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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Dhar, A."

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Search Summary

This query matches 21 Structures.

Refinements

Structure Determination Methodology

experimental (21)

Scientific Name of Source Organism

	Homo sapiens (15)
	Arabidopsis thaliana (4)
	Escherichia coli (4)
	Human immunodeficiency virus 1 (2)
	Micromonospora chalcea subsp. izumensis (1)

Taxonomy

	Eukaryota (16)
	Bacteria (5)
	Riboviria (2)

Experimental Method

	ELECTRON MICROSCOPY (12)
	X-RAY DIFFRACTION (9)

Polymer Entity Type

	Protein (21)
	DNA (7)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (1)
	2.5 - 3.0 (3)
	3.0 - 3.5 (10)
	3.5 - 4.0 (3)
	4.0 - 4.5 (1)
	> 4.5 (1)

Release Date

	2015 - 2019 (10)
	2020 - 2024 (11)

Enzyme Classification Name

	Transferases (7)
	Hydrolases (2)
	Oxidoreductases (1)
	Lyases (1)

Symmetry Type

	Asymmetric (12)
	Cyclic (5)
	Helical (4)

SCOP Classification

	All alpha proteins (1)
	Artifacts (1)

AllSelected

1 to 21 of 21 Structures

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5WBH \| pdb_00005wbh	Download File View File

Structure of the FRB domain of mTOR bound to a substrate recruitment peptide of S6K1

Pavletich, N.P., Yang, H.

(2017) Nature 552: 368-373

Released	2017-12-20
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Ribosomal protein S6 kinase beta-1 (protein) Serine/threonine-protein kinase mTOR (protein)

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5WBI \| pdb_00005wbi	Download File View File

Crystal structure of the Arabidopsis thaliana Raptor

Pavletich, N.P., Jiang, X.

(2017) Nature 552: 368-373

Released	2017-12-20
Method	X-RAY DIFFRACTION 3 Å
Organisms	Arabidopsis thaliana
Macromolecule	Regulatory-associated protein of TOR 1 (protein)

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5WBJ \| pdb_00005wbj	Download File View File

Crystal structure of the arabidopsis thaliana Raptor in complex with the TOS peptide of human 4EBP1

Pavletich, N.P., Jiang, X.

(2017) Nature 552: 368-373

Released	2017-12-20
Method	X-RAY DIFFRACTION 3 Å
Organisms	Arabidopsis thaliana Homo sapiens
Macromolecule	Eukaryotic translation initiation factor 4E-binding protein 1 (protein) Regulatory-associated protein of TOR 1 (protein)

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5WBK \| pdb_00005wbk	Download File View File

Crystal structure of the arabidopsis thaliana Raptor in complex with the TOS peptide of human S6K1

Pavletich, N.P., Jiang, X.

(2017) Nature 552: 368-373

Released	2017-12-20
Method	X-RAY DIFFRACTION 3.11 Å
Organisms	Arabidopsis thaliana Homo sapiens
Macromolecule	Regulatory-associated protein of TOR 1 (protein) Ribosomal protein S6 kinase beta-1 (protein)

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5WBL \| pdb_00005wbl	Download File View File

Crystal structure of the Arabidopsis thaliana Raptor in complex with the TOS peptide of human PRAS40

Pavletich, N.P., Jiang, X.

(2017) Nature 552: 368-373

Released	2017-12-20
Method	X-RAY DIFFRACTION 3.35 Å
Organisms	Arabidopsis thaliana Homo sapiens
Macromolecule	Proline-rich AKT1 substrate 1 (protein) Regulatory-associated protein of TOR 1 (protein)

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5WBU \| pdb_00005wbu	Download File View File

Crystal structure of mTOR(deltaN)-mLST8-PRAS40(alpha-helix & beta-strand) complex

Pavletich, N.P., Yang, H.

