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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Jungnickel, K.E.J."

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Search Summary

This query matches 29 Structures.

Refinements

Structure Determination Methodology

experimental (29)

Scientific Name of Source Organism

	Lama glama (21)
	Escherichia coli (14)
	Homo sapiens (7)
	Gallus gallus (4)
	Escherichia coli K-12 (2)
	Geobacillus kaustophilus HTA426 (2)
	Mus musculus (1)
	Parengyodontium album (1)

Taxonomy

	Eukaryota (27)
	Bacteria (16)

Experimental Method

	X-RAY DIFFRACTION (21)
	ELECTRON MICROSCOPY (8)

Polymer Entity Type

Protein (29)

Refinement Resolution (Å)

	1.5 - 2.0 (5)
	2.0 - 2.5 (6)
	2.5 - 3.0 (10)
	3.0 - 3.5 (5)
	3.5 - 4.0 (2)
	4.0 - 4.5 (1)

Release Date

	2015 - 2019 (7)
	2020 - 2024 (22)

Enzyme Classification Name

Hydrolases (5)

Membrane Protein Annotation

	PDBTM (22)
	mpstruc (16)
	MemProtMD (14)
	OPM (1)

Symmetry Type

Asymmetric (29)

SCOP Classification

	Alpha and beta proteins (a+b) (4)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 25 of 29 Structures

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5NJP \| pdb_00005njp	Download File View File

Mix-and-diffuse serial synchrotron crystallography: structure of N,N',N''-Triacetylchitotriose bound to Lysozyme with 1s time-delay, phased with 1HEW

Oberthuer, D., Meents, A., Beyerlein, K.R., Chapman, H.N., Lieseke, J.

(2017) IUCrJ 4: 769-777

Released	2017-10-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, NA
Unique branched monosaccharides	NAG

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5NJQ \| pdb_00005njq	Download File View File

Mix-and-diffuse serial synchrotron crystallography: structure of N,N',N''-Triacetylchitotriose bound to Lysozyme with 1s time-delay, phased with 4ET8

Oberthuer, D., Meents, A., Beyerlein, K.R., Chapman, H.N., Lieseke, J.

(2017) IUCrJ 4: 769-777

Released	2017-10-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, NA
Unique branched monosaccharides	NAG

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5NJR \| pdb_00005njr	Download File View File

Mix-and-diffuse serial synchrotron crystallography: structure of N,N',N''-Triacetylchitotriose bound to Lysozyme with 50s time-delay, phased with 4ET8

Oberthuer, D., Meents, A., Beyerlein, K.R., Chapman, H.N., Lieseke, J.

(2017) IUCrJ 4: 769-777

Released	2017-10-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, NA
Unique branched monosaccharides	NAG

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5NJS \| pdb_00005njs	Download File View File

Mix-and-diffuse serial synchrotron crystallography: structure of N,N',N''-Triacetylchitotriose bound to Lysozyme with 50s time-delay, phased with 1HEW

Oberthuer, D., Meents, A., Beyerlein, K.R., Chapman, H.N., Lieseke, J.

(2017) IUCrJ 4: 769-777

Released	2017-10-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, NA
Unique branched monosaccharides	NAG

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5OQT \| pdb_00005oqt	Download File View File

Crystal structure of a bacterial cationic amino acid transporter (CAT) homologue

Jungnickel, K.E.J., Newstead, S.

(2018) Nat Commun 9: 550-550

Released	2018-02-14
Method	X-RAY DIFFRACTION 2.86 Å
Organisms	Escherichia coli K-12 Geobacillus kaustophilus HTA426
Macromolecule	Amino acid transporter (protein) Uncharacterized protein YneM (protein)
Unique Ligands	ACT, ALA, CL, CLR, OLC

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6F34 \| pdb_00006f34	Download File View File

Crystal structure of a bacterial cationic amino acid transporter (CAT) homologue bound to Arginine.

Jungnickel, K.E.J., Newstead, S.

(2018) Nat Commun 9: 550-550

Released	2018-02-14
Method	X-RAY DIFFRACTION 3.13 Å
Organisms	Escherichia coli K-12 Geobacillus kaustophilus HTA426
Macromolecule	Amino acid transporter (protein) MgtS (protein)
Unique Ligands	ARG, CLR, OLC

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6FJS \| pdb_00006fjs	Download File View File

Proteinase~K SIRAS phased structure of room-temperature, serially collected synchrotron data

Botha, S., Baitan, D., Jungnickel, K.E.J., Oberthuer, D., Schmidt, C., Stern, S., Wiedorn, M.O., Perbandt, M., Chapman, H.N., Betzel, C.

