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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Hayashi, R."

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Search Summary

This query matches 24 Structures.

Refinements

Structure Determination Methodology

experimental (24)

Scientific Name of Source Organism

	Homo sapiens (10)
	Bos taurus (7)
	Schizosaccharomyces pombe 972h- (3)
	synthetic construct (3)
	Aedes aegypti (2)
	Drosophila melanogaster (1)
	Saccharomyces cerevisiae (1)

Taxonomy

	Eukaryota (24)
	other sequences (3)

Experimental Method

	X-RAY DIFFRACTION (21)
	SOLUTION NMR (3)

Polymer Entity Type

Protein (24)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (11)
	2.5 - 3.0 (4)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (7)
	2005 - 2009 (2)
	2010 - 2014 (6)
	2020 - 2024 (9)

Enzyme Classification Name

	Hydrolases (14)
	Lyases (7)
	Transferases (4)

Symmetry Type

	Asymmetric (22)
	Cyclic (4)

SCOP Classification

	Alpha and beta proteins (a+b) (7)
	All beta proteins (1)
	Alpha and beta proteins (a/b) (1)
	Small proteins (1)

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1 to 24 of 24 Structures

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1EIC	Download File View File

CRYSTAL STRUCTURE OF F120A MUTANT OF BOVINE PANCREATIC RIBONUCLEASE A

Chatani, E., Hayashi, R., Moriyama, H., Ueki, T.

(2002) Protein Sci 11: 72-81

Released	2002-02-13
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Bos taurus
Macromolecule	RIBONUCLEASE A (protein)

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1EID	Download File View File

CRYSTAL STRUCTURE OF F120G MUTANT OF BOVINE PANCREATIC RIBONUCLEASE A

Chatani, E., Hayashi, R., Moriyama, H., Ueki, T.

(2002) Protein Sci 11: 72-81

Released	2002-02-13
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Bos taurus
Macromolecule	RIBONUCLEASE A (protein)

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1EIE	Download File View File

CRYSTAL STRUCTURE OF F120W MUTANT OF BOVINE PANCREATIC RIBONUCLEASE A

Chatani, E., Hayashi, R., Moriyama, H., Ueki, T.

(2002) Protein Sci 11: 72-81

Released	2002-02-13
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Bos taurus
Macromolecule	RIBONUCLEASE A (protein)

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1FS3	Download File View File

CRYSTAL STRUCTURE OF WILD-TYPE BOVINE PANCREATIC RIBONUCLEASE A

Chatani, E., Hayashi, R., Moriyama, H., Ueki, T.

(2002) Protein Sci 11: 72-81

Released	2002-02-13
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Bos taurus
Macromolecule	Ribonuclease A (protein)

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1IZP	Download File View File

F46L mutant of bovine pancreatic ribonuclease A

Kadonosono, T., Chatani, E., Hayashi, R., Moriyama, H., Ueki, T.

(2003) Biochemistry 42: 10651-10658

Released	2003-11-25
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Bos taurus
Macromolecule	RIBONUCLEASE A (protein)

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1IZQ	Download File View File

F46V mutant of bovine pancreatic ribonuclease A

Kadonosono, T., Chatani, E., Hayashi, R., Moriyama, H., Ueki, T.

(2003) Biochemistry 42: 10651-10658

Released	2003-11-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bos taurus
Macromolecule	RIBONUCLEASE A (protein)

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1IZR	Download File View File

F46A mutant of bovine pancreatic ribonuclease A

Kadonosono, T., Chatani, E., Hayashi, R., Moriyama, H., Ueki, T.

(2003) Biochemistry 42: 10651-10658

Released	2003-11-25
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Bos taurus
Macromolecule	RIBONUCLEASE A (protein)

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1WPX	Download File View File

Crystal structure of carboxypeptidase Y inhibitor complexed with the cognate proteinase

Mima, J., Hayashida, M., Fujii, T., Narita, Y., Hayashi, R., Ueda, M., Hata, Y.

(2005) J Mol Biology 346: 1323-1334

Released	2005-03-01
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Carboxypeptidase Y (protein) Carboxypeptidase Y inhibitor (protein)
Unique Ligands	NAG, SO4

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2K8F	Download File View File

Structural Basis for the Regulation of p53 Function by p300

Bai, Y., Feng, H., Jenkins, L.M., Durell, S.R., Wiodawer, A., Appella, E.

(2009) Structure 17: 202-210

Released	2009-03-03
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Cellular tumor antigen p53 (protein) Histone acetyltransferase p300 (protein)

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2MWO	Download File View File

Solution structure of 53BP1 tandem Tudor domains in complex with a p53K370me2 peptide

Cui, G., Botuyan, M.V., Mer, G.

(2015) Structure 23: 312-321

Released	2014-12-10
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Cellular tumor antigen p53 (protein) Tumor suppressor p53-binding protein 1 (protein)

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2MWP	Download File View File

Solution structure of 53BP1 tandem Tudor domains in complex with a p53K382me2 peptide

Cui, G., Botuyan, M.V., Mer, G.

(2015) Structure 23: 312-321

Released	2014-12-10
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Cellular tumor antigen p53 (protein) Tumor suppressor p53-binding protein 1 (protein)

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3LGF	Download File View File

Crystal structure of the 53BP1 tandem tudor domain in complex with p53K370me2

Roy, S., Kutateladze, T.G.

