RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Chroboczek, J."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 15 Structures.

Refinements

Structure Determination Methodology

experimental (15)

Scientific Name of Source Organism

	Human adenovirus 2 (5)
	Haloarcula marismortui (4)
	Fowl aviadenovirus 1 (2)
	Human adenovirus B3 (2)
	Homo sapiens (1)
	Human adenovirus C serotype 2 (1)
	Paraponera clavata (1)

Taxonomy

	Varidnaviria (9)
	Archaea (4)
	Eukaryota (1)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (12)
	ELECTRON MICROSCOPY (2)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (15)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (1)
	2.5 - 3.0 (4)
	3.0 - 3.5 (1)
	3.5 - 4.0 (2)
	> 4.5 (3)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (5)
	2005 - 2009 (7)
	2010 - 2014 (2)

Enzyme Classification Name

	Oxidoreductases (4)
	Hydrolases (1)

Symmetry Type

	Icosahedral (6)
	Cyclic (3)
	Dihedral (4)
	Asymmetric (2)

SCOP Classification

	Alpha and beta proteins (a+b) (5)
	Alpha and beta proteins (a/b) (4)
	All beta proteins (1)
	Peptides (1)

AllSelected

1 to 15 of 15 Structures

Page 1 of 1

Sort by

Explore in 3D

1D3A \| pdb_00001d3a	Download File View File

CRYSTAL STRUCTURE OF THE WILD TYPE HALOPHILIC MALATE DEHYDROGENASE IN THE APO FORM

Richard, S.B., Madern, D., Garcin, E., Zaccai, G.

(2000) Biochemistry 39: 992-1000

Released	2000-03-20
Method	X-RAY DIFFRACTION 2.94 Å
Organisms	Haloarcula marismortui
Macromolecule	HALOPHILIC MALATE DEHYDROGENASE (protein)
Unique Ligands	CL, NA

Explore in 3D

1G92 \| pdb_00001g92	Download File View File

SOLUTION STRUCTURE OF PONERATOXIN

Szolajska, E., Poznanski, J., Ferber, M.L., Michalik, J., Gout, E., Fender, P., Bailly, I., Dublet, B., Chroboczek, J.

(2004) Eur J Biochem 271: 2127-2136

Released	2003-11-18
Method	SOLUTION NMR
Organisms	Paraponera clavata
Macromolecule	PONERATOXIN (protein)

Explore in 3D

1O6Z \| pdb_00001o6z	Download File View File

1.95 A resolution structure of (R207S,R292S) mutant of malate dehydrogenase from the halophilic archaeon Haloarcula marismortui (holo form)

Irimia, A., Ebel, C., Madern, D., Richard, S.B., Cosenza, L.W., Zaccai, G., Vellieux, F.M.D.

(2003) J Mol Biology 326: 859

Released	2003-02-06
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Haloarcula marismortui
Macromolecule	MALATE DEHYDROGENASE (protein)
Unique Ligands	CL, NAD

Explore in 3D

1QHV \| pdb_00001qhv	Download File View File

HUMAN ADENOVIRUS SEROTYPE 2 FIBRE HEAD

Van Raaij, M.J., Louis, N., Chroboczek, J., Cusack, S.

(1999) Virology 262: 333-343

Released	1999-09-29
Method	X-RAY DIFFRACTION 1.51 Å
Organisms	Human adenovirus 2
Macromolecule	PROTEIN (ADENOVIRUS FIBRE) (protein)
Unique Ligands	SO4

Explore in 3D

1TFF \| pdb_00001tff	Download File View File

Structure of Otubain-2

Nanao, M.H., Tcherniuk, S.O., Chroboczek, J., Dideberg, O., Dessen, A., Balakirev, M.Y.

(2004) EMBO Rep 5: 783-788

Released	2004-08-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin thiolesterase protein OTUB2 (protein)

Explore in 3D

1X9P \| pdb_00001x9p	Download File View File

The crystal structure of human adenovirus 2 penton base

Zubieta, C., Schoehn, G., Chroboczek, J., Cusack, S.

