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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Benz, J."

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Search Summary

This query matches 199 Structures.

Refinements

Structure Determination Methodology

experimental (199)

Scientific Name of Source Organism

	Homo sapiens (150)
	Mus musculus (18)
	Rattus norvegicus (15)
	synthetic construct (13)
	Streptomyces avidinii (8)
	Lama glama (6)
	Pseudomonas aeruginosa PAO1 (3)
	Trypanosoma brucei rhodesiense (3)
	Gallus gallus (2)
	Paenibacillus polymyxa (2)

More...

Taxonomy

	Eukaryota (183)
	Bacteria (18)
	other sequences (13)
	Eukaryota (eukaryotes) (6)

Experimental Method

X-RAY DIFFRACTION (199)

Polymer Entity Type

Protein (199)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (33)
	1.5 - 2.0 (64)
	2.0 - 2.5 (67)
	2.5 - 3.0 (30)
	3.0 - 3.5 (3)
	3.5 - 4.0 (1)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (4)
	2005 - 2009 (21)
	2010 - 2014 (72)
	2015 - 2019 (74)
	2020 - 2024 (22)
	2025 - 2029 (5)

Enzyme Classification Name

	Hydrolases (112)
	Transferases (29)
	Oxidoreductases (4)
	Isomerases (4)
	Lyases (1)

Membrane Protein Annotation

	OPM (3)
	PDBTM (3)
	mpstruc (3)
	MemProtMD (2)

Symmetry Type

	Asymmetric (144)
	Dihedral (36)
	Cyclic (24)

SCOP Classification

	Multi-domain proteins (alpha and beta) (30)
	All beta proteins (53)
	Alpha and beta proteins (a+b) (22)
	Artifacts (18)
	All alpha proteins (18)
	Alpha and beta proteins (a/b) (18)
	Small proteins (13)

AllSelected

1 to 25 of 199 Structures

Page 1 of 8

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1CJA \| pdb_00001cja	Download File View File

ACTIN-FRAGMIN KINASE, CATALYTIC DOMAIN FROM PHYSARUM POLYCEPHALUM

Steinbacher, S., Hof, P., Eichinger, L., Schleicher, M., Gettemans, J., Vandekerckhove, J., Huber, R., Benz, J.

(1999) EMBO J 18: 2923-2929

Released	1999-06-18
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Physarum polycephalum
Macromolecule	PROTEIN (ACTIN-FRAGMIN KINASE) (protein)
Unique Ligands	AMP

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1M9I \| pdb_00001m9i	Download File View File

Crystal Structure Of Phosphorylation-Mimicking Mutant T356D Of Annexin VI

Freye-Minks, C., Kretsinger, R.H., Creutz, C.E.

(2003) Biochemistry 42: 620-630

Released	2002-08-07
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	Annexin VI (protein)
Unique Ligands	CA

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1QDE \| pdb_00001qde	Download File View File

CRYSTAL STRUCTURE OF THE ATPASE DOMAIN OF TRANSLATION INITIATION FACTOR 4A FROM SACCHAROMYCES CEREVISIAE-THE PROTOTYPE OF THE DEAD BOX PROTEIN FAMILY

Benz, J., Trachsel, H., Baumann, U.

(1999) Structure 7: 671-679

Released	2000-05-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	TRANSLATION INITIATION FACTOR 4A (protein)
Unique Ligands	SO4

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1W6J \| pdb_00001w6j	Download File View File

Structure of human OSC in complex with Ro 48-8071

Thoma, R., Schulz-Gasch, T., D'Arcy, B., Benz, J., Aebi, J., Dehmlow, H., Hennig, M., Ruf, A.

(2004) Nature 432: 118

Released	2004-10-29
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	LANOSTEROL SYNTHASE (protein)
Unique Ligands	BOG, C14, R71

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1W6K \| pdb_00001w6k	Download File View File

Structure of human OSC in complex with Lanosterol

Thoma, R., Schulz-Gasch, T., D'Arcy, B., Benz, J., Aebi, J., Dehmlow, H., Hennig, M., Ruf, A.

(2004) Nature 432: 118

Released	2004-10-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	LANOSTEROL SYNTHASE (protein)
Unique Ligands	BOG, LAN

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2BOK \| pdb_00002bok	Download File View File

Factor Xa - cation

Morgenthaler, M., Schaerer, K., Paulini, R., Obst-Sander, U., Banner, D.W., Schlatter, D., Benz, J., Stihle, M., Diederich, F.

(2005) Angew Chem Int Ed Engl 44: 4400

Released	2005-06-16
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Homo sapiens
Macromolecule	COAGULATION FACTOR X (protein)
Unique Ligands	784, NA

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2DEB \| pdb_00002deb	Download File View File

Crystal structure of rat carnitine palmitoyltransferase 2 in space group C2221

Rufer, A.C., Thoma, R., Benz, J., Stihle, M., Gsell, B., De Roo, E., Banner, D.W., Mueller, F., Chomienne, O., Hennig, M.

