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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Abendroth, J."

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Search Summary

This query matches 964 Structures.

Refinements

Structure Determination Methodology

experimental (964)

Scientific Name of Source Organism

	Burkholderia pseudomallei 1710b (54)
	Burkholderia thailandensis E264 (52)
	Mycolicibacterium smegmatis MC2 155 (46)
	Homo sapiens (41)
	Brucella abortus 2308 (37)
	Mycobacteroides abscessus ATCC 19977 (34)
	Mycobacterium avium 104 (33)
	Mycobacterium tuberculosis H37Rv (33)
	Mycobacterium marinum M (28)
	Acinetobacter baumannii (24)

More...

Taxonomy

	Bacteria (796)
	Eukaryota (151)
	Riboviria (36)
	Duplodnaviria (2)
	other sequences (2)
	unclassified sequences (2)

Experimental Method

	X-RAY DIFFRACTION (958)
	ELECTRON MICROSCOPY (4)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (964)

Refinement Resolution (Å)

	1.0 - 1.5 (61)
	1.5 - 2.0 (442)
	2.0 - 2.5 (361)
	2.5 - 3.0 (89)
	3.0 - 3.5 (8)
	3.5 - 4.0 (1)

Release Date

	2000 - 2004 (6)
	2005 - 2009 (83)
	2010 - 2014 (379)
	2015 - 2019 (287)
	2020 - 2024 (208)
	2025 - 2029 (1)

Enzyme Classification Name

	Transferases (211)
	Oxidoreductases (148)
	Hydrolases (123)
	Lyases (89)
	Ligases (70)
	Isomerases (47)
	Translocases (3)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Cyclic (517)
	Asymmetric (302)
	Dihedral (226)
	Tetrahedral (1)
	Octahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (315)
	Alpha and beta proteins (a+b) (132)
	Artifacts (184)
	All beta proteins (77)
	All alpha proteins (22)
	Multi-domain proteins (alpha and beta) (30)
	Coiled coil proteins (7)
	Membrane and cell surface proteins and peptides (2)

AllSelected

1 to 25 of 964 Structures

Page 1 of 39

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1GKP \| pdb_00001gkp	Download File View File

D-Hydantoinase (Dihydropyrimidinase) from Thermus sp. in space group C2221

Abendroth, J., Niefind, K., Schomburg, D.

(2002) J Mol Biology 320: 143

Released	2002-06-27
Method	X-RAY DIFFRACTION 1.295 Å
Organisms	Thermus sp.
Macromolecule	HYDANTOINASE (protein)
Unique Ligands	EPE, SO4, ZN

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1GKQ \| pdb_00001gkq	Download File View File

D-Hydantoinase (Dihydropyrimidinase) from Thermus sp. in space group P212121

Abendroth, J., Niefind, K., Schomburg, D.

(2002) J Mol Biology 320: 143

Released	2002-06-27
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Thermus sp.
Macromolecule	HYDANTOINASE (protein)
Unique Ligands	ZN

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1GKR \| pdb_00001gkr	Download File View File

L-Hydantoinase (Dihydropyrimidinase) from Arthrobacter aurescens

Abendroth, J., Niefind, K., Schomburg, D.

(2002) Biochemistry 41: 8589-8597

Released	2002-07-25
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Paenarthrobacter aurescens
Macromolecule	NON-ATP DEPENDENT L-SELECTIVE HYDANTOINASE (protein)
Unique Ligands	ZN

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1K1D \| pdb_00001k1d	Download File View File

Crystal structure of D-hydantoinase

Cheon, Y.H., Kim, H.S., Han, K.H., Abendroth, J., Niefind, K., Schomburg, D., Wang, J., Kim, Y.

(2002) Biochemistry 41: 9410-9417

Released	2002-08-14
Method	X-RAY DIFFRACTION 3.01 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	D-hydantoinase (protein)
Unique Ligands	ZN

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1UV7 \| pdb_00001uv7	Download File View File

periplasmic domain of EpsM from Vibrio cholerae

Abendroth, J., Hol, W.G.J.

(2004) J Mol Biology 338: 585

Released	2004-04-23
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Vibrio cholerae
Macromolecule	GENERAL SECRETION PATHWAY PROTEIN M (protein)

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1W97 \| pdb_00001w97	Download File View File

cyto-EpsL: the cytoplasmic domain of EpsL, an inner membrane component of the type II secretion system of Vibrio cholerae

Abendroth, J., Bagdasarian, M., Sansdkvist, M., Hol, W.G.J.

