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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Yamamoto, K.R."

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Search Summary

This query matches 20 Structures.

Refinements

Structure Determination Methodology

experimental (20)

Scientific Name of Source Organism

	Rattus norvegicus (19)
	Homo sapiens (1)

Taxonomy

Eukaryota (20)

Experimental Method

	X-RAY DIFFRACTION (19)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (20)
	DNA (18)

Refinement Resolution (Å)

	1.5 - 2.0 (10)
	2.0 - 2.5 (5)
	2.5 - 3.0 (2)
	3.0 - 3.5 (1)
	3.5 - 4.0 (1)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (2)
	2000 - 2004 (2)
	2005 - 2009 (15)

Symmetry Type

	Cyclic (18)
	Asymmetric (2)

SCOP Classification

	Small proteins (19)
	Artifacts (18)
	All alpha proteins (1)

AllSelected

1 to 20 of 20 Structures

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Explore in 3D

1BSX \| pdb_00001bsx	Download File View File

STRUCTURE AND SPECIFICITY OF NUCLEAR RECEPTOR-COACTIVATOR INTERACTIONS

Wagner, R.L., Darimont, B.D., Apriletti, J.W., Stallcup, M.R., Kushner, P.J., Baxter, J.D., Fletterick, R.J., Yamamoto, K.R.

(1998) Genes Dev 12: 3343-3356

Released	1999-08-26
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (GRIP1) (protein) PROTEIN (THYROID HORMONE RECEPTOR BETA) (protein)
Unique Ligands	T3

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1GLU \| pdb_00001glu	Download File View File

CRYSTALLOGRAPHIC ANALYSIS OF THE INTERACTION OF THE GLUCOCORTICOID RECEPTOR WITH DNA

Luisi, B.F., Xu, W.X., Otwinowski, Z., Freedman, L.P., Yamamoto, K.R., Sigler, P.B.

(1991) Nature 352: 497-505

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Rattus norvegicus
Macromolecule	PROTEIN (GLUCOCORTICOID RECEPTOR) (protein) DNA (5'-D(CPCPAPGPAPAPCPAPTPCPGPAPTPGPTPTPC PTP*G)-3') (nucleic acid)
Unique Ligands	ZN

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1R4O \| pdb_00001r4o	Download File View File

Crystallographic analysis of the interaction of the glucocorticoid receptor with DNA

Luisi, B.F., Xu, W.X., Otwinowski, Z., Freedman, L.P., Yamamoto, K.R., Sigler, P.B.

(1991) Nature 352: 497-505

Released	2003-10-21
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Rattus norvegicus
Macromolecule	Glucocorticoid receptor (protein) 5'-D(CPCPAPGPAPAPCPAPTPCPGPAPTPGPTPTPCPTP*G)-3' (nucleic acid)
Unique Ligands	ZN

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1R4R \| pdb_00001r4r	Download File View File

Crystallographic analysis of the interaction of the glucocorticoid receptor with DNA

Luisi, B.F., Xu, W.X., Otwinowski, Z., Freedman, L.P., Yamamoto, K.R., Sigler, P.B.

(1991) Nature 352: 497-505

Released	2003-10-28
Method	X-RAY DIFFRACTION 3 Å
Organisms	Rattus norvegicus
Macromolecule	Glucocorticoid receptor (protein) 5'-D(CPTPGPAPGPAPAPCPAPTPCPAPTPGPTPTPCPTPG)-3' (nucleic acid) 5'-D(TPCPAPGPAPAPCPAPTPGPAPTPGPTPTPCPTPCPA)-3' (nucleic acid)
Unique Ligands	ZN

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1RGD \| pdb_00001rgd	Download File View File

STRUCTURE REFINEMENT OF THE GLUCOCORTICOID RECEPTOR-DNA BINDING DOMAIN FROM NMR DATA BY RELAXATION MATRIX CALCULATIONS

Van Tilborg, M.A.A., Bonvin, A.M.J.J., Hard, K., Davis, A., Maler, B., Boelens, R., Yamamoto, K.R., Kaptein, R.

(1995) J Mol Biology 247: 689-700

Released	1995-02-14
Method	SOLUTION NMR
Organisms	Rattus norvegicus
Macromolecule	GLUCOCORTICOID RECEPTOR (protein)
Unique Ligands	ZN

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3FYL \| pdb_00003fyl	Download File View File

GR DNA binding domain:CGT complex

Pufall, M.A., Yamamoto, K.R., Meijsing, S.H.

