RCSB PDB: Search

1ARQ \| pdb_00001arq	Download File View File

RELAXATION MATRIX REFINEMENT OF THE SOLUTION STRUCTURE OF THE ARC REPRESSOR

Bonvin, A.M.J.J., Vis, H., Burgering, M.J.M., Breg, J.N., Boelens, R., Kaptein, R.

(1994) J Mol Biology 236: 328-341

Released	1994-01-31
Method	SOLUTION NMR
Organisms	Lederbergvirus P22
Macromolecule	ARC REPRESSOR (protein)

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1ARR \| pdb_00001arr	Download File View File

RELAXATION MATRIX REFINEMENT OF THE SOLUTION STRUCTURE OF THE ARC REPRESSOR

Bonvin, A.M.J.J., Vis, H., Burgering, M.J.M., Breg, J.N., Boelens, R., Kaptein, R.

(1994) J Mol Biology 236: 328-341

Released	1994-01-31
Method	SOLUTION NMR
Organisms	Lederbergvirus P22
Macromolecule	ARC REPRESSOR (protein)

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1CCM \| pdb_00001ccm	Download File View File

DIRECT NOE REFINEMENT OF CRAMBIN FROM 2D NMR DATA USING A SLOW-COOLING ANNEALING PROTOCOL

Bonvin, A.M.J.J., Rullmann, J.A.C., Lamerichs, R.M.J.N., Boelens, R., Kaptein, R.

(1993) Proteins 15: 385-400

Released	1993-10-31
Method	SOLUTION NMR
Organisms	Crambe hispanica subsp. abyssinica
Macromolecule	CRAMBIN (protein)

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1CJG \| pdb_00001cjg	Download File View File

NMR STRUCTURE OF LAC REPRESSOR HP62-DNA COMPLEX

Spronk, C.A.E.M., Bonvin, A.M.J.J., Radha, P.K., Melacini, G., Boelens, R., Kaptein, R.

(1999) Structure 7: 1483-1492

Released	2000-01-01
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	PROTEIN (LAC REPRESSOR) (protein) DNA (5'-D(GPAPAPTPTPGPTPGPAPGPCPGPCPTPCPAPCPAPAPTPTPC)-3') (nucleic acid)

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1EFA \| pdb_00001efa	Download File View File

CRYSTAL STRUCTURE OF THE LAC REPRESSOR DIMER BOUND TO OPERATOR AND THE ANTI-INDUCER ONPF

Bell, C.E., Lewis, M.

(2000) Nat Struct Biol 7: 209-214

Released	2000-03-06
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli
Macromolecule	LAC REPRESSOR (protein) DNA (5'-D(GPAPAPTTPGPTPGPAPGPCPGPCPTPCPAPCPAPAPTP*T)-3') (nucleic acid)
Unique Ligands	NPF

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1HRA \| pdb_00001hra	Download File View File

THE SOLUTION STRUCTURE OF THE HUMAN RETINOIC ACID RECEPTOR-BETA DNA-BINDING DOMAIN

Knegtel, R.M.A., Katahira, M., Schilthuis, J.G., Bonvin, A.M.J.J., Boelens, R., Eib, D., Van Der Saag, P.T., Kaptein, R.

(1993) J Biomol NMR 3: 1-17

Released	1994-01-31
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	RETINOIC ACID RECEPTOR (protein)
Unique Ligands	ZN

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1L1M \| pdb_00001l1m	Download File View File

SOLUTION STRUCTURE OF A DIMER OF LAC REPRESSOR DNA-BINDING DOMAIN COMPLEXED TO ITS NATURAL OPERATOR O1

Kalodimos, C.G., Bonvin, A.M.J.J., Salinas, R.K., Wechselberger, R., Boelens, R., Kaptein, R.

