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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Huang, R.K."

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Search Summary

This query matches 30 Structures.

Refinements

Structure Determination Methodology

experimental (30)

Scientific Name of Source Organism

	Homo sapiens (17)
	Plasmodium vivax Sal-1 (6)
	Mus musculus (5)
	Human immunodeficiency virus 1 (4)
	Salmonella enterica subsp. enterica serovar Typhimurium (3)
	Severe acute respiratory syndrome coronavirus 2 (2)
	Bacillus subtilis BEST7613 (1)
	Bos taurus (1)
	Byrnievirus HK97 (1)
	Escherichia coli (1)

More...

Taxonomy

	Eukaryota (24)
	Riboviria (7)
	Bacteria (5)
	Duplodnaviria (1)

Experimental Method

	ELECTRON MICROSCOPY (19)
	X-RAY DIFFRACTION (11)

Polymer Entity Type

	Protein (30)
	DNA (1)
	RNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (4)
	2.5 - 3.0 (4)
	3.0 - 3.5 (7)
	3.5 - 4.0 (7)
	4.0 - 4.5 (3)
	> 4.5 (4)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (1)
	2015 - 2019 (17)
	2020 - 2024 (10)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (5)
	Transferases (1)
	Translocases (1)
	Oxidoreductases (1)

Membrane Protein Annotation

	mpstruc (7)
	OPM (3)
	MemProtMD (2)
	PDBTM (2)

Symmetry Type

	Asymmetric (17)
	Cyclic (12)
	Icosahedral (1)

SCOP Classification

	All beta proteins (5)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 25 of 30 Structures

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2OUL \| pdb_00002oul	Download File View File

The Structure of Chagasin in Complex with a Cysteine Protease Clarifies the Binding Mode and Evolution of a New Inhibitor Family

Wang, S.X., Chand, K., Huang, R., Whisstock, J., Jacobelli, J., Fletterick, R.J., Rosenthal, P.J., McKerrow, J.H.

(2007) Structure 15: 535-543

Released	2008-02-26
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Plasmodium falciparum 3D7 Trypanosoma cruzi
Macromolecule	Chagasin (protein) Falcipain 2 (protein)

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3QPR \| pdb_00003qpr	Download File View File

HK97 Prohead I encapsidating inactive virally encoded protease

Huang, R.K., Khayat, R., Lee, K.K., Gertsman, I., Duda, R.L., Hendrix, R.W., Johnson, J.E.

(2011) J Mol Biology 408: 541-554

Released	2011-03-30
Method	X-RAY DIFFRACTION 5.2 Å
Organisms	Byrnievirus HK97
Macromolecule	Major capsid protein (protein)

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5TCP \| pdb_00005tcp	Download File View File

Near-atomic resolution cryo-EM structure of the periplasmic domains of PrgH and PrgK

Worrall, L.J., Hong, C., Vuckovic, M., Bergeron, J.R.C., Huang, R.K., Yu, Z., Strynadka, N.C.J.

(2016) Nature 540: 597-601

Released	2016-12-21
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Lipoprotein PrgK (protein) Protein PrgH (protein)

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5TCQ \| pdb_00005tcq	Download File View File

Near-atomic resolution cryo-EM structure of the Salmonella SPI-1 type III secretion injectisome secretin InvG

Worrall, L.J., Hong, C., Vuckovic, M., Bergeron, J.R.C., Huang, R.K., Yu, Z., Strynadka, N.C.J.

(2016) Nature 540: 597-601

Released	2016-12-21
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Protein InvG (protein)

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5TCR \| pdb_00005tcr	Download File View File

Atomic model of the Salmonella SPI-1 type III secretion injectisome basal body proteins InvG, PrgH, and PrgK

Worrall, L.J., Hong, C., Vuckovic, M., Bergeron, J.R.C., Huang, R.K., Yu, Z., Strynadka, N.C.J.

(2016) Nature 540: 597-601

Released	2016-12-21
Method	ELECTRON MICROSCOPY 6.3 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Lipoprotein PrgK (protein) Protein InvG (protein) Protein PrgH (protein)

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5WC3 \| pdb_00005wc3	Download File View File

SpoIIIAG

Zeytuni, N., Hong, C., Worrall, L.J., Huang, R.K., Yu, Z., Strynadka, N.C.J.