(2004) J Mol Biology 344: 619

Released	2004-11-30
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Vibrio cholerae
Macromolecule	TYPE II SECRETION SYSTEM PROTEIN L (protein)

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1YF5 \| pdb_00001yf5	Download File View File

Cyto-Epsl: The Cytoplasmic Domain Of Epsl, An Inner Membrane Component Of The Type II Secretion System Of Vibrio Cholerae

Abendroth, J., Murphy, P., Mushtaq, A., Sandkvist, M., Bagdasarian, M., Hol, W.G.

(2005) J Mol Biology 348: 845-855

Released	2005-05-03
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Vibrio cholerae
Macromolecule	General secretion pathway protein L (protein)

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2BH1 \| pdb_00002bh1	Download File View File

X-ray structure of the general secretion pathway complex of the N- terminal domain of EpsE and the cytosolic domain of EpsL of Vibrio cholerae

Abendroth, J., Murphy, P.M., Mushtaq, A., Bagdasarian, M., Sandkvist, M., Hol, W.G.J.

(2005) J Mol Biology 348: 845

Released	2005-05-13
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Vibrio cholerae
Macromolecule	GENERAL SECRETION PATHWAY PROTEIN E, (protein) GENERAL SECRETION PATHWAY PROTEIN L (protein)
Unique Ligands	CA

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2LKY \| pdb_00002lky	Download File View File

Solution structure of MSMEG_1053, the second DUF3349 annotated protein in the genome of Mycobacterium smegmatis, Seattle Structural Genomics Center for Infectious Disease target MysmA.17112.b

Buchko, G.W., Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2020) Protein Sci 29: 670-685

Released	2011-11-16
Method	SOLUTION NMR
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	Uncharacterized protein (protein)

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2M0N \| pdb_00002m0n	Download File View File

Solution structure of a DUF3349 annotated protein from Mycobacterium abscessus, MAB_3403c. Seattle Structural Genomics Center for Infectious Disease target MyabA.17112.a.A2

Buchko, G.W., Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2020) Protein Sci 29: 670-685

Released	2012-11-21
Method	SOLUTION NMR
Organisms	Mycobacteroides abscessus ATCC 19977
Macromolecule	Putative uncharacterized protein (protein)

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2QV8 \| pdb_00002qv8	Download File View File

Structure of the minor pseudopilin EpsH from the Type 2 Secretion System of Vibrio cholerae

Yanez, M.E., Korotkov, K.V., Abendroth, J., Hol, W.G.J.

(2008) J Mol Biology 377: 91-103

Released	2008-02-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Vibrio cholerae
Macromolecule	General secretion pathway protein H (protein)

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2RET \| pdb_00002ret	Download File View File

The crystal structure of a binary complex of two pseudopilins: EpsI and EpsJ from the Type 2 Secretion System of Vibrio vulnificus

Yanez, M.E., Korotkov, K.V., Abendroth, J., Hol, W.G.J.

(2008) J Mol Biology 375: 471-486

Released	2008-02-05
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Vibrio vulnificus
Macromolecule	EpsJ (protein) Pseudopilin EpsI (protein)
Unique Ligands	CL, NA

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2VMA \| pdb_00002vma	Download File View File

The three-dimensional structure of the cytoplasmic domains of EpsF from the Type 2 Secretion System of Vibrio cholerae

Abendroth, J., Korotkov, K.V., Mitchell, D.D., Kreger, A., Hol, W.G.J.

(2009) J Struct Biol 166: 303

Released	2009-02-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Vibrio cholerae
Macromolecule	GENERAL SECRETION PATHWAY PROTEIN F (protein)
Unique Ligands	CA, IOD

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2VMB \| pdb_00002vmb	Download File View File

The three-dimensional structure of the cytoplasmic domains of EpsF from the Type 2 Secretion System of Vibrio cholerae

Abendroth, J., Korotkov, K.V., Mitchell, D.D., Kreger, A., Hol, W.G.J.

(2009) J Struct Biol 166: 303

Released	2009-02-10
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Vibrio cholerae
Macromolecule	GENERAL SECRETION PATHWAY PROTEIN F (protein)
Unique Ligands	CA

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2W7V \| pdb_00002w7v	Download File View File

periplasmic domain of EpsL from Vibrio parahaemolyticus

Abendroth, J., Kreger, A.C., Abendroth, H., Sandkvist, M., Hol, W.G.J.