(2018) IUCrJ 5: 524-530

Released	2018-10-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Parengyodontium album
Macromolecule	Proteinase K (protein)
Unique Ligands	CA

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8B17 \| pdb_00008b17	Download File View File

DtpB-Nb132-AWA

Killer, M., Finocchio, G., Lei, J., Jungnickel, K., Kotov, V., Steinke, J., Bartels, K., Strauss, J., Dupeux, F., Humm, A.S., Cornaciu, I., Marquez, J., Pardon, E., Steyeart, J., Loew, C.

(2023) Cell Rep 42: 112831-112831

Released	2023-08-09
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli Lama glama
Macromolecule	ALA-TRP-ALA (protein) Dipeptide and tripeptide permease B (protein) Nanobody 132 (protein)
Unique Ligands	1PE, D10, D12, GOL, HEX, LMT, OCT, PG4

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8B18 \| pdb_00008b18	Download File View File

DtpB-Nb132-AF

Killer, M., Finocchio, G., Lei, J., Jungnickel, K., Kotov, V., Steinke, J., Bartels, K., Strauss, J., Dupeux, F., Humm, A.S., Cornaciu, I., Marquez, J., Pardon, E., Steyeart, J., Loew, C.

(2023) Cell Rep 42: 112831-112831

Released	2023-08-09
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli Lama glama
Macromolecule	ALA-PHE (protein) Dipeptide and tripeptide permease B (protein) Nanobody 132 (protein)
Unique Ligands	1PE, D10, D12, GOL, HEX, LMT, OCT, PG4

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8B19 \| pdb_00008b19	Download File View File

DtpB-Nb132-AFA

Killer, M., Finocchio, G., Lei, J., Jungnickel, K., Kotov, V., Steinke, J., Bartels, K., Strauss, J., Dupeux, F., Humm, A.S., Cornaciu, I., Marquez, J., Pardon, E., Steyeart, J., Loew, C.

(2023) Cell Rep 42: 112831-112831

Released	2023-08-09
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Escherichia coli Lama glama
Macromolecule	ALA-PHE-ALA (protein) Dipeptide and tripeptide permease B (protein) Nanobody 132 (protein)
Unique Ligands	1PE, D10, D12, GOL, HEX, LMT, OCT, PG4

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8B1A \| pdb_00008b1a	Download File View File

DtpB-Nb132-AI

Killer, M., Finocchio, G., Lei, J., Jungnickel, K., Kotov, V., Steinke, J., Bartels, K., Strauss, J., Dupeux, F., Humm, A.S., Cornaciu, I., Marquez, J., Pardon, E., Steyeart, J., Loew, C.

(2023) Cell Rep 42: 112831-112831

Released	2023-08-09
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Escherichia coli Lama glama
Macromolecule	ALA-ILE (protein) Dipeptide and tripeptide permease B (protein) Nanobody 132 (protein)
Unique Ligands	1PE, D10, D12, GOL, HEX, LMT, OCT, PG4

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8B1B \| pdb_00008b1b	Download File View File

DtpB-Nb132-AL

Killer, M., Finocchio, G., Lei, J., Jungnickel, K., Kotov, V., Steinke, J., Bartels, K., Strauss, J., Dupeux, F., Humm, A.S., Cornaciu, I., Marquez, J., Pardon, E., Steyeart, J., Loew, C.

(2023) Cell Rep 42: 112831-112831

Released	2023-08-09
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli Lama glama
Macromolecule	ALA-LEU (protein) Dipeptide and tripeptide permease B (protein) Nanobody 132 (protein)
Unique Ligands	1PE, D10, D12, GOL, HEX, LMT, OCT, PG4

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8B1C \| pdb_00008b1c	Download File View File

DtpB-Nb132-ALA

Killer, M., Finocchio, G., Lei, J., Jungnickel, K., Kotov, V., Steinke, J., Bartels, K., Strauss, J., Dupeux, F., Humm, A.S., Cornaciu, I., Marquez, J., Pardon, E., Steyeart, J., Loew, C.