(2002) EMBO J 21: 2866-2876

Released	2002-06-26
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	Lactose operon repressor (protein) 5'-D(APAPAPTPTPGPTPTPAPTPCPCPGPCPTPCPAPCPAPAPTPTPC)-3' (nucleic acid) 5'-D(GPAPAPTPTPGPTPGPAPGPCPGPGPAPTPAPAPCPAPAPTPTPT)-3' (nucleic acid)

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1LQC \| pdb_00001lqc	Download File View File

LAC REPRESSOR HEADPIECE (RESIDUES 1-56), NMR, 32 STRUCTURES

Slijper, M., Bonvin, A.M.J.J., Boelens, R., Kaptein, R.

(1996) J Mol Biology 259: 761-773

Released	1997-02-12
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	LAC REPRESSOR (protein)

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1MQX \| pdb_00001mqx	Download File View File

NMR Solution Structure of Type-B Lantibiotics Mersacidin in MeOH/H2O Mixture

Hsu, S.-T., Breukink, E., Bierbaum, G., Sahl, H.-G., de Kruijff, B., Kaptein, R., van Nuland, N.A., Bonvin, A.M.

(2003) J Biological Chem 278: 13110

Released	2003-03-11
Method	SOLUTION NMR
Organisms	Bacillus sp. HIL-Y85/54728
Macromolecule	LANTIBIOTIC MERSACIDIN (protein)

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1MQY \| pdb_00001mqy	Download File View File

NMR solution structure of type-B lantibiotics mersacidin in DPC micelles

Hsu, S.-T., Breukink, E., Bierbaum, G., Sahl, H.-G., de Kruijff, B., Kaptein, R., van Nuland, N.A., Bonvin, A.M.

(2003) J Biological Chem 278: 13110

Released	2003-03-11
Method	SOLUTION NMR
Organisms	Bacillus sp. HIL-Y85/54728
Macromolecule	LANTIBIOTIC MERSACIDIN (protein)

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1MQZ \| pdb_00001mqz	Download File View File

NMR solution structure of type-B lantibiotics mersacidin bound to lipid II in DPC micelles

Hsu, S.-T., Breukink, E., Bierbaum, G., Sahl, H.-G., de Kruijff, B., Kaptein, R., van Nuland, N.A., Bonvin, A.M.

(2003) J Biological Chem 278: 13110

Released	2003-03-11
Method	SOLUTION NMR
Organisms	Bacillus sp. HIL-Y85/54728
Macromolecule	LANTIBIOTIC MERSACIDIN (protein)

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1OSL \| pdb_00001osl	Download File View File

Solution structure of a dimeric lactose DNA-binding domain complexed to a nonspecific DNA sequence

Kalodimos, C.G., Bonvin, A.M.J.J., Boelens, R., Kaptein, R.

(2004) Science 305: 386-389

Released	2004-05-04
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	Lactose operon repressor (protein) 5'-D(CPGPAPTPAPAPGPAPTPAPTPCPTPTPAPTPCPG)-3' (nucleic acid)

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1RGD \| pdb_00001rgd	Download File View File

STRUCTURE REFINEMENT OF THE GLUCOCORTICOID RECEPTOR-DNA BINDING DOMAIN FROM NMR DATA BY RELAXATION MATRIX CALCULATIONS

Van Tilborg, M.A.A., Bonvin, A.M.J.J., Hard, K., Davis, A., Maler, B., Boelens, R., Yamamoto, K.R., Kaptein, R.

(1995) J Mol Biology 247: 689-700

Released	1995-02-14
Method	SOLUTION NMR
Organisms	Rattus norvegicus
Macromolecule	GLUCOCORTICOID RECEPTOR (protein)
Unique Ligands	ZN

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1WCO \| pdb_00001wco	Download File View File

The solution structure of the nisin-lipid II complex

Hsu, S.-T.D., Breukink, E., Tischenko, E., Lutters, M.A.G., de Kruijff, B., Kaptein, R., Bonvin, A.M.J.J., van Nuland, N.A.J.