(2017) Proc Natl Acad Sci U S A 114: E7073-E7081

Released	2017-08-16
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Bacillus subtilis BEST7613
Macromolecule	SpoIIIAG, Stage III sporulation engulfment assemblyprotein (protein)

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6B6H \| pdb_00006b6h	Download File View File

The cryo-EM structure of a bacterial class I transcription activation complex

Liu, B., Hong, C., Huang, R., Yu, Z., Steitz, T.A.

(2017) Science 358: 947-951

Released	2017-11-15
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Escherichia coli Escherichia coli K-12 Escherichia coli O157:H7 Escherichia coli S88
Macromolecule	Unique protein chains: 7 Unique nucleic acid chains: 3
Unique Ligands	CMP, MG, ZN

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6BPA \| pdb_00006bpa	Download File View File

Plasmodium vivax reticulocyte binding protein 2b (PvRBP2b) bound to monoclonal antibody 3E9

Gruszczyk, J., Chan, L.J., Tham, W.H.

(2018) Nature 559: 135-139

Released	2018-06-20
Method	X-RAY DIFFRACTION 2.53 Å
Organisms	Mus musculus Plasmodium vivax Sal-1
Macromolecule	Monoclonal antibody 3E9 Fab heavy chain (protein) Monoclonal antibody 3E9 Fab light chain (protein) Reticulocyte binding protein 2, putative (protein)
Unique Ligands	BR

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6BPB \| pdb_00006bpb	Download File View File

Plasmodium vivax invasion blocking monoclonal antibody 4F7

Gruszczyk, J., Chan, L.J., Tham, W.H.

(2018) Nature 559: 135-139

Released	2018-06-20
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Mus musculus
Macromolecule	Monoclonal antibody 4F7 Fab heavy chain (protein) Monoclonal antibody 4F7 Fab light chain (protein)

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6BPC \| pdb_00006bpc	Download File View File

Plasmodium vivax reticulocyte binding protein 2b (PvRBP2b) bound to monoclonal antibody 4F7

Gruszczyk, J., Chan, L.J., Tham, W.H.

(2018) Nature 559: 135-139

Released	2018-06-20
Method	X-RAY DIFFRACTION 2.66 Å
Organisms	Mus musculus Plasmodium vivax Sal-1
Macromolecule	Monoclonal antibody 4F7 Fab heavy chain (protein) Monoclonal antibody 4F7 Fab light chain (protein) Reticulocyte binding protein 2, putative (protein)

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6BPD \| pdb_00006bpd	Download File View File

Plasmodium vivax invasion blocking monoclonal antibody 10B12

Gruszczyk, J., Chan, L.J., Tham, W.H.

(2018) Nature 559: 135-139

Released	2018-06-20
Method	X-RAY DIFFRACTION 2.32 Å
Organisms	Mus musculus
Macromolecule	Monoclonal antibody 10B12 Fab heavy chain (protein) Monoclonal antibody 10B12 Fab light chain (protein)

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6BPE \| pdb_00006bpe	Download File View File

Plasmodium vivax reticulocyte binding protein 2b (PvRBP2b) bound to monoclonal antibody 6H1

Gruszczyk, J., Chan, L.J., Tham, W.H.

(2018) Nature 559: 135-139

Released	2018-06-20
Method	X-RAY DIFFRACTION 3.34 Å
Organisms	Mus musculus Plasmodium vivax Sal-1
Macromolecule	Monoclonal antibody 6H1 Fab heavy chain (protein) Monoclonal antibody 6H1 Fab light chain (protein) Reticulocyte binding protein 2, putative (protein)

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6CES \| pdb_00006ces	Download File View File

Cryo-EM structure of GATOR1-RAG

Shen, K., Huang, R.K., Brignole, E.J., Yu, Z., Sabatini, D.M.

