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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Ishizuka-Katsura, Y."

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Search Summary

This query matches 32 Structures.

Refinements

Structure Determination Methodology

experimental (32)

Scientific Name of Source Organism

	Escherichia coli (16)
	Escherichia coli K-12 (4)
	Homo sapiens (4)
	Thermus thermophilus HB8 (3)
	Saccharomyces cerevisiae S288C (2)
	Candida albicans (1)
	Deinococcus radiodurans (1)
	Pseudomonas aeruginosa PAO1 (1)
	Toxoplasma gondii (1)
	synthetic construct (1)

Taxonomy

	Bacteria (24)
	Eukaryota (8)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (32)

Polymer Entity Type

	Protein (32)
	RNA (18)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (8)
	2.5 - 3.0 (19)
	3.0 - 3.5 (3)
	4.0 - 4.5 (1)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (6)
	2000 - 2004 (6)
	2005 - 2009 (4)
	2010 - 2014 (6)
	2015 - 2019 (8)
	2020 - 2024 (1)

Enzyme Classification Name

Ligases (32)

Symmetry Type

	Asymmetric (32)
	Cyclic (1)

SCOP Classification

	All beta proteins (23)
	Alpha and beta proteins (a/b) (23)
	Artifacts (1)

AllSelected

1 to 25 of 32 Structures

Page 1 of 2

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1EUQ \| pdb_00001euq	Download File View File

CRYSTAL STRUCTURE OF GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH A TRNA-GLN MUTANT AND AN ACTIVE-SITE INHIBITOR

Sherlin, L.D., Bullock, T.L., Newberry, K.J., Lipman, R.S.A., Hou, Y.-M., Beijer, B., Sproat, B.S., Perona, J.J.

(2000) J Mol Biology 299: 431-446

Released	2000-06-04
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Escherichia coli
Macromolecule	GLUTAMINYL-TRNA SYNTHETASE (protein) GLUTAMINYL TRNA (nucleic acid)
Unique Ligands	QSI

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1EUY \| pdb_00001euy	Download File View File

GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH A TRNA MUTANT AND AN ACTIVE SITE INHIBITOR

Sherlin, L.D., Bullock, T.L., Newberry, K.J., Lipman, R.S.A., Hou, Y.-M., Beijer, B., Sproat, B.S., Perona, J.J.

(2000) J Mol Biology 299: 431-446

Released	2000-06-04
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli
Macromolecule	GLUTAMINYL-TRNA SYNTHETASE (protein) GLUTAMINYL TRNA (nucleic acid)
Unique Ligands	QSI

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1EXD \| pdb_00001exd	Download File View File

CRYSTAL STRUCTURE OF A TIGHT-BINDING GLUTAMINE TRNA BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE

Bullock, T.L., Sherlin, L.D., Perona, J.J.

(2000) Nat Struct Biol 7: 497-504

Released	2000-05-15
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli
Macromolecule	GLUTAMINYL-TRNA SYNTHETASE (protein) GLUTAMINE TRNA APTAMER (nucleic acid)
Unique Ligands	AMP, SO4

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1GSG \| pdb_00001gsg	Download File View File

Structure of E.coli glutaminyl-tRNA synthetase complexed with trnagln and ATP at 2.8 Angstroms resolution

Rould, M.A., Perona, J.J., Soell, D., Steitz, T.A.

(1989) Science 246: 1135-1142

Released	1992-02-24
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	GLUTAMINYL-TRNA SYNTHETASE (protein) TRNAGLN (nucleic acid)

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1GTR \| pdb_00001gtr	Download File View File

STRUCTURAL BASIS OF ANTICODON LOOP RECOGNITION BY GLUTAMINYL-TRNA SYNTHETASE

Rould, M.A., Perona, J.J., Steitz, T.A.

(1991) Nature 352: 213-218

Released	1995-02-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	GLUTAMINYL-tRNA SYNTHETASE (protein) RNA (74-MER) (nucleic acid)
Unique Ligands	ATP

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1GTS \| pdb_00001gts	Download File View File

STRUCTURAL BASIS FOR TRANSFER RNA AMINOACEYLATION BY ESCHERICHIA COLI GLUTAMINYL-TRNA SYNTHETASE

Perona, J.J., Steitz, T.A., Rould, M.A.