(2006) Structure 14: 713-723

Released	2007-02-10
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Rattus norvegicus
Macromolecule	Carnitine O-palmitoyltransferase II, mitochondrial (protein)
Unique Ligands	BOG, COA, PLM

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2FVJ \| pdb_00002fvj	Download File View File

A novel anti-adipogenic partial agonist of peroxisome proliferator-activated receptor-gamma (PPARG) recruits pparg-coactivator-1 alpha (PGC1A) but potentiates insulin signaling in vitro

Benz, J., Burgermeister, E., Flament, A., Schnoebelen, A., Stihle, M., Gsell, B., Rufer, A., Ruf, A., Kuhn, B., Maerki, H.P., Mizrahi, J., Sebokova, E., Niesor, E., Meyer, M.

(2006) Mol Endocrinol 20: 809-830

Released	2006-05-16
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor coactivator 1 (protein) Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	GOL, RO0

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2FW3 \| pdb_00002fw3	Download File View File

Crystal structure of rat carnitine palmitoyltransferase 2 in complex with antidiabetic drug ST1326

Rufer, A.C., Thoma, R., Benz, J., Stihle, M., Gsell, B., De Roo, E., Banner, D.W., Mueller, F., Chomienne, O., Hennig, M.

(2006) Structure 14: 713-723

Released	2007-02-01
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Rattus norvegicus
Macromolecule	Carnitine O-palmitoyltransferase II, mitochondrial (protein)
Unique Ligands	BUI

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2FYO \| pdb_00002fyo	Download File View File

Crystal structure of rat carnitine palmitoyltransferase 2 in space group P43212

Rufer, A.C., Thoma, R., Benz, J., Stihle, M., Gsell, B., De Roo, E., Banner, D.W., Mueller, F., Chomienne, O., Hennig, M.

(2006) Structure 14: 713-723

Released	2007-02-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Rattus norvegicus
Macromolecule	Carnitine O-palmitoyltransferase II, mitochondrial (protein)

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2GTK \| pdb_00002gtk	Download File View File

Structure-based Design of Indole Propionic Acids as Novel PPARag CO-Agonists

Kuhn, B., Hilpert, H., Benz, J., Binggeli, A., Grether, U., Humm, R., Maerki, H.-P., Meyer, M., Mohr, P.

(2006) Bioorg Med Chem Lett 16: 4016-4020

Released	2006-09-26
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Decamer from Nuclear receptor coactivator 1 (protein) Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	208

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2JJK \| pdb_00002jjk	Download File View File

FRUCTOSE-1,6-BISPHOSPHATASE(D-FRUCTOSE-1,6-BISPHOSPHATE -1- PHOSPHOHYDROLASE) (E.C.3.1.3.11) COMPLEXED WITH A DUAL BINDING AMP SITE INHIBITOR

Ruf, A., Joseph, C., Benz, J., Fol, B., Tetaz, T., Hebeisen, P.

(2008) Bioorg Med Chem Lett 18: 4708

Released	2008-07-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	FRUCTOSE-1,6-BISPHOSPHATASE 1 (protein)
Unique Ligands	R15

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2JKH \| pdb_00002jkh	Download File View File

Factor Xa - cation inhibitor complex

Salonen, L.M., Bucher, C., Banner, D.W., Benz, J., Haap, W., Mary, J.L., Schweizer, W.B., Seiler, P., Kuster, O., Diederich, F.

(2009) Angew Chem Int Ed Engl 48: 811

Released	2009-01-13
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Homo sapiens
Macromolecule	ACTIVATED FACTOR XA HEAVY CHAIN (protein) FACTOR X LIGHT CHAIN (protein)
Unique Ligands	BI7, CA, NA

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2RCU \| pdb_00002rcu	Download File View File

Crystal structure of rat carnitine palmitoyltransferase 2 in complex with r-3-(hexadecanoylamino)-4-(trimethylazaniumyl)butanoate

Rufer, A.C., Benz, J., Chomienne, O., Thoma, R., Hennig, M.

(2007) FEBS Lett 581: 3247-3252

Released	2007-10-16
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Rattus norvegicus
Macromolecule	Carnitine O-palmitoyltransferase 2 (protein)
Unique Ligands	BOG, BUJ

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2VT5 \| pdb_00002vt5	Download File View File

FRUCTOSE-1,6-BISPHOSPHATASE(D-FRUCTOSE-1,6-BISPHOSPHATE -1- PHOSPHOHYDROLASE) (E.C.3.1.3.11) COMPLEXED WITH A DUAL BINDING AMP SITE INHIBITOR

Ruf, A., Joseph, C., Benz, J., Fol, B., Tetaz, T.