(2017) Nature 552: 368-373

Released	2017-12-20
Method	X-RAY DIFFRACTION 3.42 Å
Organisms	Homo sapiens
Macromolecule	Proline-rich AKT1 substrate 1 (protein) Serine/threonine-protein kinase mTOR (protein) Target of rapamycin complex subunit LST8 (protein)

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5WBY \| pdb_00005wby	Download File View File

Crystal structure of mTOR(deltaN)-mLST8-PRAS40(beta-strand) complex

Pavletich, N.P., Yang, H.

(2017) Nature 552: 368-373

Released	2017-12-20
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	Proline-rich AKT1 substrate 1 (protein) Serine/threonine-protein kinase mTOR (protein) Target of rapamycin complex subunit LST8 (protein)

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6BCU \| pdb_00006bcu	Download File View File

Cryo-EM structure of the activated RHEB-mTORC1 refined to 3.4 angstrom

Pavletich, N.P., Yang, H.

(2017) Nature 552: 368-373

Released	2017-12-20
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic translation initiation factor 4E-binding protein 1 (protein) GTP-binding protein Rheb (protein) Regulatory-associated protein of mTOR,Regulatory-associated protein of mTOR (protein) Serine/threonine-protein kinase mTOR,Serine/threonine-protein kinase mTOR (protein) Target of rapamycin complex subunit LST8 (protein)
Unique Ligands	ATP, GTP, MG

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6BCX \| pdb_00006bcx	Download File View File

mTORC1 structure refined to 3.0 angstroms

Pavletich, N.P., Yang, H.

(2017) Nature 552: 368-373

Released	2017-12-20
Method	ELECTRON MICROSCOPY 3.23 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic translation initiation factor 4E-binding protein 1 (protein) Regulatory-associated protein of mTOR (protein) Serine/threonine-protein kinase mTOR (protein) Target of rapamycin complex subunit LST8 (protein)
Unique Ligands	ATP, MG

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6MN7 \| pdb_00006mn7	Download File View File

Cryo-EM structure of BG505.SOSIP.664 in complex with BF520.1 antigen binding fragment

Williams, J.A., Lee, K.K., Overbaugh, J.

(2019) Nat Commun 10: 2190-2190

Released	2019-03-06
Method	ELECTRON MICROSCOPY 4.8 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	BF520.1 Fab variable region (protein) Envelope Glycoprotein gp120 (protein) Envelope Glycoprotein gp41 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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6VAA \| pdb_00006vaa	Download File View File

Structure of the Fanconi Anemia ID complex bound to ICL DNA

Pavletich, N.P.

(2020) Nature 580: 278-282

Released	2020-03-18
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 2 Unique nucleic acid chains: 4

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6VAD \| pdb_00006vad	Download File View File

Fanconi Anemia ID complex

Pavletich, N.P.

(2020) Nature 580: 278-282

Released	2020-03-18
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Homo sapiens
Macromolecule	Fanconi anemia group D2 protein (protein) Fanconi anemia, complementation group I (protein)

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6VAE \| pdb_00006vae	Download File View File

Mono-ubiquitinated Fanconi Anemia ID complex bound to ICL DNA

Pavletich, N.P.

(2020) Nature 580: 278-282

Released	2020-03-18
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens
Macromolecule	Fanconi anemia group D2 protein (protein) Fanconi anemia, complementation group I (protein) Ubiquitin (protein) DNA (29-MER) (nucleic acid)

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6VAF \| pdb_00006vaf	Download File View File

Structure of mono-ubiquitinated FANCD2 bound to non-ubiquitinated FANCI and to DNA

Pavletich, N.P.

(2020) Nature 580: 278-282

Released	2020-03-18
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Homo sapiens
Macromolecule	Fanconi anemia group D2 protein (protein) Fanconi anemia, complementation group I (protein) Ubiquitin (protein) DNA (29-MER) (nucleic acid)

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7JY6 \| pdb_00007jy6	Download File View File

Analysis of a strand exchange reaction with a mini filament of 9-RecA, oligo(dT)27 primary ssDNA, non-homologous 120 bp dsDNA and ATPgammaS

Pavletich, N.P.

