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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Zhou, Y."

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Search Summary

This query matches 296 Structures.

Refinements

Structure Determination Methodology

experimental (296)

Scientific Name of Source Organism

	Homo sapiens (82)
	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (31)
	Ostrinia furnacalis (29)
	Bos taurus (24)
	HIV-1 06TG.HT008 (18)
	Mus musculus (16)
	Saccharomyces cerevisiae S288C (15)
	Streptomyces lividans (11)
	Arabidopsis thaliana (9)
	Escherichia coli (7)

More...

Taxonomy

	Eukaryota (225)
	Bacteria (80)
	Riboviria (33)
	Eukaryota (eukaryotes) (5)
	other sequences (5)

Experimental Method

	X-RAY DIFFRACTION (185)
	ELECTRON MICROSCOPY (101)
	SOLUTION NMR (10)

Polymer Entity Type

	Protein (294)
	RNA (14)
	DNA (4)

Refinement Resolution (Å)

	1.0 - 1.5 (9)
	1.5 - 2.0 (66)
	2.0 - 2.5 (55)
	2.5 - 3.0 (44)
	3.0 - 3.5 (48)
	3.5 - 4.0 (40)
	4.0 - 4.5 (15)
	> 4.5 (9)

Release Date

	1995 - 1999 (3)
	2000 - 2004 (12)
	2005 - 2009 (15)
	2010 - 2014 (65)
	2015 - 2019 (63)
	2020 - 2024 (138)

Enzyme Classification Name

	Hydrolases (87)
	Transferases (33)
	Oxidoreductases (9)
	Ligases (5)
	Isomerases (4)
	Translocases (1)

Membrane Protein Annotation

	PDBTM (22)
	MemProtMD (19)
	OPM (10)
	mpstruc (8)

Symmetry Type

	Asymmetric (193)
	Cyclic (99)
	Dihedral (9)
	Helical (1)
	Icosahedral (1)

SCOP Classification

	All beta proteins (43)
	All alpha proteins (23)
	Artifacts (22)
	Alpha and beta proteins (a+b) (15)
	Alpha and beta proteins (a/b) (11)
	Membrane and cell surface proteins and peptides (12)
	Small proteins (2)

AllSelected

1 to 25 of 296 Structures

Page 1 of 12

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1A2A \| pdb_00001a2a	Download File View File

AGKISTROTOXIN, A PHOSPHOLIPASE A2-TYPE PRESYNAPTIC NEUROTOXIN FROM AGKISTRODON HALYS PALLAS

Tang, L., Zhou, Y., Lin, Z.

(1998) J Mol Biology 282: 1-11

Released	1999-01-13
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Gloydius halys
Macromolecule	PHOSPHOLIPASE A2 (protein)
Unique Ligands	CL

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1BJJ \| pdb_00001bjj	Download File View File

AGKISTRODOTOXIN, A PHOSPHOLIPASE A2-TYPE PRESYNAPTIC NEUROTOXIN FROM AGKISTRODON HALYS PALLAS

Tang, L., Zhou, Y., Lin, Z.

(1999) Acta Crystallogr D Biol Crystallogr 55: 1986-1996

Released	1999-07-29
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Gloydius halys
Macromolecule	AGKISTRODOTOXIN (protein)
Unique Ligands	CA

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1BK9 \| pdb_00001bk9	Download File View File

PHOSPHOLIPASE A2 MODIFIED BY PBPB

Zhao, H., Tang, L., Wang, X., Lin, Z., Zhou, Y.

(1998) Toxicon 36: 875-886

Released	1999-03-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Gloydius halys
Macromolecule	PHOSPHOLIPASE A2 (protein)
Unique Ligands	BU1, CA, PBP

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1C1J \| pdb_00001c1j	Download File View File

STRUCTURE OF CADMIUM-SUBSTITUTED PHOSPHOLIPASE A2 FROM AGKISTRONDON HALYS PALLAS AT 2.8 ANGSTROMS RESOLUTION

Zhang, H.-l., Zhang, Y.-q., Song, S.-y., Zhou, Y., Lin, Z.-j.

(1999) Protein Pept Lett 6: 185-193

Released	2002-07-05
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Gloydius halys
Macromolecule	BASIC PHOSPHOLIPASE A2 (protein)
Unique Ligands	BOG, CD

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1IJL \| pdb_00001ijl	Download File View File

Crystal structure of acidic phospholipase A2 from deinagkistrodon acutus

Gu, L., Zhang, H., Song, S., Zhou, Y., Lin, Z.