(2009) J Struct Biol 168: 313

Released	2010-03-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Vibrio parahaemolyticus
Macromolecule	GENERAL SECRETION PATHWAY PROTEIN L (protein)
Unique Ligands	EDO, PO4

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3C1Q \| pdb_00003c1q	Download File View File

The three-dimensional structure of the cytoplasmic domains of EpsF from the Type 2 Secretion System of Vibrio cholerae

Abendroth, J., Mitchell, D.D., Korotkov, K.V., Kreeger, A., Hol, W.G.J.

(2009) J Struct Biol 166: 303-315

Released	2009-02-03
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Vibrio cholerae
Macromolecule	General secretion pathway protein F (protein)
Unique Ligands	CA, CL, NA, PE5

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3D63 \| pdb_00003d63	Download File View File

Crystal structure of inorganic pyrophosphatase from Burkholderia pseudomallei

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2013) PLoS One 8: e53851-e53851

Released	2008-07-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Inorganic pyrophosphatase (protein)

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3DAH \| pdb_00003dah	Download File View File

2.3 A crystal structure of ribose-phosphate pyrophosphokinase from Burkholderia pseudomallei

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2013) PLoS One 8: e53851-e53851

Released	2008-06-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Ribose-phosphate pyrophosphokinase (protein)
Unique Ligands	AMP, PO4

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3DMS \| pdb_00003dms	Download File View File

1.65A crystal structure of isocitrate dehydrogenase from Burkholderia pseudomallei

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2011) Biochemistry 50: 8103-8106

Released	2008-07-15
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Burkholderia pseudomallei
Macromolecule	Isocitrate dehydrogenase [NADP] (protein)

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3EIY \| pdb_00003eiy	Download File View File

Crystal structure of inorganic pyrophosphatase from burkholderia pseudomallei with bound pyrophosphate

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2009) PLoS Comput Biol 5: e1000530-e1000530

Released	2008-09-30
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Inorganic pyrophosphatase (protein)
Unique Ligands	K, NA, PEG, PG4, POP

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3EIZ \| pdb_00003eiz	Download File View File

Crystal structure of inorganic pyrophosphatase from burkholderia pseudomallei, H32 crystal form

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2013) PLoS One 8: e53851-e53851

Released	2008-09-30
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Inorganic pyrophosphatase (protein)

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3EJ0 \| pdb_00003ej0	Download File View File

Crystal structure of inorganic pyrophosphatase from burkholderia pseudomallei with bound N-(pyridin-3-ylmethyl) aniline, H32 crystal form

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2009) PLoS Comput Biol 5: e1000530-e1000530

Released	2008-09-30
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Inorganic pyrophosphatase (protein)
Unique Ligands	11X

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3EJ2 \| pdb_00003ej2	Download File View File

Crystal structure of inorganic pyrophosphatase from burkholderia pseudomallei with bound 5-amino-1-(4-chlorophenyl)-1h-pyrazole-4-carbonitrile, H32 crystal form

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2013) PLoS One 8: e53851-e53851

Released	2008-09-30
Method	X-RAY DIFFRACTION 2.12 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Inorganic pyrophosphatase (protein)
Unique Ligands	928

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3EK2 \| pdb_00003ek2	Download File View File

Crystal structure of eonyl-(acyl carrier protein) reductase from burkholderia pseudomallei 1719b

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2013) PLoS One 8: e53851-e53851

Released	2008-09-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Enoyl-(Acyl-carrier-protein) reductase (NADH) (protein)
Unique Ligands	CL

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3EZO \| pdb_00003ezo	Download File View File

Crystal structure of acyl-carrier-protein s-malonyltransferase from burkholderia pseudomallei 1710b

SSGCID, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2013) PLoS One 8: e53851-e53851

Released	2008-11-11
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Malonyl CoA-acyl carrier protein transacylase (protein)

1 to 25 of 964 Structures

Page 1 of 39

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1GKP | pdb_00001gkp

1GKQ | pdb_00001gkq

1GKR | pdb_00001gkr

1K1D | pdb_00001k1d

1UV7 | pdb_00001uv7

1W97 | pdb_00001w97

1YF5 | pdb_00001yf5

2BH1 | pdb_00002bh1

2LKY | pdb_00002lky

2M0N | pdb_00002m0n

2QV8 | pdb_00002qv8

2RET | pdb_00002ret

2VMA | pdb_00002vma

2VMB | pdb_00002vmb

2W7V | pdb_00002w7v

3C1Q | pdb_00003c1q

3D63 | pdb_00003d63

3DAH | pdb_00003dah

3DMS | pdb_00003dms

3EIY | pdb_00003eiy

3EIZ | pdb_00003eiz

3EJ0 | pdb_00003ej0

3EJ2 | pdb_00003ej2

3EK2 | pdb_00003ek2

3EZO | pdb_00003ezo