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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Li, K."

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Search Summary

This query matches 350 Structures.

Refinements

Structure Determination Methodology

experimental (350)

Scientific Name of Source Organism

	Homo sapiens (136)
	synthetic construct (42)
	Mus musculus (36)
	Plasmodium falciparum NF54 (22)
	Severe acute respiratory syndrome coronavirus 2 (22)
	Escherichia coli K-12 (18)
	Escherichia coli (14)
	Bos taurus (9)
	Staphylococcus aureus (8)
	Caenorhabditis elegans (7)

More...

Taxonomy

	Eukaryota (218)
	Bacteria (76)
	Riboviria (60)
	other sequences (42)
	Varidnaviria (6)
	Duplodnaviria (3)
	Archaea (1)

Experimental Method

	X-RAY DIFFRACTION (270)
	ELECTRON MICROSCOPY (80)

Polymer Entity Type

	Protein (335)
	RNA (12)
	DNA (10)

Refinement Resolution (Å)

	1.0 - 1.5 (19)
	1.5 - 2.0 (68)
	2.0 - 2.5 (89)
	2.5 - 3.0 (95)
	3.0 - 3.5 (44)
	3.5 - 4.0 (22)
	4.0 - 4.5 (5)
	> 4.5 (8)

Release Date

	2005 - 2009 (6)
	2010 - 2014 (46)
	2015 - 2019 (74)
	2020 - 2024 (196)
	2025 - 2029 (28)

Enzyme Classification Name

	Transferases (119)
	Hydrolases (46)
	Oxidoreductases (30)
	Isomerases (5)
	Ligases (2)
	Translocases (1)

Membrane Protein Annotation

	PDBTM (18)
	OPM (8)
	mpstruc (10)
	MemProtMD (7)

Symmetry Type

	Asymmetric (214)
	Cyclic (76)
	Icosahedral (32)
	Dihedral (20)
	Helical (1)

SCOP Classification

	All alpha proteins (22)
	Alpha and beta proteins (a+b) (24)
	Alpha and beta proteins (a/b) (20)
	All beta proteins (8)
	Multi-domain proteins (alpha and beta) (4)
	Artifacts (4)

AllSelected

1 to 25 of 350 Structures

Page 1 of 14

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1ZX2 \| pdb_00001zx2	Download File View File

Crystal Structure of Yeast UBP3-associated Protein BRE5

Li, K., Zhao, K., Ossareh-Nazari, B., Da, G., Dargemont, C., Marmorstein, R.

(2005) J Biological Chem 280: 29176-29185

Released	2005-06-21
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	UBP3-associated protein BRE5 (protein)

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2JKI \| pdb_00002jki	Download File View File

Complex of Hsp90 N-terminal and Sgt1 CS domain

Zhang, M., Pearl, L.H.

(2008) EMBO J 27: 2789

Released	2008-10-07
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Arabidopsis thaliana Hordeum vulgare
Macromolecule	CYTOSOLIC HEAT SHOCK PROTEIN 90 (protein) SGT1-LIKE PROTEIN (protein)
Unique Ligands	ADP

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2PV0 \| pdb_00002pv0	Download File View File

DNA methyltransferase 3 like protein (DNMT3L)

Cheng, X.

(2007) Nature 448: 714-717

Released	2007-08-14
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Homo sapiens
Macromolecule	DNA (cytosine-5)-methyltransferase 3-like (protein)
Unique Ligands	ZN

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2PVC \| pdb_00002pvc	Download File View File

DNMT3L recognizes unmethylated histone H3 lysine 4

Cheng, X.

(2007) Nature 448: 714-717

Released	2007-08-14
Method	X-RAY DIFFRACTION 3.69 Å
Organisms	Homo sapiens
Macromolecule	DNA (cytosine-5)-methyltransferase 3-like (protein) Histone H3 peptide (protein)
Unique Ligands	ZN

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2QIY \| pdb_00002qiy	Download File View File

yeast Deubiquitinase Ubp3 and Bre5 cofactor complex

Li, K., Liu, X., Marmorstein, R.

(2007) J Mol Biology 372: 194-204

Released	2007-10-30
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	UBP3-associated protein BRE5 (protein) Ubiquitin carboxyl-terminal hydrolase 3 (protein)

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3HAG \| pdb_00003hag	Download File View File

Crystal structure of the Hepatitis E Virus-like Particle

Guu, T.S.Y., Liu, Z., Ye, Q., Mata, D.A., Li, K., Yin, C., Zhang, J., Tao, Y.J.

