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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Chen, S."

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Search Summary

This query matches 642 Structures.

Refinements

Structure Determination Methodology

experimental (642)

Scientific Name of Source Organism

	Homo sapiens (348)
	Escherichia coli (31)
	Severe acute respiratory syndrome coronavirus 2 (31)
	Mus musculus (24)
	synthetic construct (24)
	Enterovirus A71 (15)
	Rattus norvegicus (15)
	Arabidopsis thaliana (13)
	Severe acute respiratory syndrome-related coronavirus (12)
	Klebsiella pneumoniae (10)

More...

Taxonomy

	Eukaryota (416)
	Bacteria (159)
	Riboviria (92)
	other sequences (24)
	Archaea (6)
	Duplodnaviria (5)
	Monodnaviria (1)
	unclassified bacterial viruses (1)

Experimental Method

	X-RAY DIFFRACTION (488)
	ELECTRON MICROSCOPY (148)
	SOLUTION NMR (6)

Polymer Entity Type

	Protein (637)
	DNA (27)
	RNA (11)

Refinement Resolution (Å)

	1.0 - 1.5 (37)
	1.5 - 2.0 (134)
	2.0 - 2.5 (163)
	2.5 - 3.0 (129)
	3.0 - 3.5 (78)
	3.5 - 4.0 (34)
	4.0 - 4.5 (14)
	> 4.5 (47)

Release Date

	1990 - 1994 (3)
	1995 - 1999 (4)
	2000 - 2004 (22)
	2005 - 2009 (46)
	2010 - 2014 (73)
	2015 - 2019 (167)
	2020 - 2024 (315)
	2025 - 2029 (12)

Enzyme Classification Name

	Hydrolases (197)
	Transferases (100)
	Oxidoreductases (45)
	Ligases (28)
	Lyases (16)
	Isomerases (4)
	Translocases (2)

Membrane Protein Annotation

	PDBTM (68)
	mpstruc (38)
	OPM (33)
	MemProtMD (35)

Symmetry Type

	Asymmetric (355)
	Cyclic (265)
	Dihedral (26)
	Helical (3)
	Tetrahedral (2)
	Icosahedral (1)
	Octahedral (1)

SCOP Classification

	All beta proteins (75)
	Alpha and beta proteins (a/b) (56)
	Alpha and beta proteins (a+b) (67)
	Artifacts (61)
	Membrane and cell surface proteins and peptides (17)
	All alpha proteins (33)
	Multi-domain proteins (alpha and beta) (13)

AllSelected

1 to 25 of 642 Structures

Page 1 of 26

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1AHA \| pdb_00001aha	Download File View File

THE N-GLYCOSIDASE MECHANISM OF RIBOSOME-INACTIVATING PROTEINS IMPLIED BY CRYSTAL STRUCTURES OF ALPHA-MOMORCHARIN

Ren, J., Wang, Y., Dong, Y., Stuart, D.I.

(1994) Structure 2: 7-16

Released	1994-06-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Momordica charantia
Macromolecule	ALPHA-MOMORCHARIN (protein)
Unique Ligands	ADE

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1AHB \| pdb_00001ahb	Download File View File

THE N-GLYCOSIDASE MECHANISM OF RIBOSOME-INACTIVATING PROTEINS IMPLIED BY CRYSTAL STRUCTURES OF ALPHA-MOMORCHARIN

Ren, J., Wang, Y., Dong, Y., Stuart, D.I.

(1994) Structure 2: 7-16

Released	1994-06-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Momordica charantia
Macromolecule	ALPHA-MOMORCHARIN (protein)
Unique Ligands	FMP

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1AHC \| pdb_00001ahc	Download File View File

THE N-GLYCOSIDASE MECHANISM OF RIBOSOME-INACTIVATING PROTEINS IMPLIED BY CRYSTAL STRUCTURES OF ALPHA-MOMORCHARIN

Ren, J., Wang, Y., Dong, Y., Stuart, D.I.

(1994) Structure 2: 7-16

Released	1994-06-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Momordica charantia
Macromolecule	ALPHA-MOMORCHARIN (protein)

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1AO0 \| pdb_00001ao0	Download File View File

GLUTAMINE PHOSPHORIBOSYLPYROPHOSPHATE (PRPP) AMIDOTRANSFERASE FROM B. SUBTILIS COMPLEXED WITH ADP AND GMP

Tomchick, D.R., Smith, J.L.