(2020) Nature 586: 801-806

Released	2020-11-04
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Escherichia coli
Macromolecule	Protein RecA (protein) DNA (27-MER) (nucleic acid) DNA (45-MER) (nucleic acid)
Unique Ligands	AGS, MG

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7JY7 \| pdb_00007jy7	Download File View File

Structure of a 12 base pair RecA-D loop complex

Pavletich, N.P.

(2020) Nature 586: 801-806

Released	2020-11-04
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Escherichia coli
Macromolecule	Protein RecA (protein) DNA (27-MER) (nucleic acid) DNA (48-MER) (nucleic acid)
Unique Ligands	AGS, MG

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7JY8 \| pdb_00007jy8	Download File View File

Analysis of a strand exchange reaction with a mini filament of 9-RecA, 27-mer ssDNA, partially-homologous 67 bp dsDNA and ATPgammaS

Pavletich, N.P.

(2020) Nature 586: 801-806

Released	2020-11-04
Method	ELECTRON MICROSCOPY 2.4 Å
Organisms	Escherichia coli
Macromolecule	Protein RecA (protein) DNA (27-MER) (nucleic acid) DNA (5'-D(PAPAPAPAPAPAPAPAPAPA)-3') (nucleic acid)
Unique Ligands	AGS, MG

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7JY9 \| pdb_00007jy9	Download File View File

Structure of a 9 base pair RecA-D loop complex

Pavletich, N.P.

(2020) Nature 586: 801-806

Released	2020-11-04
Method	ELECTRON MICROSCOPY 2.7 Å
Organisms	Escherichia coli
Macromolecule	Protein RecA (protein) DNA (27-MER) (nucleic acid) DNA (42-MER) (nucleic acid)
Unique Ligands	AGS, MG

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7N65 \| pdb_00007n65	Download File View File

Complex structure of HIV superinfection Fab QA013.2 and BG505.SOSIP.664

Mangala Prasad, V., Shipley, M.M., Overbaugh, J.M., Lee, K.K.

(2021) Elife 10:

Released	2021-07-28
Method	ELECTRON MICROSCOPY 4.15 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Envelope glycoprotein gp41 (protein) Fab QA013.2 Heavy Chain, variable region (protein) Fab QA013.2 Light Chain, , variable region (protein)
Unique Ligands	MAN, NAG
Unique branched monosaccharides	BMA, MAN, NAG

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8G7W \| pdb_00008g7w	Download File View File

Type I modPKS reducing region

McCullough, T.M., Smith, J.L.

(2023) Structure 31: 1109-1120.e3

Released	2023-06-07
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Micromonospora chalcea subsp. izumensis
Macromolecule	Type I PKS module 4, module 5 (protein)
Unique Ligands	GOL, NAP, SO4

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8G7X \| pdb_00008g7x	Download File View File

Human fatty acid synthase dehydratase domain

Akey, D.L., Konwerski, J.R., McCullough, T.M., Smith, J.L.

(2023) Structure 31: 1109-1120.e3

Released	2023-06-07
Method	X-RAY DIFFRACTION 1.815 Å
Organisms	Homo sapiens
Macromolecule	3-hydroxyacyl-[acyl-carrier-protein] dehydratase (protein)
Unique Ligands	ACT, DMS, SCN

1 to 21 of 21 Structures

Page 1 of 1

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

5WBH | pdb_00005wbh

5WBI | pdb_00005wbi

5WBJ | pdb_00005wbj

5WBK | pdb_00005wbk

5WBL | pdb_00005wbl

5WBU | pdb_00005wbu

5WBY | pdb_00005wby

6BCU | pdb_00006bcu

6BCX | pdb_00006bcx

6MN7 | pdb_00006mn7

6VAA | pdb_00006vaa

6VAD | pdb_00006vad

6VAE | pdb_00006vae

6VAF | pdb_00006vaf

7JY6 | pdb_00007jy6

7JY7 | pdb_00007jy7

7JY8 | pdb_00007jy8

7JY9 | pdb_00007jy9

7N65 | pdb_00007n65

8G7W | pdb_00008g7w

8G7X | pdb_00008g7x