(1993) Biochemistry 32: 8758-8771

Released	1995-02-07
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (GLUTAMINYL-TRNA SYNTHETASE (E.C.6.1.1.18)) (protein) TRNAGLN (nucleic acid)
Unique Ligands	AMP

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1NYL \| pdb_00001nyl	Download File View File

Unliganded glutaminyl-tRNA synthetase

Sherlin, L.D., Perona, J.P.

(2003) Structure 11: 591-603

Released	2003-02-25
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli
Macromolecule	Glutaminyl-tRNA synthetase (protein)

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1O0B \| pdb_00001o0b	Download File View File

CRYSTAL STRUCTURE OF L-GLUTAMINE AND AMPCPP BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE

Bullock, T.L., Perona, J.J.

(2003) J Mol Biology 328: 395-408

Released	2003-04-15
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli
Macromolecule	Glutaminyl-tRNA synthetase (protein) Glutaminyl tRNA (nucleic acid)
Unique Ligands	AMP, GLN, SO4

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1O0C \| pdb_00001o0c	Download File View File

CRYSTAL STRUCTURE OF L-GLUTAMATE AND AMPCPP BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE

Bullock, T.L., Perona, J.J.

(2003) J Mol Biology 328: 395-408

Released	2003-04-15
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli
Macromolecule	Glutaminyl-tRNA synthetase (protein) Glutaminyl tRNA (nucleic acid)
Unique Ligands	AMP, GLU, SO4

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1QRS \| pdb_00001qrs	Download File View File

GLUTAMINYL-TRNA SYNTHETASE MUTANT D235N COMPLEXED WITH GLUTAMINE TRANSFER RNA

Arnez, J.G., Steitz, T.A.

(1996) Biochemistry 35: 14725-14733

Released	1996-12-07
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (GLUTAMINYL-TRNA SYNTHETASE (E.C.6.1.1.18)) (protein) TRNAGLN2 (nucleic acid)
Unique Ligands	ATP

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1QRT \| pdb_00001qrt	Download File View File

GLUTAMINYL-TRNA SYNTHETASE MUTANT D235G COMPLEXED WITH GLUTAMINE TRANSFER RNA

Arnez, J.G., Steitz, T.A.

(1996) Biochemistry 35: 14725-14733

Released	1996-12-07
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (GLUTAMINYL-TRNA SYNTHETASE (E.C.6.1.1.18)) (protein) TRNAGLN2 (nucleic acid)
Unique Ligands	ATP

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1QRU \| pdb_00001qru	Download File View File

GLUTAMINYL-TRNA SYNTHETASE MUTANT I129T COMPLEXED WITH GLUTAMINE TRANSFER RNA

Arnez, J.G., Steitz, T.A.

(1996) Biochemistry 35: 14725-14733

Released	1996-12-07
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (GLUTAMINYL-TRNA SYNTHETASE (E.C.6.1.1.18)) (protein) TRNAGLN2 (nucleic acid)
Unique Ligands	ATP

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1QTQ \| pdb_00001qtq	Download File View File

GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH TRNA AND AN AMINO ACID ANALOG

Rath, V.L., Silvian, L.F., Beijer, B., Sproat, B.S., Steitz, T.A.

(1998) Structure 6: 439-449

Released	1998-05-27
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (GLUTAMINYL-TRNA SYNTHETASE) (protein) RNA (TRNA GLN II ) (nucleic acid)
Unique Ligands	QSI, SO4

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1ZJW \| pdb_00001zjw	Download File View File

Glutaminyl-tRNA synthetase complexed to glutamine and 2'deoxy A76 glutamine tRNA

Gruic-Sovulj, I., Uter, N., Bullock, T., Perona, J.J.

(2005) J Biological Chem 280: 23978-23986

Released	2005-06-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	Glutaminyl-tRNA synthetase (protein) Glutaminyl-tRNA (nucleic acid)
Unique Ligands	AMP, GLN, SO4

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2HZ7 \| pdb_00002hz7	Download File View File

Crystal structure of the Glutaminyl-tRNA synthetase from Deinococcus radiodurans

Deniziak, M., Sauter, C., Becker, H.D., Paulus, C., Giege, R., Kern, D.