(2002) Acta Crystallogr D Biol Crystallogr 58: 104-110

Released	2001-12-28
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Deinagkistrodon acutus
Macromolecule	PHOSPHOLIPASE A2 (protein)
Unique Ligands	CA, ZN

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1JVM \| pdb_00001jvm	Download File View File

KCSA POTASSIUM CHANNEL WITH TBA (TETRABUTYLAMMONIUM) AND RUBIDIUM

Morais-Cabral, J.H., Zhou, Y., MacKinnon, R.

(2001) Nature 414: 37-42

Released	2001-12-05
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Streptomyces lividans
Macromolecule	Voltage-gated potassium channel (protein)
Unique Ligands	RB, TBA

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1K4C \| pdb_00001k4c	Download File View File

Potassium Channel KcsA-Fab complex in high concentration of K+

Zhou, Y., Morais-Cabral, J.H., Kaufman, A., MacKinnon, R.

(2001) Nature 414: 43-48

Released	2001-11-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus Streptomyces lividans
Macromolecule	antibody Fab fragment heavy chain (protein) antibody Fab fragment light chain (protein) potassium channel KcsA (protein)
Unique Ligands	DGA, F09, K

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1K4D \| pdb_00001k4d	Download File View File

Potassium Channel KcsA-Fab complex in low concentration of K+

Zhou, Y., Morais-Cabral, J.H., Kaufman, A., MacKinnon, R.

(2001) Nature 414: 43-48

Released	2001-11-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mus musculus Streptomyces lividans
Macromolecule	antibody Fab fragment heavy chain (protein) antibody Fab fragment light chain (protein) potassium channel KcsA (protein)
Unique Ligands	DGA, F09, K, NA

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1KGS \| pdb_00001kgs	Download File View File

Crystal Structure at 1.50 A of an OmpR/PhoB Homolog from Thermotoga maritima

Buckler, D.R., Zhou, Y., Stock, A.M.

(2002) Structure 10: 153-164

Released	2001-12-05
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Thermotoga maritima
Macromolecule	DNA BINDING RESPONSE REGULATOR D (protein)
Unique Ligands	SCN

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1M8R \| pdb_00001m8r	Download File View File

Crystal Structures of Cadmium-binding Acidic Phospholipase A2 from the Venom of Agkistrodon halys pallas at 1.9 Resolution (crystal grown at pH 7.4)

Xu, S., Gu, L., Zhou, Y., Lin, Z.

(2003) Biochem Biophys Res Commun 300: 271-277

Released	2003-02-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Gloydius halys
Macromolecule	phospholipase A2 (protein)
Unique Ligands	BU1, CD

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1M8S \| pdb_00001m8s	Download File View File

Crystal Structures of Cadmium-binding Acidic Phospholipase A2 from the Venom of Agkistrodon halys pallas at 1.9 Resolution (crystal grown at pH 5.9)

Xu, S., Gu, L., Zhou, Y., Lin, Z.

(2003) Biochem Biophys Res Commun 300: 271-277

Released	2003-02-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Gloydius halys
Macromolecule	phospholipase a2 (protein)
Unique Ligands	BU1, CD

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1R3I \| pdb_00001r3i	Download File View File

potassium channel KcsA-Fab complex in Rb+

Zhou, Y., MacKinnon, R.

(2003) J Mol Biology 333: 965-975

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus Streptomyces lividans
Macromolecule	Antibody Fab fragment heavy chain (protein) Antibody Fab fragment light chain (protein) Voltage-gated potassium channel (protein)
Unique Ligands	DGA, F09, RB

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1R3J \| pdb_00001r3j	Download File View File

potassium channel KcsA-Fab complex in high concentration of Tl+

Zhou, Y., MacKinnon, R.

(2003) J Mol Biology 333: 965-975

Released	2003-11-25
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus Streptomyces lividans
Macromolecule	Antibody Fab fragment heavy chain (protein) Antibody Fab fragment light chain (protein) Voltage-gated potassium channel (protein)
Unique Ligands	DGA, F09, TL

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1R3K \| pdb_00001r3k	Download File View File

potassium channel KcsA-Fab complex in low concentration of Tl+

Zhou, Y., MacKinnon, R.