(2010) J Mol Biology 398: 489-496

Released	2010-03-23
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	DIMETHYLATED p53 Lysine 370 PEPTIDE (protein) Tumor suppressor p53-binding protein 1 (protein)
Unique Ligands	PGE, SO4

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3LGL	Download File View File

Crystal structure of the 53BP1 tandem tudor domain in complex with p53K382me2

Roy, S., Kutateladze, T.G.

(2010) J Mol Biology 398: 489-496

Released	2010-03-23
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	DIMETHYLATED p53 LYSINE 382 PEPTIDE (protein) Tumor suppressor p53-binding protein 1 (protein)
Unique Ligands	PGE, SO4

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3LH0	Download File View File

Crystal structure of the 53BP1 tandem tudor domain in complex with p53K372me2

Roy, S., Kutateladze, T.G.

(2010) J Mol Biology 398: 489-496

Released	2010-03-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	DIMETHYLATED p53 LYSINE 372 PEPTIDE (protein) Tumor suppressor p53-binding protein 1 (protein)
Unique Ligands	PGE, SO4

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3OQ5	Download File View File

Crystal structure of the 3-MBT domain from human L3MBTL1 in complex with p53K382me1

Roy, S., West, L.E., Weiner, K.L., Hayashi, R., Shi, X., Appella, E., Gozani, O., Kutateladze, T.

(2010) J Biological Chem 285: 37725-37732

Released	2010-09-22
Method	X-RAY DIFFRACTION 2.5005 Å
Organisms	Homo sapiens
Macromolecule	Cellular tumor antigen p53 (protein) Lethal(3)malignant brain tumor-like protein (protein)

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7JW2	Download File View File

Crystal structure of Aedes aegypti Nibbler EXO domain

Xie, W., Sowemimo, I., Hayashi, R., Wang, J., Brennecke, J., Ameres, S.L., Patel, D.J.

(2020) Proc Natl Acad Sci U S A 117: 30370-30379

Released	2021-01-20
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Aedes aegypti
Macromolecule	Exonuclease mut-7 homolog (protein)

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7JW3	Download File View File

Crystal structure of Aedes aegypti Nibbler NTD domain

Xie, W., Sowemimo, I., Hayashi, R., Wang, J., Brennecke, J., Ameres, S.L., Patel, D.J.

(2020) Proc Natl Acad Sci U S A 117: 30370-30379

Released	2021-01-20
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Aedes aegypti
Macromolecule	Exonuclease mut-7 homolog (protein)

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7JW6	Download File View File

Crystal structure of Drosophila Nibbler EXO domain

Xie, W., Sowemimo, I., Hayashi, R., Wang, J., Brennecke, J., Ameres, S.L., Patel, D.J.

(2020) Proc Natl Acad Sci U S A 117: 30370-30379

Released	2021-01-20
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Drosophila melanogaster
Macromolecule	Exonuclease mut-7 homolog (protein)

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7Q72	Download File View File

Structure of Pla1 in complex with Red1

Soni, K., Wild, K., Sinning, I.

(2023) Nat Commun 14: 772-772

Released	2022-12-07
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Schizosaccharomyces pombe 972h-
Macromolecule	NURS complex subunit red1 (protein) Poly(A) polymerase pla1 (protein)

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7Q73	Download File View File

Structure of Pla1 apo

Soni, K., Wild, K., Sinning, I.

(2023) Nat Commun 14: 772-772

Released	2022-12-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Schizosaccharomyces pombe 972h-
Macromolecule	Poly(A) polymerase pla1 (protein)
Unique Ligands	GOL

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7Q74	Download File View File

Structure of Pla1 apo, with a C-terminal deletion

Soni, K., Wild, K., Sinning, I.

(2023) Nat Commun 14: 772-772

Released	2022-12-07
Method	X-RAY DIFFRACTION 2.599 Å
Organisms	Schizosaccharomyces pombe 972h-
Macromolecule	Poly(A) polymerase pla1 (protein)

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7YUZ	Download File View File

Human K-Ras G12D (GDP-bound) in complex with cyclic peptide inhibitor AP8784

Irie, M., Fukami, T.A., Tanada, M., Ohta, A., Torizawa, T.

(2023) J Am Chem Soc 145: 24035-24051

Released	2023-07-26
Method	X-RAY DIFFRACTION 1.878 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	AP8784 (protein) Isoform 2B of GTPase KRas (protein)
Unique Ligands	GDP, IOD, MG

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7YV1	Download File View File

Human K-Ras G12D (GDP-bound) in complex with cyclic peptide inhibitor LUNA18 and KA30L Fab

Irie, M., Fukami, T.A., Matsuo, A., Saka, K., Nishimura, M., Saito, H., Torizawa, T., Tanada, M., Ohta, A.

(2023) J Am Chem Soc 145: 24035-24051

Released	2023-07-26
Method	X-RAY DIFFRACTION 1.454 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Isoform 2B of GTPase KRas (protein) KA30L Fab H-chain (protein) KA30L Fab L-chain (protein) LUNA18 (protein)
Unique Ligands	GDP, MG

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8JJS	Download File View File

Human K-Ras G12D (GDP-bound) in complex with cyclic peptide inhibitor AP10343

Irie, M., Fukami, T.A., Tanada, M., Ohta, A., Torizawa, T.

(2023) J Am Chem Soc 145: 16610-16620

Released	2023-07-26
Method	X-RAY DIFFRACTION 1.534 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Isoform 2B of GTPase KRas (protein) MAA-ILE-SAR-SAR-7T2-SAR-IAE-LEU-MEA-MLE-7TK (protein)
Unique Ligands	GDP, MG, SO4