(2023) Cell Rep 42: 112831-112831

Released	2023-08-09
Method	X-RAY DIFFRACTION 2.56 Å
Organisms	Escherichia coli Lama glama
Macromolecule	ALA-LEU-ALA (protein) Dipeptide and tripeptide permease B (protein) Nanobody 132 (protein)
Unique Ligands	1PE, D10, D12, GOL, HEX, LMT, OCT, PG4

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8B1D \| pdb_00008b1d	Download File View File

DtpB-Nb132-APF

Killer, M., Finocchio, G., Lei, J., Jungnickel, K., Kotov, V., Steinke, J., Bartels, K., Strauss, J., Dupeux, F., Humm, A.S., Cornaciu, I., Marquez, J., Pardon, E., Steyeart, J., Loew, C.

(2023) Cell Rep 42: 112831-112831

Released	2023-08-09
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli Lama glama
Macromolecule	ALA-PRO-PHE (protein) Dipeptide and tripeptide permease B (protein) Nanobody 132 (protein)
Unique Ligands	1PE, D10, D12, GOL, HEX, LMT, OCT, PG4

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8B1E \| pdb_00008b1e	Download File View File

DtpB-Nb132-AQ

Killer, M., Finocchio, G., Lei, J., Jungnickel, K., Kotov, V., Steinke, J., Bartels, K., Strauss, J., Dupeux, F., Humm, A.S., Cornaciu, I., Marquez, J., Pardon, E., Steyeart, J., Loew, C.

(2023) Cell Rep 42: 112831-112831

Released	2023-08-09
Method	X-RAY DIFFRACTION 2.47 Å
Organisms	Escherichia coli Lama glama
Macromolecule	ALA-GLN (protein) Dipeptide and tripeptide permease B (protein) Nanobody 132 (protein)
Unique Ligands	1PE, D10, D12, GOL, HEX, LMT, OCT, PG4

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8B1F \| pdb_00008b1f	Download File View File

DtpB-Nb132-AV

Killer, M., Finocchio, G., Lei, J., Jungnickel, K., Kotov, V., Steinke, J., Bartels, K., Strauss, J., Dupeux, F., Humm, A.S., Cornaciu, I., Marquez, J., Pardon, E., Steyeart, J., Loew, C.

(2023) Cell Rep 42: 112831-112831

Released	2023-08-09
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Escherichia coli Lama glama
Macromolecule	ALA-VAL (protein) Dipeptide and tripeptide permease B (protein) Nanobody 132 (protein)
Unique Ligands	1PE, D10, D12, GOL, HEX, LMT, OCT, PG4

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8B1G \| pdb_00008b1g	Download File View File

DtpB-Nb132-AW

Killer, M., Finocchio, G., Lei, J., Jungnickel, K., Kotov, V., Steinke, J., Bartels, K., Strauss, J., Dupeux, F., Humm, A.S., Cornaciu, I., Marquez, J., Pardon, E., Steyeart, J., Loew, C.

(2023) Cell Rep 42: 112831-112831

Released	2023-08-09
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli Lama glama
Macromolecule	ALA-TRP (protein) Dipeptide and tripeptide permease B (protein) Nanobody 132 (protein)
Unique Ligands	1PE, D10, D12, GOL, HEX, LMT, OCT, PG4

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8B1H \| pdb_00008b1h	Download File View File

DtpB-Nb132-KV

Killer, M., Finocchio, G., Lei, J., Jungnickel, K., Kotov, V., Steinke, J., Bartels, K., Strauss, J., Dupeux, F., Humm, A.S., Cornaciu, I., Marquez, J., Pardon, E., Steyeart, J., Loew, C.

(2023) Cell Rep 42: 112831-112831

Released	2023-08-09
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli Lama glama
Macromolecule	Dipeptide and tripeptide permease B (protein) LYS-VAL (protein) Nanobody 132 (protein)
Unique Ligands	1PE, D10, D12, GOL, HEX, LMT, OCT, PG4

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8B1I \| pdb_00008b1i	Download File View File

DtpB-Nb132-MS

Killer, M., Finocchio, G., Lei, J., Jungnickel, K., Kotov, V., Steinke, J., Bartels, K., Strauss, J., Dupeux, F., Humm, A.S., Cornaciu, I., Marquez, J., Pardon, E., Steyeart, J., Loew, C.

