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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Krupovic, M."

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Search Summary

This query matches 59 Structures.

Refinements

Structure Determination Methodology

experimental (59)

Scientific Name of Source Organism

	Sulfolobus monocaudavirus SMV1 (12)
	Pyrobaculum calidifontis (4)
	Pyrococcus abyssi (4)
	Autographa californica multiple nucleopolyhedrovirus (3)
	Escherichia coli (3)
	Pyrococcus abyssi GE5 (3)
	Saccharolobus islandicus REY15A (3)
	Saccharolobus solfataricus (3)
	Aeropyrum pernix (2)
	Bacillus thuringiensis (2)

More...

Taxonomy

	Archaea (24)
	Viruses incertae sedis (17)
	Bacteria (11)
	Adnaviria (8)
	other sequences (2)
	Varidnaviria (1)

Experimental Method

	ELECTRON MICROSCOPY (53)
	X-RAY DIFFRACTION (6)

Polymer Entity Type

	Protein (59)
	DNA (10)
	RNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (1)
	2.5 - 3.0 (3)
	3.0 - 3.5 (14)
	3.5 - 4.0 (19)
	4.0 - 4.5 (12)
	> 4.5 (7)

Release Date

	2015 - 2019 (7)
	2020 - 2024 (47)
	2025 - 2029 (5)

Membrane Protein Annotation

	OPM (7)
	MemProtMD (2)

Symmetry Type

	Helical (41)
	Cyclic (6)
	Asymmetric (10)
	Icosahedral (2)

AllSelected

1 to 25 of 59 Structures

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3J9X \| pdb_00003j9x	Download File View File

A Virus that Infects a Hyperthermophile Encapsidates A-Form DNA

DiMaio, F., Yu, X., Rensen, E., Krupovic, M., Prangishvili, D., Egelman, E.

(2015) Science 348: 914-917

Released	2015-06-03
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Sulfolobus islandicus rod-shaped virus 2
Macromolecule	coat protein (protein) DNA (nucleic acid)

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5OXE \| pdb_00005oxe	Download File View File

Structure of major capsid protein VP1 of Aeropyrum pernix bacilliform virus 1 APBV1

Huiskonen, J.T., Ptchelkine, D., Phillpps, S.E.V.

(2017) Nat Commun 8: 1436-1436

Released	2017-11-22
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Aeropyrum pernix bacilliform virus 1 Japan/Tanaka/2005
Macromolecule	Major virion protein (protein)

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5W7G \| pdb_00005w7g	Download File View File

An envelope of a filamentous hyperthermophilic virus carries lipids in a horseshoe conformation

Kasson, P., DiMaio, F., Yu, X., Lucas-Staat, S., Krupovic, M., Schouten, S., Prangishvili, D., Egelman, E.

(2017) Elife 6:

Released	2017-07-19
Method	ELECTRON MICROSCOPY 4.5 Å
Organisms	Captovirus AFV1
Macromolecule	ORF132 (protein) ORF140 (protein) DNA (253-MER) (nucleic acid)

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6D5F \| pdb_00006d5f	Download File View File

Cryo-EM reconstruction of membrane-enveloped filamentous virus SFV1 (Sulfolobus filamentous virus 1)

Wang, F., Osinski, T., Liu, Y., Krupovic, M., Prangishvili, D., Egelman, E.H.

(2018) Nat Commun 9: 3360-3360

Released	2018-08-29
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Sulfolobus filamentous virus 1
Macromolecule	Fimbrial protein (protein) DNA (336-MER) (nucleic acid)

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6NAV \| pdb_00006nav	Download File View File

Cryo-EM reconstruction of Sulfolobus islandicus LAL14/1 Pilus

Wang, F., Cvirkaite-Krupovic, V., Prangishvili, D., Krupovic, M., Egelman, E.H.

(2019) Nat Microbiol 4: 1401-1410

Released	2019-05-08
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Saccharolobus islandicus LAL14/1
Macromolecule	M9UD72 (protein)

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6OJ0 \| pdb_00006oj0	Download File View File

Cryo-EM reconstruction of Sulfolobus polyhedral virus 1 (SPV1)

Wang, F., Liu, Y., Conway, J.F., Krupovic, M., Prangishvili, D., Egelman, E.H.