(2004) Nat Struct Mol Biol 11: 963-967

Released	2005-03-07
Method	SOLUTION NMR
Organisms	Lactococcus lactis Monarthropalpus flavus
Macromolecule	ALA-FGA-LYS-DAL-DAL PEPTIDE (protein) Lantibiotic (protein)
Unique Ligands	FDF
Unique branched monosaccharides	MUB, NAG

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1Z0Q \| pdb_00001z0q	Download File View File

Aqueous Solution Structure of the Alzheimer's Disease Abeta Peptide (1-42)

Tomaselli, S., Esposito, V., Vangone, P., van Nuland, N.A., Bonvin, A.M., Guerrini, R., Tancredi, T., Temussi, P.A., Picone, D.

(2006) Chembiochem 7: 257-267

Released	2006-05-23
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Alzheimer's disease amyloid (protein)

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2BUN \| pdb_00002bun	Download File View File

Solution structure of the BLUF domain of AppA 5-125

Grinstead, J.S., Hsu, S.-T., Laan, W., Bonvin, A.M.J.J., Hellingwerf, K.J., Boelens, R., Kaptein, R.

(2006) Chembiochem 7: 187-193

Released	2005-12-07
Method	SOLUTION NMR
Organisms	Cereibacter sphaeroides 2.4.1
Macromolecule	APPA (protein)
Unique Ligands	FAD

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2ERV \| pdb_00002erv	Download File View File

Crystal structure of the outer membrane enzyme PagL

Rutten, L., Geurtsen, J., Lambert, W., Smolenaers, J.J., Bonvin, A.M., van der Ley, P., Egmond, M.R., Gros, P., Tommassen, J.

(2006) Proc Natl Acad Sci U S A 103: 7071-7076

Released	2006-04-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	hypothetical protein Paer03002360 (protein)
Unique Ligands	CA, CXE

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2FYJ \| pdb_00002fyj	Download File View File

NMR Solution structure of calcium-loaded LRP double module

Jensen, G.A., Andersen, O.M., Bonvin, A.M., Bjerrum-Bohr, I., Etzerodt, M., O'shea, C., Poulsen, F.M., Kragelund, B.B.

(2006) J Mol Biology 362: 700-716

Released	2006-10-10
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Low-density lipoprotein receptor-related protein 1 (protein)

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2FYL \| pdb_00002fyl	Download File View File

Haddock model of the complex between double module of LRP, CR56, and first domain of receptor associated protein, RAP-d1.

Jensen, G.A., Andersen, O.M., Bonvin, A.M., Bjerrum-Bohr, I., Etzerodt, M., O'shea, C., Poulsen, F.M., Kragelund, B.B.

(2006) J Mol Biology 362: 700-716

Released	2006-10-10
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Alpha-2-macroglobulin receptor-associated protein (protein) Low-density lipoprotein receptor-related protein 1 (protein)
Unique Ligands	CA

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2K35 \| pdb_00002k35	Download File View File

Hydramacin-1: Structure and antibacterial activity of a peptide from the basal metazoan Hydra

Jung, S., Dingley, A.J., Stanisak, M., Gelhaus, C., Bosch, T., Podschun, R., Leippe, M., Gr tzinger, J.

(2009) J Biological Chem 284: 1896-1905

Released	2008-11-18
Method	SOLUTION NMR
Organisms	Hydra
Macromolecule	hydramacin-1 (protein)

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2K7F \| pdb_00002k7f	Download File View File

HADDOCK calculated model of the complex between the BRCT region of RFC p140 and dsDNA

Kobayashi, M., Ab, E., Bonvin, A., Siegal, G.