(2009) Proc Natl Acad Sci U S A 106: 12992-12997

Released	2009-09-01
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Paslahepevirus balayani
Macromolecule	Capsid protein (protein)

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3JBM \| pdb_00003jbm	Download File View File

Electron cryo-microscopy of a virus-like particle of orange-spotted grouper nervous necrosis virus

Xie, J., Li, K., Gao, Y., Huang, R., Lai, Y., Shi, Y., Yang, S., Zhu, G., Zhang, Q., He, J.

(2016) Vet Res 47: 16-16

Released	2016-10-19
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Orange-spotted grouper nervous necrosis virus
Macromolecule	virus-like particle of orange-spotted grouper nervous necrosis virus (protein)

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3MIL \| pdb_00003mil	Download File View File

Crystal structure of isoamyl acetate-hydrolyzing esterase from Saccharomyces cerevisiae

Ma, J., Lu, Q., Yuan, Y., Li, K., Ge, H., Go, Y., Niu, L., Teng, M.

(2011) Proteins 79: 662-668

Released	2010-11-24
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Isoamyl acetate-hydrolyzing esterase (protein)
Unique Ligands	GOL

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3SGT \| pdb_00003sgt	Download File View File

Crystal Structure of E. coli undecaprenyl pyrophosphate synthase in complex with BPH-1299

Cao, R., Liu, Y.-L., Oldfield, E.

(2013) Proc Natl Acad Sci U S A 110: 123-128

Released	2012-12-19
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Escherichia coli O6
Macromolecule	Undecaprenyl pyrophosphate synthase (protein)
Unique Ligands	P09

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3SGV \| pdb_00003sgv	Download File View File

Crystal Structure of E. coli undecaprenyl pyrophosphate synthase in complex with BPH-1290

Cao, R., Liu, Y.-L., Oldfield, E.

(2013) Proc Natl Acad Sci U S A 110: 123-128

Released	2012-12-19
Method	X-RAY DIFFRACTION 1.61 Å
Organisms	Escherichia coli K-12
Macromolecule	Undecaprenyl pyrophosphate synthase (protein)
Unique Ligands	2BJ

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3SGX \| pdb_00003sgx	Download File View File

Crystal Structure of E. coli undecaprenyl pyrophosphate synthase in complex with BPH-1100

Cao, R., Liu, Y.-L., Oldfield, E.

(2013) Proc Natl Acad Sci U S A 110: 123-128

Released	2012-12-19
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Escherichia coli K-12
Macromolecule	Undecaprenyl pyrophosphate synthase (protein)
Unique Ligands	0FW

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3SH0 \| pdb_00003sh0	Download File View File

Crystal Structure of E. coli undecaprenyl pyrophosphate synthase in complex with BPH-1065

Cao, R., Liu, Y.-L., Oldfield, E.

(2013) Proc Natl Acad Sci U S A 110: 123-128

Released	2012-12-19
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Escherichia coli K-12
Macromolecule	Undecaprenyl pyrophosphate synthase (protein)
Unique Ligands	SAX

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3TH8 \| pdb_00003th8	Download File View File

Structure of E. coli undecaprenyl diphosphate synthase complexed with BPH-1063

Cao, R., Zhu, W., Zhang, Y., Oldfield, E.

(2012) ACS Med Chem Lett 3: 402-406

Released	2012-07-04
Method	X-RAY DIFFRACTION 2.114 Å
Organisms	Escherichia coli K-12
Macromolecule	Undecaprenyl pyrophosphate synthase (protein)
Unique Ligands	TH9

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3URK \| pdb_00003urk	Download File View File

IspH in complex with propynyl diphosphate (1061)

Span, I., Wang, K., Wang, W., Zhang, Y., Bacher, A., Eisenreich, W., Schulz, C., Oldfield, E., Groll, M.

(2012) Nat Commun 3: 1042-1042

Released	2012-09-05
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Escherichia coli K-12
Macromolecule	4-hydroxy-3-methylbut-2-enyl diphosphate reductase (protein)
Unique Ligands	0CG, SF4

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3UTC \| pdb_00003utc	Download File View File

Ec_IspH in complex with (E)-4-hydroxybut-3-enyl diphosphate

Span, I., Wang, K., Wang, W., Zhang, Y., Bacher, A., Eisenreich, W., Li, K., Schulz, C., Oldfield, E., Groll, M.

(2012) Nat Commun 3: 1042-1042

Released	2012-09-05
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli K-12
Macromolecule	4-hydroxy-3-methylbut-2-enyl diphosphate reductase (protein)
Unique Ligands	0JX, SF4

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3UTD \| pdb_00003utd	Download File View File

Ec_IspH in complex with 4-oxopentyl diphosphate

Span, I., Wang, K., Wang, W., Zhang, Y., Bacher, A., Eisenreich, W., Schulz, C., Oldfield, E., Groll, M.