(2018) Nature 556: 64-69

Released	2018-03-28
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Homo sapiens
Macromolecule	GATOR complex protein DEPDC5 (protein) GATOR complex protein NPRL2 (protein) GATOR complex protein NPRL3 (protein) Ras-related GTP-binding protein A (protein) Ras-related GTP-binding protein C (protein)
Unique Ligands	GNP

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6CET \| pdb_00006cet	Download File View File

Cryo-EM structure of GATOR1

Shen, K., Huang, R.K., Brignole, E.J., Yu, Z., Sabatini, D.M.

(2018) Nature 556: 64-69

Released	2018-03-28
Method	ELECTRON MICROSCOPY 4.4 Å
Organisms	Homo sapiens
Macromolecule	GATOR complex protein DEPDC5 (protein) GATOR complex protein NPRL2 (protein) GATOR complex protein NPRL3 (protein)

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6D03 \| pdb_00006d03	Download File View File

Cryo-EM structure of a Plasmodium vivax invasion complex essential for entry into human reticulocytes; one molecule of parasite ligand.

Gruszczyk, J., Huang, R.K., Hong, C., Yu, Z., Tham, W.H.

(2018) Nature 559: 135-139

Released	2018-06-20
Method	ELECTRON MICROSCOPY 3.68 Å
Organisms	Homo sapiens Plasmodium vivax Sal-1
Macromolecule	Reticulocyte binding protein 2, putative (protein) Serotransferrin (protein) Transferrin receptor protein 1 (protein)
Unique Ligands	CA, CO3, FE, NAG
Unique branched monosaccharides	NAG

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6D04 \| pdb_00006d04	Download File View File

Cryo-EM structure of a Plasmodium vivax invasion complex essential for entry into human reticulocytes; two molecules of parasite ligand, subclass 1.

Gruszczyk, J., Huang, R.K., Hong, C., Yu, Z., Tham, W.H.

(2018) Nature 559: 135-139

Released	2018-06-20
Method	ELECTRON MICROSCOPY 3.74 Å
Organisms	Homo sapiens Plasmodium vivax Sal-1
Macromolecule	Reticulocyte binding protein 2, putative (protein) Serotransferrin (protein) Transferrin receptor protein 1 (protein)
Unique Ligands	CA, CO3, FE, NAG
Unique branched monosaccharides	NAG

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6D05 \| pdb_00006d05	Download File View File

Cryo-EM structure of a Plasmodium vivax invasion complex essential for entry into human reticulocytes; two molecules of parasite ligand, subclass 2.

Gruszczyk, J., Huang, R.K., Hong, C., Yu, Z., Tham, W.H.

(2018) Nature 559: 135-139

Released	2018-06-20
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Homo sapiens Plasmodium vivax Sal-1
Macromolecule	Reticulocyte binding protein 2, putative (protein) Serotransferrin (protein) Transferrin receptor protein 1 (protein)
Unique Ligands	CA, CO3, FE, NAG
Unique branched monosaccharides	NAG

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6DU8 \| pdb_00006du8	Download File View File

Human Polycsytin 2-l1

Hulse, R.E., Clapham, D.E., Li, Z., Huang, R.K., Zhang, J.

(2018) Elife 7:

Released	2018-07-25
Method	ELECTRON MICROSCOPY 3.11 Å
Organisms	Homo sapiens
Macromolecule	Polycystic kidney disease 2-like 1 protein (protein)
Unique Ligands	NAG

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6ULG \| pdb_00006ulg	Download File View File

Cryo-EM structure of the FLCN-FNIP2-Rag-Ragulator complex

Shen, K., Rogala, K.B., Yu, Z.H., Sabatini, D.M.

(2019) Cell 179: 1319-1329.e8

Released	2019-11-20
Method	ELECTRON MICROSCOPY 3.31 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 9
Unique Ligands	GDP, GNP, MG

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6WIV \| pdb_00006wiv	Download File View File

Structure of human GABA(B) receptor in an inactive state

Park, J., Fu, Z., Frangaj, A., Liu, J., Mosyak, L., Shen, T., Slavkovich, V.N., Ray, K.M., Taura, J., Cao, B., Geng, Y., Zuo, H., Kou, Y., Grassucci, R., Chen, S., Liu, Z., Lin, X., Williams, J.P., Rice, W.J., Eng, E.T., Huang, R.K., Soni, R.K., Kloss, B., Yu, Z., Javitch, J.A., Hendrickson, W.A., Slesinger, P.A., Quick, M., Graziano, J., Yu, H., Fiehn, O., Clarke, O.B., Frank, J., Fan, Q.R.