(2003) J Mol Biology 333: 965-975

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mus musculus Streptomyces lividans
Macromolecule	Antibody Fab fragment heavy chain (protein) Antibody Fab fragment light chain (protein) Voltage-gated potassium channel (protein)
Unique Ligands	DGA, TL

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1R3L \| pdb_00001r3l	Download File View File

potassium channel KcsA-Fab complex in Cs+

Zhou, Y., MacKinnon, R.

(2003) J Mol Biology 333: 965-975

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.41 Å
Organisms	Mus musculus Streptomyces lividans
Macromolecule	Antibody Fab fragment heavy chain (protein) Antibody Fab fragment light chain (protein) Voltage-gated potassium channel (protein)
Unique Ligands	CS, DGA, F09

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2AY0 \| pdb_00002ay0	Download File View File

Structure of the Lys9Met mutant of the E. coli Proline Utilization A (PutA) DNA-binding domain.

Larson, J.D., Schuermann, J.P., Zhou, Y., Jenkins, J.L., Becker, D.F., Tanner, J.J.

(2006) Protein Sci 15: 2630-2641

Released	2006-08-15
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	Bifunctional putA protein (protein)
Unique Ligands	CL

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2DGN \| pdb_00002dgn	Download File View File

Mouse Muscle Adenylosuccinate Synthetase partially ligated complex with GTP, 2'-deoxy-IMP

Iancu, C.V., Zhou, Y., Borza, T., Fromm, H.J., Honzatko, R.B.

(2006) Biochemistry 45: 11703-11711

Released	2006-09-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus
Macromolecule	Adenylosuccinate synthetase isozyme 1 (protein)
Unique Ligands	DOI, GDP, MG

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2DWD \| pdb_00002dwd	Download File View File

crystal structure of KcsA-FAB-TBA complex in Tl+

Yohannan, S., Zhou, Y.

(2007) J Mol Biology 366: 806-814

Released	2007-02-20
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mus musculus Streptomyces lividans
Macromolecule	ANTIBODY FAB HEAVY CHAIN (protein) ANTIBODY FAB LIGHT CHAIN (protein) Voltage-gated potassium channel (protein)
Unique Ligands	F09, L2C, TBA, TL

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2DWE \| pdb_00002dwe	Download File View File

Crystal structure of KcsA-FAB-TBA complex in Rb+

Yohannan, S., Zhou, Y.

(2007) J Mol Biology 366: 806-814

Released	2007-02-20
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mus musculus Streptomyces lividans
Macromolecule	ANTIBODY FAB HEAVY CHAIN (protein) ANTIBODY FAB LIGHT CHAIN (protein) Voltage-gated potassium channel (protein)
Unique Ligands	F09, L2C, RB, TBA

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2GCQ \| pdb_00002gcq	Download File View File

Fully ligated E.Coli Adenylosuccinate Synthetase with GTP, 2'-deoxy-IMP and Hadacidin

Honzatko, R.B., Zhou, Y.

(2006) Biochemistry 45: 11703-11711

Released	2007-04-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	Adenylosuccinate Synthetase (protein)
Unique Ligands	DOI, GDP, HDA, MG

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2GIZ \| pdb_00002giz	Download File View File

Structural and functional analysis of Natrin, a member of crisp-3 family blocks a variety of ion channels

Jiang, T., Wang, F., Li, H., Yin, C., Zhou, Y., Shu, Y., Qi, Z., Lin, Z.

(2006) Biochem Biophys Res Commun 351: 443-448

Released	2006-11-28
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Naja atra
Macromolecule	Natrin-1 (protein)

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2HVJ \| pdb_00002hvj	Download File View File

Crystal structure of KcsA-Fab-TBA complex in low K+

Zhou, Y.

(2007) J Mol Biology 366: 806-814

Released	2007-02-20
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Mus musculus Streptomyces lividans
Macromolecule	Voltage-gated potassium channel (protein) antibody Fab heavy chain (protein) antibody Fab light chain (protein)
Unique Ligands	F09, K, L2C, TBA

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2HVK \| pdb_00002hvk	Download File View File

crystal structure of the KcsA-Fab-TBA complex in high K+

Zhou, Y.

(2007) J Mol Biology 366: 806-814

Released	2007-02-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus Streptomyces lividans
Macromolecule	Antibody Fab heavy chain (protein) Antibody Fab light chain (protein) Voltage-gated potassium channel (protein)
Unique Ligands	F09, K, L2C, TBA