(1997) Biochemistry 36: 10718-10726

Released	1997-11-12
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Bacillus subtilis
Macromolecule	GLUTAMINE PHOSPHORIBOSYLPYROPHOSPHATE AMIDOTRANSFERASE (protein)
Unique Ligands	5GP, ADP, MG, SF4

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1AV8 \| pdb_00001av8	Download File View File

RIBONUCLEOTIDE REDUCTASE R2 SUBUNIT FROM E. COLI

Han, S., Arvai, A., Tainer, J.A.

(1998) Biochemistry 37: 5840-5848

Released	1998-10-28
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	RIBONUCLEOTIDE REDUCTASE R2 (protein)
Unique Ligands	FEO

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1D4A \| pdb_00001d4a	Download File View File

CRYSTAL STRUCTURE OF HUMAN NAD[P]H-QUINONE OXIDOREDUCTASE AT 1.7 A RESOLUTION

Faig, M., Bianchet, M.A., Chen, S., Winski, S., Ross, D., Amzel, L.M.

(2000) Proc Natl Acad Sci U S A 97: 3177-3182

Released	1999-10-15
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	QUINONE REDUCTASE (protein)
Unique Ligands	FAD

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1DXO \| pdb_00001dxo	Download File View File

Crystal structure of human NAD[P]H-QUINONE oxidoreductase CO with 2,3,5,6,tetramethyl-P-benzoquinone (duroquinone) at 2.5 Angstrom resolution

Faig, M., Bianchet, M.A., Chen, S., Winski, S., Ross, D., Amzel, L.M.

(2000) Proc Natl Acad Sci U S A 97: 3177

Released	2000-04-23
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	QUINONE REDUCTASE (protein)
Unique Ligands	DQN, FAD

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1DXQ \| pdb_00001dxq	Download File View File

CRYSTAL STRUCTURE OF MOUSE NAD[P]H-QUINONE OXIDOREDUCTASE

Faig, M., Bianchet, M.A., Chen, S., Winski, S., Ross, D., Amzel, L.M.

(2000) Proc Natl Acad Sci U S A 97: 3177

Released	2000-04-17
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mus musculus
Macromolecule	QUINONE REDUCTASE (protein)
Unique Ligands	FAD

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1GG5 \| pdb_00001gg5	Download File View File

CRYSTAL STRUCTURE OF A COMPLEX OF HUMAN NAD[P]H-QUINONE OXIDOREDUCTASE AND A CHEMOTHERAPEUTIC DRUG (E09) AT 2.5 A RESOLUTION

Faig, M., Bianchet, M.A., Winski, S., Hargreaves, R., Moody, C.J., Hudnott, A.R., Ross, D., Amzel, L.M.

(2001) Structure 9: 659-667

Released	2001-09-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	NAD(P)H DEHYDROGENASE [QUINONE] 1 (protein)
Unique Ligands	E09, FAD

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1H66 \| pdb_00001h66	Download File View File

CRYSTAL STRUCTURE OF HUMAN NAD[P]H-QUINONE OXIDOREDUCTASE CO WITH 2,5-diaziridinyl-3-hydroxyl-6-methyl-1,4-benzoquinone

Faig, M., Bianchet, M.A., Winski, S., Ross, D., Amzel, L.M.

(2001) Structure 9: 659

Released	2001-09-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	NAD(P)H DEHYDROGENASE [QUINONE] 1 (protein)
Unique Ligands	FAD, RH1

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1H69 \| pdb_00001h69	Download File View File

CRYSTAL STRUCTURE OF HUMAN NAD[P]H-QUINONE OXIDOREDUCTASE CO WITH 2,3,5,6,TETRAMETHYL-P-BENZOQUINONE (DUROQUINONE) AT 2.5 ANGSTROM RESOLUTION

Faig, M., Bianchet, M.A., Chen, S., Winski, S., Ross, D., Amzel, L.M.

(2001) Structure 9: 659

Released	2001-09-05
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Homo sapiens
Macromolecule	NAD(P)H DEHYDROGENASE [QUINONE] 1 (protein)
Unique Ligands	ARH, FAD

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1HQ7 \| pdb_00001hq7	Download File View File

CRYSTALLOGRAPHIC STUDIES OF A DODECAMER B-DNA D-(GCAAACGTTTGC)2

Chen, S., Berman, H.M.