(2020) Nature 584: 304-309

Released	2020-07-01
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Homo sapiens
Macromolecule	Gamma-aminobutyric acid type B receptor subunit 1 (protein) Gamma-aminobutyric acid type B receptor subunit 2 (protein)
Unique Ligands	CA, CLR, NAG, U3D, U3G

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6WJD \| pdb_00006wjd	Download File View File

SA-like state of human 26S Proteasome with non-cleavable M1-linked hexaubiquitin and E3 ubiquitin ligase E6AP/UBE3A

Chen, X., Walters, K.J.

(2020) Structure 28: 1206-1217.e4

Released	2020-08-05
Method	ELECTRON MICROSCOPY 4.8 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 33
Unique Ligands	ADP, AGS, MG, ZN

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6WJN \| pdb_00006wjn	Download File View File

SD-like state of human 26S Proteasome with non-cleavable M1-linked hexaubiquitin and E3 ubiquitin ligase E6AP/UBE3A

Chen, X., Walters, K.J.

(2020) Structure 28: 1206-1217.e4

Released	2020-08-05
Method	ELECTRON MICROSCOPY 5.7 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 32
Unique Ligands	AGS, ZN

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7NAB \| pdb_00007nab	Download File View File

Crystal structure of human neutralizing mAb CV3-25 binding to SARS-CoV-2 S MPER peptide 1140-1165

Chen, Y., Tolbert, W.D., Pazgier, M.

(2022) Cell Rep 38: 110210-110210

Released	2021-12-08
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	CV3-25 Fab Heavy Chain (protein) CV3-25 Fab Light Chain (protein) Spike protein S2 (protein)
Unique Ligands	CIT, NA

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7UL0 \| pdb_00007ul0	Download File View File

Crystal structure of SARS-CoV-2 RBD in complex with the ridge-binding nAb EH8 isolated from a nonvaccinated pediatric patient

Chen, Y., Tolbert, W.D., Bai, X., Pazgier, M.

(2023) iScience 26: 105783-105783

Released	2023-03-08
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Heavy chain of EH8 (protein) Light chain of EH8 (protein) Spike protein S1 (protein)
Unique Ligands	NA, NAG
Unique branched monosaccharides	NAG

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7UL1 \| pdb_00007ul1	Download File View File

Crystal structure of SARS-CoV-2 RBD in complex with the neutralizing IGHV3-53-encoded antibody EH3 isolated from a nonvaccinated pediatric patient

Chen, Y., Tolbert, W.D., Pazgier, M.

(2023) iScience 26: 105783-105783

Released	2023-03-08
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus
Macromolecule	Heavy chain of EH3 (protein) Light chain of EH3 (protein) Spike protein S1 (protein)
Unique Ligands	NAG

1 to 25 of 30 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2OUL | pdb_00002oul

3QPR | pdb_00003qpr

5TCP | pdb_00005tcp

5TCQ | pdb_00005tcq

5TCR | pdb_00005tcr

5WC3 | pdb_00005wc3

6B6H | pdb_00006b6h

6BPA | pdb_00006bpa

6BPB | pdb_00006bpb

6BPC | pdb_00006bpc

6BPD | pdb_00006bpd

6BPE | pdb_00006bpe

6CES | pdb_00006ces

6CET | pdb_00006cet

6D03 | pdb_00006d03

6D04 | pdb_00006d04

6D05 | pdb_00006d05

6DU8 | pdb_00006du8

6ULG | pdb_00006ulg

6WIV | pdb_00006wiv

6WJD | pdb_00006wjd

6WJN | pdb_00006wjn

7NAB | pdb_00007nab

7UL0 | pdb_00007ul0

7UL1 | pdb_00007ul1