(2019) Proc Natl Acad Sci U S A 116: 22591-22597

Released	2019-10-02
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Sulfolobus polyhedral virus 1
Macromolecule	Structural protein VP4 (protein) Uncharacterized protein (protein)

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6QI5 \| pdb_00006qi5	Download File View File

Near Atomic Structure of an Atadenovirus Shows a possible gene duplication event and Intergenera Variations in Cementing Proteins

Condezo, G.N., Marabini, R., Gomez-Blanco, J., SanMartin, C.

(2021) Sci Adv 7:

Released	2020-08-05
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Lizard adenovirus 2
Macromolecule	Hexon protein (protein) PIIIa (protein) Penton protein (protein) Pre-hexon-linking protein VIII (protein) Protein LH3 (protein)

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6SCF \| pdb_00006scf	Download File View File

A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate

McMahon, S.A., Athukoralage, J.S., Graham, S., White, M.F., Gloster, T.M.

(2020) Nature 577: 572-575

Released	2019-10-30
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Sulfolobus islandicus rod-shaped virus 1 synthetic construct
Macromolecule	Uncharacterized protein (protein) cyclic oligoadenylate (nucleic acid)

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6V7B \| pdb_00006v7b	Download File View File

Cryo-EM reconstruction of Pyrobaculum filamentous virus 2 (PFV2)

Wang, F., Baquero, D.P., Su, Z., Prangishvili, D., Krupovic, M., Egelman, E.H.

(2020) Virus Evol 6: veaa023-veaa023

Released	2020-04-01
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Pyrobaculum filamentous virus 1
Macromolecule	Structural protein VP1 (protein) Structural protein VP2 (protein) A-DNA (nucleic acid)

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6W8U \| pdb_00006w8u	Download File View File

Cryo-EM of the Pyrobaculum arsenaticum pilus

Wang, F., Baquero, D.P., Su, Z., Beltran, L.C., Prangishvili, D., Krupovic, M., Egelman, E.H.

(2020) Nat Commun 11: 3424-3424

Released	2020-07-08
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Pyrobaculum arsenaticum
Macromolecule	pilin (protein)

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6W8X \| pdb_00006w8x	Download File View File

Cryo-EM of the S. solfataricus pilus

Wang, F., Baquero, D.P., Su, Z., Beltran, L.C., Prangishvili, D., Krupovic, M., Egelman, E.H.

(2020) Nat Commun 11: 3424-3424

Released	2020-07-08
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Saccharolobus solfataricus
Macromolecule	pilin (protein)

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6WQ0 \| pdb_00006wq0	Download File View File

Cryo-EM of the S. solfataricus rod-shaped virus, SSRV1

Wang, F., Baquero, D.P., Beltran, L.C., Prangishvili, D., Krupovic, M., Egelman, E.H.

(2020) Proc Natl Acad Sci U S A 117: 19643-19652

Released	2020-07-29
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	unclassified Rudivirus
Macromolecule	Structural protein (protein) DNA (301-MER) (nucleic acid)

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6WQ2 \| pdb_00006wq2	Download File View File

Cryo-EM of the S. islandicus filamentous virus, SIFV

Wang, F., Baquero, D.P., Su, Z., Zheng, W., Prangishvili, D., Krupovic, M., Egelman, E.H.

(2020) Proc Natl Acad Sci U S A 117: 19643-19652

Released	2020-07-29
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Sulfolobus islandicus filamentous virus
Macromolecule	Structural protein MCP1 (protein) Structural protein MCP2 (protein) A-DNA (nucleic acid)

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7RO2 \| pdb_00007ro2	Download File View File

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 1

Wang, F., Cvirkaite-Krupovic, V., Krupovic, M., Egelman, E.H.

(2022) Cell 185: 1297

Released	2022-03-30
Method	ELECTRON MICROSCOPY 5.1 Å
Organisms	Sulfolobus monocaudavirus SMV1
Macromolecule	major capsid protein (protein)

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7RO3 \| pdb_00007ro3	Download File View File

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 2

Wang, F., Cvirkaite-Krupovic, V., Krupovic, M., Egelman, E.H.

(2022) Cell 185: 1297

Released	2022-03-30
Method	ELECTRON MICROSCOPY 4.8 Å
Organisms	Sulfolobus monocaudavirus SMV1
Macromolecule	major capsid protein (protein)

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7RO4 \| pdb_00007ro4	Download File View File

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 3

Wang, F., Cvirkaite-Krupovic, V., Krupovic, M., Egelman, E.H.