(2012) Nat Commun 3: 1042-1042

Released	2012-09-05
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli K-12
Macromolecule	4-hydroxy-3-methylbut-2-enyl diphosphate reductase (protein)
Unique Ligands	0CJ, F3S

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3UV3 \| pdb_00003uv3	Download File View File

Ec_IspH in complex with but-2-ynyl diphosphate (1086)

Span, I., Wang, K., Wang, W., Zhang, Y., Bacher, A., Eisenreich, W., Schulz, C., Oldfield, E., Groll, M.

(2012) Nat Commun 3: 1042-1042

Released	2012-09-05
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli K-12
Macromolecule	4-hydroxy-3-methylbut-2-enyl diphosphate reductase (protein)
Unique Ligands	0CM, SF4

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3UV6 \| pdb_00003uv6	Download File View File

Ec_IspH in complex with 4-hydroxybutyl diphosphate (1301)

Span, I., Wang, K., Wang, W., Zhang, Y., Bacher, A., Eisenreich, W., Schulz, C., Oldfield, E., Groll, M.

(2012) Nat Commun 3: 1042-1042

Released	2012-09-05
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli K-12
Macromolecule	4-hydroxy-3-methylbut-2-enyl diphosphate reductase (protein)
Unique Ligands	0CH, SF4

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3UV7 \| pdb_00003uv7	Download File View File

Ec_IspH in complex with buta-2,3-dienyl diphosphate (1300)

Span, I., Wang, K., Wang, W., Zhang, Y., Bacher, A., Eisenreich, W., Schulz, C., Oldfield, E., Groll, M.

(2012) Nat Commun 3: 1042-1042

Released	2012-09-05
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli K-12
Macromolecule	4-hydroxy-3-methylbut-2-enyl diphosphate reductase (protein)
Unique Ligands	0CN, SF4

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3UWM \| pdb_00003uwm	Download File View File

Ec_IspH in complex with 4-oxobutyl diphosphate (1302)

Span, I., Wang, K., Wang, W., Zhang, Y., Bacher, A., Eisenreich, W., Schulz, C., Oldfield, E., Groll, M.

(2012) Nat Commun 3: 1042-1042

Released	2012-09-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli K-12
Macromolecule	4-hydroxy-3-methylbut-2-enyl diphosphate reductase (protein)
Unique Ligands	0JX, 0K2, SF4

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3WC9 \| pdb_00003wc9	Download File View File

The complex structure of HsSQS wtih ligand, FSPP

Shang, N., Li, Q., Ko, T.P., Chan, H.C., Huang, C.H., Ren, F., Zheng, Y., Zhu, Z., Chen, C.C., Guo, R.T.

(2014) PLoS Pathog 10: e1004114-e1004114

Released	2014-06-18
Method	X-RAY DIFFRACTION 2.82 Å
Organisms	Homo sapiens
Macromolecule	Squalene synthase (protein)
Unique Ligands	FPS

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3WCA \| pdb_00003wca	Download File View File

The complex structure of TcSQS with ligand, FSPP

Shang, N., Li, Q., Ko, T.P., Chan, H.C., Huang, C.H., Oldfield, E., Guo, R.T.

(2014) PLoS Pathog 10: e1004114-e1004114

Released	2014-06-18
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Trypanosoma cruzi strain CL Brener
Macromolecule	Farnesyltransferase, putative (protein)
Unique Ligands	FPS, MG

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3WCB \| pdb_00003wcb	Download File View File

The complex structure of TcSQS with ligand, BPH1237

Shang, N., Li, Q., Ko, T.P., Chan, H.C., Huang, C.H., Ren, F., Zheng, Y., Zhu, Z., Chen, C.C., Guo, R.T.

(2014) PLoS Pathog 10: e1004114-e1004114

Released	2014-06-18
Method	X-RAY DIFFRACTION 3 Å
Organisms	Trypanosoma cruzi strain CL Brener
Macromolecule	Farnesyltransferase, putative (protein)
Unique Ligands	8PH

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3WCC \| pdb_00003wcc	Download File View File

The complex structure of TcSQS with ligand, E5700

Shang, N., Li, Q., Ko, T.P., Chan, H.C., Huang, C.H., Ren, F., Zheng, Y., Zhu, Z., Chen, C.C., Guo, R.T.

(2014) PLoS Pathog 10: e1004114-e1004114

Released	2014-06-18
Method	X-RAY DIFFRACTION 2.32 Å
Organisms	Trypanosoma cruzi strain CL Brener
Macromolecule	Farnesyltransferase, putative (protein)
Unique Ligands	E5S