(2005) Mol Cell 17: 121-135

Released	2005-01-18
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Human adenovirus 2
Macromolecule	Penton protein (protein)
Unique Ligands	C15, SO4

Explore in 3D

1X9T \| pdb_00001x9t	Download File View File

The crystal structure of human adenovirus 2 penton base in complex with an ad2 N-terminal fibre peptide

Zubieta, C., Schoehn, G., Chroboczek, J., Cusack, S.

(2005) Mol Cell 17: 121-135

Released	2005-01-18
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Human adenovirus 2 Human adenovirus C serotype 2
Macromolecule	N-terminal peptide of Fiber protein (protein) Penton protein (protein)
Unique Ligands	C15

Explore in 3D

2C9F \| pdb_00002c9f	Download File View File

THE QUASI-ATOMIC MODEL OF THE ADENOVIRUS TYPE 3 PENTON DODECAHEDRON

Fuschiotti, P., Schoehn, G., Fender, P., Fabry, C.M.S., Hewat, E.A., Chroboczek, J., Ruigrok, R.W.H., Conway, J.F.

(2006) J Mol Biology 356: 510

Released	2006-03-02
Method	ELECTRON MICROSCOPY 16.5 Å
Organisms	Human adenovirus 2
Macromolecule	FIBER (protein) PENTON PROTEIN (protein)

Explore in 3D

2C9G \| pdb_00002c9g	Download File View File

THE QUASI-ATOMIC MODEL OF THE ADENOVIRUS TYPE 3 PENTON BASE DODECAHEDRON

Fuschiotti, P., Schoehn, G., Fender, P., Fabry, C.M.S., Hewat, E.A., Chroboczek, J., Ruigrok, R.W.H., Conway, J.F.

(2006) J Mol Biology 356: 510

Released	2006-01-04
Method	ELECTRON MICROSCOPY 9.3 Å
Organisms	Human adenovirus 2
Macromolecule	PENTON PROTEIN (protein)

Explore in 3D

2HLP \| pdb_00002hlp	Download File View File

CRYSTAL STRUCTURE OF THE E267R MUTANT OF A HALOPHILIC MALATE DEHYDROGENASE IN THE APO FORM

Richard, S.B., Madern, D., Garcin, E., Zaccai, G.

(2000) Biochemistry 39: 992-1000

Released	2000-02-04
Method	X-RAY DIFFRACTION 2.59 Å
Organisms	Haloarcula marismortui
Macromolecule	MALATE DEHYDROGENASE (protein)
Unique Ligands	CL, NA

Explore in 3D

2IUM \| pdb_00002ium	Download File View File

Structure of the C-terminal head domain of the avian adenovirus CELO long fibre (C2 crystal form)

Guardado-Calvo, P., Llamas-Saiz, A.L., Fox, G.C., van Raaij, M.J.

(2007) J Gen Virol 88: 2407-2416

Released	2007-06-19
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Fowl aviadenovirus 1
Macromolecule	AVIAN ADENOVIRUS CELO LONG FIBRE (protein)

Explore in 3D

2IUN \| pdb_00002iun	Download File View File

Structure of the C-terminal head domain of the avian adenovirus CELO long fibre (P21 crystal form)

Guardado-Calvo, P., Llamas-Saiz, A.L., Fox, G.C., van Raaij, M.J.

(2007) J Gen Virol 88: 2407-2416

Released	2007-06-19
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Fowl aviadenovirus 1
Macromolecule	AVIAN ADENOVIRUS CELO LONG FIBRE (protein)
Unique Ligands	CA

Explore in 3D

2X0R \| pdb_00002x0r	Download File View File

R207S, R292S Mutant of Malate Dehydrogenase from the Halophilic Archeon Haloarcula marismortui (HoloForm)

Irimia, A., Ebel, C., Vellieux, F.M.D., Richard, S.B., Cosenza, L.W., Zaccai, G., Madern, D.