(2008) Bioorg Med Chem Lett 18: 4708

Released	2008-07-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	FRUCTOSE-1,6-BISPHOSPHATASE 1 (protein)
Unique Ligands	ROK

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2WBB \| pdb_00002wbb	Download File View File

FRUCTOSE-1,6-BISPHOSPHATASE(D-FRUCTOSE-1,6-BISPHOSPHATE-1- PHOSPHOHYDROLASE) (E.C.3.1.3.11) COMPLEXED WITH AN AMP SITE INHIBITOR

Ruf, A., Joseph, C., Benz, J., Fol, B., Tetaz, T., Kitas, E., Mohr, P., Kuhn, B., Wessel, H.P., Hebeisen, P., Haap, W., Huber, W., Alvarez Sanchez, R., Paehler, A., Bernadeau, A., Gubler, M., Schott, B., Tozzo, E.

(2010) Bioorg Med Chem Lett 20: 594

Released	2009-12-22
Method	X-RAY DIFFRACTION 2.22 Å
Organisms	Homo sapiens
Macromolecule	FRUCTOSE-1,6-BISPHOSPHATASE 1 (protein)
Unique Ligands	RO3

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2WBD \| pdb_00002wbd	Download File View File

FRUCTOSE-1,6-BISPHOSPHATASE(D-FRUCTOSE-1,6-BISPHOSPHATE-1- PHOSPHOHYDROLASE) (E.C.3.1.3.11) COMPLEXED WITH AN AMP SITE INHIBITOR

(2010) Bioorg Med Chem Lett 20: 594

Released	2009-12-22
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	FRUCTOSE-1,6-BISPHOSPHATASE 1 (protein)
Unique Ligands	RO5

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2XBV \| pdb_00002xbv	Download File View File

Factor Xa in complex with a pyrrolidine-3,4-dicarboxylic acid inhibitor

Banner, D.W., Benz, J., Schlatter, D., Anselm, L., Haap, W.

(2010) Bioorg Med Chem 20: 5313

Released	2010-08-04
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Homo sapiens
Macromolecule	ACTIVATED FACTOR XA HEAVY CHAIN (protein) FACTOR X LIGHT CHAIN (protein)
Unique Ligands	CA, NA, XBV

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2XBW \| pdb_00002xbw	Download File View File

Factor Xa in complex with a pyrrolidine-3,4-dicarboxylic acid inhibitor

Banner, D.W., Benz, J., Schlatter, D., Thomi, S., Haap, W.

(2010) Bioorg Med Chem 20: 5313

Released	2010-08-04
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Homo sapiens
Macromolecule	ACTIVATED FACTOR XA HEAVY CHAIN (protein) FACTOR X LIGHT CHAIN (protein)
Unique Ligands	455, CA, NA

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2XBX \| pdb_00002xbx	Download File View File

Factor Xa in complex with a pyrrolidine-3,4-dicarboxylic acid inhibitor

Banner, D.W., Benz, J., Schlatter, D., Haap, W.

(2010) Bioorg Med Chem 20: 5313

Released	2010-08-04
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	ACTIVATED FACTOR XA HEAVY CHAIN (protein) FACTOR X LIGHT CHAIN (protein)
Unique Ligands	CA, NA, RR8

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2XBY \| pdb_00002xby	Download File View File

Factor Xa in complex with a pyrrolidine-3,4-dicarboxylic acid inhibitor

Banner, D.W., Benz, J., Schlatter, D., Thomi, S., Haap, W.

(2010) Bioorg Med Chem 20: 5313

Released	2010-08-04
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Homo sapiens
Macromolecule	ACTIVATED FACTOR XA HEAVY CHAIN (protein) FACTOR X LIGHT CHAIN (protein)
Unique Ligands	63C, CA, NA

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2XC0 \| pdb_00002xc0	Download File View File

Factor Xa in complex with a pyrrolidine-3,4-dicarboxylic acid inhibitor

Banner, D.W., Benz, J., Schlatter, D., Anselm, L., Haap, W.

(2010) Bioorg Med Chem 20: 5313

Released	2010-08-04
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	ACTIVATED FACTOR XA HEAVY CHAIN (protein) FACTOR X LIGHT CHAIN (protein)
Unique Ligands	8NC, CA, NA

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2XC4 \| pdb_00002xc4	Download File View File

Factor Xa in complex with a pyrrolidine-3,4-dicarboxylic acid inhibitor

Banner, D.W., Benz, J., Schlatter, D., Thomi, S., Haap, W.

(2010) Bioorg Med Chem 20: 5313

Released	2010-08-04
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Homo sapiens
Macromolecule	ACTIVATED FACTOR XA HEAVY CHAIN (protein) FACTOR X LIGHT CHAIN (protein)
Unique Ligands	CA, IVK, NA

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2XC5 \| pdb_00002xc5	Download File View File

Factor Xa in complex with a pyrrolidine-3,4-dicarboxylic acid inhibitor

Banner, D.W., Benz, J., Schlatter, D., Anselm, L., Haap, W.

(2010) Bioorg Med Chem 20: 5313

Released	2010-08-04
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	ACTIVATED FACTOR XA HEAVY CHAIN (protein) FACTOR X LIGHT CHAIN (protein)
Unique Ligands	CA, NA, OYJ