(2023) Cell Rep 42: 112831-112831

Released	2023-08-09
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Escherichia coli Lama glama
Macromolecule	Dipeptide and tripeptide permease B (protein) MET-SER (protein) Nanobody 132 (protein)
Unique Ligands	1PE, D10, D12, GOL, HEX, LMT, OCT, PG4

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8B1J \| pdb_00008b1j	Download File View File

DtpB-Nb132-SL

Killer, M., Finocchio, G., Lei, J., Jungnickel, K., Kotov, V., Steinke, J., Bartels, K., Strauss, J., Dupeux, F., Humm, A.S., Cornaciu, I., Marquez, J., Pardon, E., Steyeart, J., Loew, C.

(2023) Cell Rep 42: 112831-112831

Released	2023-08-09
Method	X-RAY DIFFRACTION 2.67 Å
Organisms	Escherichia coli Lama glama
Macromolecule	Dipeptide and tripeptide permease B (protein) Nanobody 132 (protein) SER-LEU (protein)
Unique Ligands	1PE, D10, D12, GOL, HEX, LMT, OCT, PG4

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8B1K \| pdb_00008b1k	Download File View File

DtpB-Nb132-NV

Killer, M., Finocchio, G., Lei, J., Jungnickel, K., Kotov, V., Steinke, J., Bartels, K., Strauss, J., Dupeux, F., Humm, A.S., Cornaciu, I., Marquez, J., Pardon, E., Steyeart, J., Loew, C.

(2023) Cell Rep 42: 112831-112831

Released	2023-08-09
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli Lama glama
Macromolecule	ASN-VAL (protein) Dipeptide and tripeptide permease B (protein) Nanobody 132 (protein)
Unique Ligands	1PE, D10, D12, GOL, HEX, LMT, OCT, PG4

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8R8Q \| pdb_00008r8q	Download File View File

Lysosomal peptide transporter

Jungnickel, K.E.J., Loew, C.

(2024) Nat Cell Biol 26: 1047-1061

Released	2024-05-01
Method	ELECTRON MICROSCOPY 4.08 Å
Organisms	Mus musculus
Macromolecule	Glycosylated lysosomal membrane protein (protein) Major facilitator superfamily domain-containing protein 1 (protein)
Unique Ligands	NAG

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8S4U \| pdb_00008s4u	Download File View File

Cryo-EM structure of apo human SLC19A3 in outward-open state

Gabriel, F., Loew, C.

(2024) Nat Commun 15: 8542-8542

Released	2024-10-02
Method	ELECTRON MICROSCOPY 3.09 Å
Organisms	Homo sapiens Lama glama
Macromolecule	Nanobody 3.4 (protein) Thiamine transporter 2 (protein)
Unique Ligands	NAG

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8S5U \| pdb_00008s5u	Download File View File

Cryo-EM structure of thiamine-bound human SLC19A3 in outward-open state

Gabriel, F., Loew, C.

(2024) Nat Commun 15: 8542-8542

Released	2024-10-02
Method	ELECTRON MICROSCOPY 3.28 Å
Organisms	Homo sapiens Lama glama
Macromolecule	Nb3.4 (protein) Thiamine transporter 2 (protein)
Unique Ligands	NAG, VIB

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8S5W \| pdb_00008s5w	Download File View File

Cryo-EM structure of fedratinib-bound human SLC19A3 in inward-open state

Gabriel, F., Loew, C.

(2024) Nat Commun 15: 8542-8542

Released	2024-10-02
Method	ELECTRON MICROSCOPY 3.05 Å
Organisms	Homo sapiens Lama glama
Macromolecule	Nb3.7 (protein) Thiamine transporter 2 (protein)
Unique Ligands	2TA

1 to 25 of 29 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

5NJP | pdb_00005njp

5NJQ | pdb_00005njq

5NJR | pdb_00005njr

5NJS | pdb_00005njs

5OQT | pdb_00005oqt

6F34 | pdb_00006f34

6FJS | pdb_00006fjs

8B17 | pdb_00008b17

8B18 | pdb_00008b18

8B19 | pdb_00008b19

8B1A | pdb_00008b1a

8B1B | pdb_00008b1b

8B1C | pdb_00008b1c

8B1D | pdb_00008b1d

8B1E | pdb_00008b1e

8B1F | pdb_00008b1f

8B1G | pdb_00008b1g

8B1H | pdb_00008b1h

8B1I | pdb_00008b1i

8B1J | pdb_00008b1j

8B1K | pdb_00008b1k

8R8Q | pdb_00008r8q

8S4U | pdb_00008s4u

8S5U | pdb_00008s5u

8S5W | pdb_00008s5w