(2003) J Mol Biology 326: 859-873

Released	2009-12-29
Method	X-RAY DIFFRACTION 2.915 Å
Organisms	Haloarcula marismortui
Macromolecule	MALATE DEHYDROGENASE (protein)
Unique Ligands	CL, NA, NAD

Explore in 3D

4AQQ \| pdb_00004aqq	Download File View File

Dodecahedron formed of penton base protein from adenovirus Ad3

Burmeister, W.P., Szolajska, E., Zochowska, M., Nerlo, B., Andreev, I., Schoehn, G., Andrieu, J.-P., Fender, P., Naskalska, A., Zubieta, C., Cusack, S., Chroboczek, J.

(2012) PLoS One 7: 46075

Released	2012-10-24
Method	X-RAY DIFFRACTION 4.75 Å
Organisms	Human adenovirus B3
Macromolecule	L2 PROTEIN III (PENTON BASE) (protein)
Unique Ligands	CA

Explore in 3D

4AR2 \| pdb_00004ar2	Download File View File

Dodecahedron formed of penton base protein from adenovirus Ad3

Burmeister, W.P., Szolajska, E., Zochowska, M., Nerlo, B., Andreev, I., Schoehn, G., Andrieu, J.-P., Fender, P., Naskalska, A., Zubieta, C., Cusack, S., Chroboczek, J.

(2012) PLoS One 7: 46075

Released	2012-10-24
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Human adenovirus B3
Macromolecule	FIBER PROTEIN (protein) L2 PROTEIN III (PENTON BASE) (protein)
Unique Ligands	CA

1 to 15 of 15 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1D3A | pdb_00001d3a

CRYSTAL STRUCTURE OF THE WILD TYPE HALOPHILIC MALATE DEHYDROGENASE IN THE APO FORM

1G92 | pdb_00001g92

SOLUTION STRUCTURE OF PONERATOXIN

1O6Z | pdb_00001o6z

1.95 A resolution structure of (R207S,R292S) mutant of malate dehydrogenase from the halophilic archaeon Haloarcula marismortui (holo form)

1QHV | pdb_00001qhv

HUMAN ADENOVIRUS SEROTYPE 2 FIBRE HEAD

1TFF | pdb_00001tff

Structure of Otubain-2

1X9P | pdb_00001x9p

The crystal structure of human adenovirus 2 penton base

1X9T | pdb_00001x9t

The crystal structure of human adenovirus 2 penton base in complex with an ad2 N-terminal fibre peptide

2C9F | pdb_00002c9f

THE QUASI-ATOMIC MODEL OF THE ADENOVIRUS TYPE 3 PENTON DODECAHEDRON

2C9G | pdb_00002c9g

THE QUASI-ATOMIC MODEL OF THE ADENOVIRUS TYPE 3 PENTON BASE DODECAHEDRON

2HLP | pdb_00002hlp

CRYSTAL STRUCTURE OF THE E267R MUTANT OF A HALOPHILIC MALATE DEHYDROGENASE IN THE APO FORM

2IUM | pdb_00002ium

Structure of the C-terminal head domain of the avian adenovirus CELO long fibre (C2 crystal form)

2IUN | pdb_00002iun

Structure of the C-terminal head domain of the avian adenovirus CELO long fibre (P21 crystal form)

2X0R | pdb_00002x0r

R207S, R292S Mutant of Malate Dehydrogenase from the Halophilic Archeon Haloarcula marismortui (HoloForm)

4AQQ | pdb_00004aqq

Dodecahedron formed of penton base protein from adenovirus Ad3

4AR2 | pdb_00004ar2

Dodecahedron formed of penton base protein from adenovirus Ad3

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1D3A | pdb_00001d3a

1G92 | pdb_00001g92

1O6Z | pdb_00001o6z

1QHV | pdb_00001qhv

1TFF | pdb_00001tff

1X9P | pdb_00001x9p

1X9T | pdb_00001x9t

2C9F | pdb_00002c9f

2C9G | pdb_00002c9g

2HLP | pdb_00002hlp

2IUM | pdb_00002ium

2IUN | pdb_00002iun

2X0R | pdb_00002x0r

4AQQ | pdb_00004aqq

4AR2 | pdb_00004ar2