(2009) J Mol Biology 386: 1054-1065

Released	2003-07-07
Method	X-RAY DIFFRACTION 2.1 Å
Macromolecule	5'-D(GPCPAPAPAPCPGPTPTPTPGPC)-3' (nucleic acid)

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1KBO \| pdb_00001kbo	Download File View File

Complex of Human recombinant NAD(P)H:Quinone Oxide reductase type 1 with 5-methoxy-1,2-dimethyl-3-(phenoxymethyl)indole-4,7-dione (ES1340)

Faig, M., Bianchet, M.A., Amzel, L.M.

(2001) Biochemistry 40: 15135-15142

Released	2002-01-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	NAD(P)H dehydrogenase [quinone] 1 (protein)
Unique Ligands	340, FAD

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1KBQ \| pdb_00001kbq	Download File View File

Complex of Human NAD(P)H quinone Oxidoreductase with 5-methoxy-1,2-dimethyl-3-(4-nitrophenoxymethyl)indole-4,7-dione (ES936)

Faig, M., Bianchet, M.A., Amzel, L.M.

(2001) Biochemistry 40: 15135-15142

Released	2002-01-16
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	NAD(P)H dehydrogenase [quinone] 1 (protein)
Unique Ligands	936, FAD

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1N0E \| pdb_00001n0e	Download File View File

CRYSTAL STRUCTURE OF A CELL DIVISION AND CELL WALL BIOSYNTHESIS PROTEIN UPF0040 FROM MYCOPLASMA PNEUMONIAE: INDICATION OF A NOVEL FOLD WITH A POSSIBLE NEW CONSERVED SEQUENCE MOTIF

Chen, S., Jancrick, J., Yokota, H., Kim, R., Kim, S.-H., Berkeley Structural Genomics Center (BSGC)

(2004) Proteins 55: 785-791

Released	2003-10-21
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Mycoplasmoides pneumoniae
Macromolecule	Protein mraZ (protein)

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1N0F \| pdb_00001n0f	Download File View File

CRYSTAL STRUCTURE OF A CELL DIVISION AND CELL WALL BIOSYNTHESIS PROTEIN UPF0040 FROM MYCOPLASMA PNEUMONIAE: INDICATION OF A NOVEL FOLD WITH A POSSIBLE NEW CONSERVED SEQUENCE MOTIF

Chen, S., Jancrick, J., Yokota, H., Kim, R., Kim, S.-H., Berkeley Structural Genomics Center (BSGC)

(2004) Proteins 55: 785-791

Released	2003-10-21
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mycoplasmoides pneumoniae
Macromolecule	Protein mraZ (protein)

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1N0G \| pdb_00001n0g	Download File View File

Crystal Structure of A Cell Division and Cell Wall Biosynthesis Protein UPF0040 from Mycoplasma pneumoniae: Indication of A Novel Fold with A Possible New Conserved Sequence Motif

Chen, S., Jancarik, J., Yokota, H., Kim, R., Kim, S.-H., Berkeley Structural Genomics Center (BSGC)

(2004) Proteins 55: 785-791

Released	2003-10-21
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mycoplasmoides pneumoniae
Macromolecule	Protein mraZ (protein)

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1O3Q \| pdb_00001o3q	Download File View File

PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES

Chen, S., Vojtechovsky, J., Parkinson, G.N., Ebright, R.H., Berman, H.M.

(2001) J Mol Biology 314: 63-74

Released	2003-04-08
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	CATABOLITE GENE ACTIVATOR PROTEIN (protein) 5'-D(APAPAPAPAPTPGPTPGPAPT)-3' (nucleic acid) 5'-D(CPTPAPGPAPTPCPAPCPAPTPTPTPTPT)-3' (nucleic acid)
Unique Ligands	CMP

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1O3R \| pdb_00001o3r	Download File View File

PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES

Chen, S., Vojtechovsky, J., Parkinson, G.N., Ebright, R.H., Berman, H.M.

(2001) J Mol Biology 314: 63-74

Released	2003-04-08
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	CATABOLITE GENE ACTIVATOR PROTEIN (protein) 5'-D(APAPAPAPAPTPGPCPGPAPT)-3' (nucleic acid) 5'-D(CPTPAPGPAPTPCPGPCPAPTPTPTPTPT)-3' (nucleic acid)
Unique Ligands	CMP

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1O3S \| pdb_00001o3s	Download File View File

PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES

Chen, S., Ebright, R.H., Berman, H.M.