(2007) Nucleic Acids Res 35: 1421-1431

Released	2007-04-24
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Deinococcus radiodurans
Macromolecule	Glutaminyl-tRNA synthetase (protein)

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2RD2 \| pdb_00002rd2	Download File View File

Glutaminyl-tRNA synthetase mutant C229R with bound analog 5'-O-[N-(L-GLUTAMINYL)-SULFAMOYL]ADENOSINE

Bullock, T.L., Perona, J.J.

(2008) Proc Natl Acad Sci U S A 105: 7428-7433

Released	2008-01-15
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli K-12
Macromolecule	Glutaminyl-tRNA synthetase (protein) Glutamine tRNA (nucleic acid)
Unique Ligands	QSI, SO4

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2RE8 \| pdb_00002re8	Download File View File

Glutaminyl-tRNA synthetase mutant C229R with bound analog 5'-O-[N-(L-GLUTAMYL)-SULFAMOYL]ADENOSINE

Bullock, T.L., Perona, J.J.

(2008) Proc Natl Acad Sci U S A 105: 7428-7433

Released	2008-01-15
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli
Macromolecule	Glutaminyl-tRNA synthetase (protein) Glutamine tRNA (nucleic acid)
Unique Ligands	GSU, SO4

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3TL4 \| pdb_00003tl4	Download File View File

Crystal Structure of the tRNA Binding Domain of Glutaminyl-tRNA Synthetase from Saccharomyces cerevisiae

Grant, T.D., Snell, E.H.

(2012) Nucleic Acids Res 40: 3723-3731

Released	2011-11-30
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Glutaminyl-tRNA synthetase (protein)

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4H3S \| pdb_00004h3s	Download File View File

The Structure of Glutaminyl-tRNA Synthetase from Saccharomyces Cerevisiae

Snell, E.H., Grant, T.D.

(2013) J Mol Biology 425: 2480-2493

Released	2013-04-24
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Glutamine-tRNA ligase (protein)
Unique Ligands	ACT, BR, CL, DTT, GOL, ZN

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4JXX \| pdb_00004jxx	Download File View File

Crystal structure of E coli E. coli glutaminyl-tRNA synthetase bound to tRNA(Gln)(CUG) and ATP from novel cryostabilization conditions

Perona, J.J., Rodriguez-Hernandez, A.

(2013) J Mol Biology 425: 3888-3906

Released	2013-05-01
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli K-12
Macromolecule	Glutamine--tRNA ligase (protein) RNA (71-MER) (nucleic acid)
Unique Ligands	ATP, SO4

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4JXZ \| pdb_00004jxz	Download File View File

Structure of E. coli glutaminyl-tRNA synthetase bound to ATP and a tRNA(Gln) acceptor containing a UUG anticodon

Perona, J.J., Rodriguez-Hernandez, A.

(2013) J Mol Biology 425: 3888-3906

Released	2013-05-01
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	Glutamine--tRNA ligase (protein) RNA (71-MER) (nucleic acid)
Unique Ligands	ATP, SO4

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4JYZ \| pdb_00004jyz	Download File View File

Crystal structure of E. coli glutaminyl-tRNA synthetase bound to ATP and native tRNA(Gln) containing the cmnm5s2U34 anticodon wobble base

Perona, J.J., Rodriguez-Hernandez, A.

(2013) J Mol Biology 425: 3888-3906

Released	2013-05-29
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli Escherichia coli K-12
Macromolecule	Glutamine--tRNA ligase (protein) RNA (72-MER) (nucleic acid)
Unique Ligands	ATP, SO4

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4P2B \| pdb_00004p2b	Download File View File

Crystal structure of the apo form of the glutaminyl-tRNA synthetase catalytic domain from Toxoplasma gondii.

van Rooyen, J.M., Belrhali, H., Hakimi, M.A.

To be published

Released	2015-03-18
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Toxoplasma gondii
Macromolecule	Glutamine aminoacyl-tRNA synthetase (protein)
Unique Ligands	SO4

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4R3Z \| pdb_00004r3z	Download File View File

Crystal structure of human ArgRS-GlnRS-AIMP1 complex

Fu, Y., Kim, Y., Cho, Y.

(2014) Proc Natl Acad Sci U S A 111: 15084-15089

Released	2014-10-08
Method	X-RAY DIFFRACTION 4.033 Å
Organisms	Homo sapiens
Macromolecule	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 (protein) Arginine--tRNA ligase, cytoplasmic (protein) Glutamine--tRNA ligase (protein)