] polymerase 1 (protein) Protein timeless homolog (protein)
Unique Ligands	ACT, CA, GOL

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4XHW \| pdb_00004xhw	Download File View File

Crystal structure of Timeless_PAB domain in SeMet-labelled form

Xie, S., Qian, C.

(2015) Mol Cell 60: 163-176

Released	2015-09-30
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Homo sapiens
Macromolecule	Protein timeless homolog (protein)

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4ZDT \| pdb_00004zdt	Download File View File

Crystal structure of the RING finger domain of Slx1 in complex with the C-terminal domain of Slx4

Lian, F.M., Xie, S., Qian, C.M.

(2016) Sci Rep 6: 19331-19331

Released	2016-02-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Schizosaccharomyces pombe 972h-
Macromolecule	Structure-specific endonuclease subunit slx1 (protein) Structure-specific endonuclease subunit slx4 (protein)
Unique Ligands	GOL, SO4, ZN

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5GJK \| pdb_00005gjk	Download File View File

Crystal Structure of BAF47 and BAF155 Complex

Yan, L., Qian, C.

(2017) J Mol Biology 429: 1650-1660

Released	2017-06-07
Method	X-RAY DIFFRACTION 2.052 Å
Organisms	Homo sapiens
Macromolecule	SWI/SNF complex subunit SMARCC1 (protein) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 (protein)
Unique Ligands	GOL, PO4

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5TBM \| pdb_00005tbm	Download File View File

Crystal structure of PT2385 bound to HIF2a-B:ARNT-B complex

Du, X.

(2016) Cancer Res 76: 5491-5500

Released	2016-09-21
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Aryl hydrocarbon receptor nuclear translocator (protein) Endothelial PAS domain-containing protein 1 (protein)
Unique Ligands	79A

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5WYM \| pdb_00005wym	Download File View File

Crystal structure of an anti-connexin26 scFv

Li, S., Xu, L.

(2017) Front Mol Neurosci 10: 298-298

Released	2018-01-24
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	anti-connexin26 scFv,Ig heavy chain,Linker,anti-connexin26 scFv,Ig light chain (protein)

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5YDR \| pdb_00005ydr	Download File View File

Structure of DNMT1 RFTS domain in complex with ubiquitin

Qian, C.

(2018) Nucleic Acids Res 46: 3218-3231

Released	2018-02-21
Method	X-RAY DIFFRACTION 2.003 Å
Organisms	Homo sapiens
Macromolecule	DNA (cytosine-5)-methyltransferase 1 (protein) Polyubiquitin-B (protein)
Unique Ligands	PO4, ZN

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5Z65 \| pdb_00005z65	Download File View File

Crystal structure of porcine aminopeptidase N ectodomain in functional form

Sun, Y.G., Li, R., Jiang, L.G., Qiao, S.L., Zhang, G.P.

(2018) Int J Biol Macromol 117: 704-712

Released	2019-01-02
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Sus scrofa
Macromolecule	Aminopeptidase (protein)
Unique Ligands	NAG, ZN
Unique branched monosaccharides	NAG

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6JXR \| pdb_00006jxr	Download File View File

Structure of human T cell receptor-CD3 complex

Dong, D., Zheng, L., Lin, J., Zhu, Y., Li, N., Zhang, B., Xie, S., Zheng, J., Wang, Y., Gao, N., Huang, Z.

(2019) Nature 573: 546-552

Released	2019-09-11
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 6

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7CNA \| pdb_00007cna	Download File View File

Crystal structure of Spindlin1/C11orf84 complex bound to histone H3K4me3K9me3 peptide

Qian, C.M.

(2021) Nat Commun 12: 949-949

Released	2021-01-13
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	ALA-ARG-THR-M3L-GLN-THR-ALA-ARG-M3L-SER-GLY (protein) ALA-ARG-THR-M3L-GLN-THR-ALA-ARG-M3L-SER-THR (protein) Spindlin interactor and repressor of chromatin-binding protein (protein) Spindlin-1 (protein)
Unique Ligands	BEN, CL, GOL

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7F53 \| pdb_00007f53	Download File View File

Cryo-EM structure of a-MSH-MC4R-Gs_Nb35 complex

Zhang, H., Chen, L., Mao, C., Shen, Q., Yang, D., Shen, D., Qin, J.

(2021) Cell Res 31: 1163-1175

Released	2021-11-03
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 6
Unique Ligands	CA

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7F54 \| pdb_00007f54	Download File View File

Cryo-EM structure of afamelanotide-MC4R-Gs_Nb35 complex

Zhang, H., Chen, L., Mao, C., Shen, Q., Yang, D., Shen, D., Qin, J.

(2021) Cell Res 31: 1163-1175

Released	2021-11-03
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 6
Unique Ligands	CA

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7F55 \| pdb_00007f55	Download File View File

Cryo-EM structure of bremelanotide-MC4R-Gs_Nb35 complex

Zhang, H., Chen, L., Mao, C., Shen, Q., Yang, D., Shen, D., Qin, J.

(2021) Cell Res 31: 1163-1175

Released	2021-11-03
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 6
Unique Ligands	CA

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7F58 \| pdb_00007f58	Download File View File

Cryo-EM structure of THIQ-MC4R-Gs_Nb35 complex

Zhang, H., Chen, L., Mao, C., Shen, Q., Yang, D., Shen, D., Qin, J.

(2021) Cell Res 31: 1163-1175

Released	2021-11-03
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Isoform Gnas-2 of Guanine nucleotide-binding protein G(s) subunit alpha isoforms short (protein) Melanocortin receptor 4 (protein) Nanobody35 (protein)
Unique Ligands	1I8, CA

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8HMH \| pdb_00008hmh	Download File View File

The closed state of RGLG2-VWA

Wang, Q.

(2024) Biochim Biophys Acta Proteins Proteom 1872: 140966-140966

Released	2023-12-27
Method	X-RAY DIFFRACTION 2.56 Å
Organisms	Arabidopsis thaliana
Macromolecule	E3 ubiquitin-protein ligase RGLG2 (protein)
Unique Ligands	MG

1 to 25 of 36 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2M6X | pdb_00002m6x

3T6R | pdb_00003t6r

4GXO | pdb_00004gxo

4MQV | pdb_00004mqv

4O60 | pdb_00004o60

4OUL | pdb_00004oul

4OUM | pdb_00004oum

4OUS | pdb_00004ous

4QFV | pdb_00004qfv

4XHT | pdb_00004xht

4XHU | pdb_00004xhu

4XHW | pdb_00004xhw

4ZDT | pdb_00004zdt

5GJK | pdb_00005gjk

5TBM | pdb_00005tbm

5WYM | pdb_00005wym

5YDR | pdb_00005ydr

5Z65 | pdb_00005z65

6JXR | pdb_00006jxr

7CNA | pdb_00007cna

7F53 | pdb_00007f53

7F54 | pdb_00007f54

7F55 | pdb_00007f55

7F58 | pdb_00007f58

8HMH | pdb_00008hmh