(2001) J Mol Biology 314: 75-82

Released	2003-04-08
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	CATABOLITE GENE ACTIVATOR PROTEIN (protein) 5'-D(APAPAPAPAPTPGPCPGPAPT)-3' (nucleic acid) 5'-D(CPTPAPGPAPTPCPGPCPAPTPTPTPTPT)-3' (nucleic acid)
Unique Ligands	CMP

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1O3T \| pdb_00001o3t	Download File View File

PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES

Chen, S., Vojtechovsky, J., Parkinson, G.N., Ebright, R.H., Berman, H.M.

(2001) J Mol Biology 314: 63-74

Released	2003-04-08
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	CATABOLITE GENE ACTIVATOR PROTEIN (protein) 5'-D(CPTPAPGPAPTPCPGPCPAPTPTPTPTPTPCPG)-3' (nucleic acid) 5'-D(GPCPGPAPAPAPAPAPTPGPCPGPAP*T)-3' (nucleic acid)
Unique Ligands	CMP

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1OZ9 \| pdb_00001oz9	Download File View File

Crystal structure of AQ_1354, a hypothetical protein from Aquifex aeolicus

Oganesyan, V., Busso, D., Brandsen, J., Chen, S., Jancarik, J., Kim, R., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

(2003) Acta Crystallogr D Biol Crystallogr 59: 1219-1223

Released	2003-09-23
Method	X-RAY DIFFRACTION 1.894 Å
Organisms	Aquifex aeolicus
Macromolecule	Hypothetical protein AQ_1354 (protein)

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1S3L \| pdb_00001s3l	Download File View File

Structural and Functional Characterization of a Novel Archaeal Phosphodiesterase

Chen, S., Busso, D., Yakunin, A.F., Kuznetsova, E., Proudfoot, M., Jancrick, J., Kim, R., Kim, S.-H., Berkeley Structural Genomics Center (BSGC)

(2004) J Biological Chem 279: 31854-31862

Released	2004-08-10
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	Hypothetical protein MJ0936 (protein)
Unique Ligands	PO4, UNX

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1S3M \| pdb_00001s3m	Download File View File

Structural and Functional Characterization of a Novel Archaeal Phosphodiesterase

Chen, S., Busso, D., Yakunin, A.F., Kuznetsova, E., Proudfoot, M., Jancrick, J., Kim, R., Kim, S.-H., Berkeley Structural Genomics Center (BSGC)

(2004) J Biological Chem 279: 31854-31862

Released	2004-08-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	Hypothetical protein MJ0936 (protein)
Unique Ligands	NI

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1S3N \| pdb_00001s3n	Download File View File

Structural and Functional Characterization of a Novel Archaeal Phosphodiesterase

Chen, S., Busso, D., Yakunin, A.F., Kuznetsova, E., Proudfoot, M., Jancrick, J., Kim, R., Kim, S.-H., Berkeley Structural Genomics Center (BSGC)

(2004) J Biological Chem 279: 31854-31862

Released	2004-08-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	Hypothetical protein MJ0936 (protein)
Unique Ligands	MN

1 to 25 of 642 Structures

Page 1 of 26

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AHA | pdb_00001aha

1AHB | pdb_00001ahb

1AHC | pdb_00001ahc

1AO0 | pdb_00001ao0

1AV8 | pdb_00001av8

1D4A | pdb_00001d4a

1DXO | pdb_00001dxo

1DXQ | pdb_00001dxq

1GG5 | pdb_00001gg5

1H66 | pdb_00001h66

1H69 | pdb_00001h69

1HQ7 | pdb_00001hq7

1KBO | pdb_00001kbo

1KBQ | pdb_00001kbq

1N0E | pdb_00001n0e

1N0F | pdb_00001n0f

1N0G | pdb_00001n0g

1O3Q | pdb_00001o3q

1O3R | pdb_00001o3r

1O3S | pdb_00001o3s

1O3T | pdb_00001o3t

1OZ9 | pdb_00001oz9

1S3L | pdb_00001s3l

1S3M | pdb_00001s3m

1S3N | pdb_00001s3n