(2022) Cell 185: 1297

Released	2022-03-30
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Sulfolobus monocaudavirus SMV1
Macromolecule	major capsid protein (protein)

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7RO5 \| pdb_00007ro5	Download File View File

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 4

Wang, F., Cvirkaite-Krupovic, V., Krupovic, M., Egelman, E.H.

(2022) Cell 185: 1297

Released	2022-03-30
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Sulfolobus monocaudavirus SMV1
Macromolecule	major capsid protein (protein)

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7RO6 \| pdb_00007ro6	Download File View File

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 5

Wang, F., Cvirkaite-Krupovic, V., Krupovic, M., Egelman, E.H.

(2022) Cell 185: 1297

Released	2022-03-30
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Sulfolobus monocaudavirus SMV1
Macromolecule	major capsid protein (protein)

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7ROB \| pdb_00007rob	Download File View File

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 6

Wang, F., Cvirkaite-Krupovic, V., Krupovic, M., Egelman, E.H.

(2022) Cell 185: 1297

Released	2022-03-30
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Sulfolobus monocaudavirus SMV1
Macromolecule	major capsid protein (protein)

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7ROC \| pdb_00007roc	Download File View File

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 7

Wang, F., Cvirkaite-Krupovic, V., Krupovic, M., Egelman, E.H.

(2022) Cell 185: 1297-1307.e11

Released	2022-03-30
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Sulfolobus monocaudavirus SMV1
Macromolecule	major capsid protein (protein)

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7ROD \| pdb_00007rod	Download File View File

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 8

Wang, F., Cvirkaite-Krupovic, V., Krupovic, M., Egelman, E.H.

(2022) Cell 185: 1297-1307.e11

Released	2022-03-30
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Sulfolobus monocaudavirus SMV1
Macromolecule	major capsid protein (protein)

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7ROE \| pdb_00007roe	Download File View File

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 9

Wang, F., Cvirkaite-Krupovic, V., Krupovic, M., Egelman, E.H.

(2022) Cell 185: 1297-1307.e11

Released	2022-03-30
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Sulfolobus monocaudavirus SMV1
Macromolecule	major capsid protein (protein)

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7ROG \| pdb_00007rog	Download File View File

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 10

Wang, F., Cvirkaite-Krupovic, V., Krupovic, M., Egelman, E.H.

(2022) Cell 185: 1297-1307.e11

Released	2022-03-30
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Sulfolobus monocaudavirus SMV1
Macromolecule	major capsid protein (protein)

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7ROH \| pdb_00007roh	Download File View File

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 11

Wang, F., Cvirkaite-Krupovic, V., Krupovic, M., Egelman, E.H.

(2022) Cell 185: 1297-1307.e11

Released	2022-03-30
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Sulfolobus monocaudavirus SMV1
Macromolecule	major capsid protein (protein)

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7ROI \| pdb_00007roi	Download File View File

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 12

Wang, F., Cvirkaite-Krupovic, V., Krupovic, M., Egelman, E.H.

(2022) Cell 185: 1297-1307.e11

Released	2022-03-30
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Sulfolobus monocaudavirus SMV1
Macromolecule	major capsid protein (protein)

1 to 25 of 59 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Membrane Protein Annotation

Symmetry Type

3J9X | pdb_00003j9x

5OXE | pdb_00005oxe

5W7G | pdb_00005w7g

6D5F | pdb_00006d5f

6NAV | pdb_00006nav

6OJ0 | pdb_00006oj0

6QI5 | pdb_00006qi5

6SCF | pdb_00006scf

6V7B | pdb_00006v7b

6W8U | pdb_00006w8u

6W8X | pdb_00006w8x

6WQ0 | pdb_00006wq0

6WQ2 | pdb_00006wq2

7RO2 | pdb_00007ro2

7RO3 | pdb_00007ro3

7RO4 | pdb_00007ro4

7RO5 | pdb_00007ro5

7RO6 | pdb_00007ro6

7ROB | pdb_00007rob

7ROC | pdb_00007roc

7ROD | pdb_00007rod

7ROE | pdb_00007roe

7ROG | pdb_00007rog

7ROH | pdb_00007roh

7ROI | pdb_00007roi