(2010) J Biological Chem 285: 10087-10097

Released	2009-09-08
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Replication factor C subunit 1 (protein) 5'-D(PDCPDGPDAPDCPDCPDTPDCPDGPDAPDGPDAPDTPDCPDA)-3' (nucleic acid) 5'-D(PDCPDTPDCPDGPDAPDGPDGPDTPDCPDG)-3' (nucleic acid)

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2KEI \| pdb_00002kei	Download File View File

Refined Solution Structure of a Dimer of LAC repressor DNA-Binding domain complexed to its natural operator O1

Romanuka, J., Folkers, G., Biris, N., Tishchenko, E., Wienk, H., Kaptein, R., Boelens, R.

(2009) J Mol Biology 390: 478-489

Released	2009-05-19
Method	SOLUTION NMR
Organisms	Escherichia coli K-12
Macromolecule	Lactose operon repressor (protein) DNA (5'-D(GPAPAPTPTPGPTPGPAPGPCPGPGPAPTPAPAPCPAPAPTPTPT)-3') (nucleic acid) DNA (5'-D(PAPAPAPTPTPGPTPTPAPTPCPCPGPCPTPCPAPCPAPAPTPTPC)-3') (nucleic acid)

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2KEJ \| pdb_00002kej	Download File View File

Solution structure of a dimer of LAC repressor DNA-binding domain complexed to its natural operator O2

Romanuka, J., Folkers, G., Biris, N., Tishchenko, E., Wienk, H., Kaptein, R., Boelens, R.

(2009) J Mol Biology 390: 478-489

Released	2009-05-19
Method	SOLUTION NMR
Organisms	Escherichia coli K-12
Macromolecule	Lactose operon repressor (protein) DNA (5'-D(GPAPAPAPTPGPTPGPAPGPCPGPAPGPTPAPAPCPAPAPCPCPG)-3') (nucleic acid) DNA (5'-D(PCPGPGPTPTPGPTPTPAPCPTPCPGPCPTPCPAPCPAPTPTPTPC)-3') (nucleic acid)

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2KEK \| pdb_00002kek	Download File View File

Solution structure of a dimer of LAC repressor DNA-binding domain complexed to its natural operator O3

Romanuka, J., Folkers, G., Biris, N., Tishchenko, E., Wienk, H., Kaptein, R., Boelens, R.

(2009) J Mol Biology 390: 478-489

Released	2009-05-19
Method	SOLUTION NMR
Organisms	Escherichia coli K-12
Macromolecule	Lactose operon repressor (protein) DNA (5'-D(CPGPGPCPAPGPTPGPAPGPCPGPCPAPAPCPGPCPAPAPTPTPC)-3') (nucleic acid) DNA (5'-D(PGPAPAPTPTPGPCPGPTPTPGPCPGPCPTPCPAPCPTPGPCPCPG)-3') (nucleic acid)

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2LNY \| pdb_00002lny	Download File View File

ShB peptide structure bound to negatively charged lipid-bilayer after Molecular Dynamics refinement

Weingarth, M.

(2012) Biophys J 103: 29-37

Released	2012-08-08
Method	SOLID-STATE NMR
Organisms	synthetic construct
Macromolecule	ShB peptide (protein)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1ARQ | pdb_00001arq

1ARR | pdb_00001arr

1CCM | pdb_00001ccm

1CJG | pdb_00001cjg

1EFA | pdb_00001efa

1HRA | pdb_00001hra

1L1M | pdb_00001l1m

1LQC | pdb_00001lqc

1MQX | pdb_00001mqx

1MQY | pdb_00001mqy

1MQZ | pdb_00001mqz

1OSL | pdb_00001osl

1RGD | pdb_00001rgd

1WCO | pdb_00001wco

1Z0Q | pdb_00001z0q

2BUN | pdb_00002bun

2ERV | pdb_00002erv

2FYJ | pdb_00002fyj

2FYL | pdb_00002fyl

2K35 | pdb_00002k35

2K7F | pdb_00002k7f

2KEI | pdb_00002kei

2KEJ | pdb_00002kej

2KEK | pdb_00002kek

2LNY | pdb_00002lny