(2009) Science 324: 407-410

Released	2009-04-21
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Rattus norvegicus
Macromolecule	Glucocorticoid receptor (protein) DNA (5'-D(APAPGPAPAPCPAPTPTPTPTPGPTPCPCPG)-3') (nucleic acid) DNA (5'-D(TPCPGPGPAPCPAPAPAPAPTPGPTPTPCPT)-3') (nucleic acid)
Unique Ligands	EDO, ZN

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3G6P \| pdb_00003g6p	Download File View File

GR DNA binding domain:FKBP5 complex, 18bp

Pufall, M.A., Yamamoto, K.R., Meijsing, S.H.

(2009) Science 324: 407-410

Released	2009-04-21
Method	X-RAY DIFFRACTION 1.985 Å
Organisms	Rattus norvegicus
Macromolecule	Glucocorticoid receptor (protein) DNA (5'-D(CPCPAPGPAPAPCPAPCPCPCPTPGPTPTPCPTPG)-3') (nucleic acid) DNA (5'-D(CPCPAPGPAPAPCPAPGPGPGPTPGPTPTPCPTPG)-3') (nucleic acid)
Unique Ligands	ACT, ZN

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3G6Q \| pdb_00003g6q	Download File View File

GR DNA binding domain:FKBP5 binding site complex-9

Pufall, M.A., Yamamoto, K.R., Meijsing, S.H.

(2009) Science 324: 407-410

Released	2009-04-21
Method	X-RAY DIFFRACTION 2.26 Å
Organisms	Rattus norvegicus
Macromolecule	Glucocorticoid receptor (protein) DNA (5'-D(APAPGPAPAPCPAPCPCPCPTPGPTPTPCPT)-3') (nucleic acid) DNA (5'-D(TPAPGPAPAPCPAPGPGPGPTPGPTPTPCPT)-3') (nucleic acid)
Unique Ligands	ZN

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3G6R \| pdb_00003g6r	Download File View File

GR DNA binding domain:FKBP5 complex-52, 18bp

Pufall, M.A., Yamamoto, K.R., Meijsing, S.H.

(2009) Science 324: 407-410

Released	2009-04-21
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Rattus norvegicus
Macromolecule	Glucocorticoid receptor (protein) DNA (5'-D(CPCPAPGPAPAPCPAPCPCPCPTPGPTPTPCPTPG)-3') (nucleic acid) DNA (5'-D(CPCPAPGPAPAPCPAPGPGPGPTPGPTPTPCPTPG)-3') (nucleic acid)
Unique Ligands	ZN

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3G6T \| pdb_00003g6t	Download File View File

GR gamma DNA-binding domain:FKBP5 16bp complex-34

Pufall, M.A., Yamamoto, K.R., Meijsing, S.H.

(2009) Science 324: 407-410

Released	2009-04-21
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Rattus norvegicus
Macromolecule	Glucocorticoid receptor (protein) DNA (5'-D(APAPGPAPAPCPAPGPGPGPTPGPTPTPCPT)-3') (nucleic acid) DNA (5'-D(TPAPGPAPAPCPAPCPCPCPTPGPTPTPCPT)-3') (nucleic acid)
Unique Ligands	ZN

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3G6U \| pdb_00003g6u	Download File View File

GR DNA-binding domain:FKBP5 16bp complex-49

Pufall, M.A., Yamamoto, K.R., Meijsing, S.H.

(2009) Science 324: 407-410

Released	2009-04-21
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Rattus norvegicus
Macromolecule	Glucocorticoid receptor (protein) DNA (5'-D(APAPGPAPAPCPAPCPCPCPTPGPTPTPCPT)-3') (nucleic acid) DNA (5'-D(TPAPGPAPAPCPAPGPGPGPTPGPTPTPCPT)-3') (nucleic acid)
Unique Ligands	ZN

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3G8U \| pdb_00003g8u	Download File View File

DNA binding domain:GilZ 16bp complex-5

Pufall, M.A., Yamamoto, K.R., Meijsing, S.H.

(2009) Science 324: 407-410

Released	2009-04-21
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Rattus norvegicus
Macromolecule	Glucocorticoid receptor (protein) DNA (5'-D(APAPGPAPAPCPAPTPTPGPGPGPTPTPCPC)-3') (nucleic acid) DNA (5'-D(TPGPGPAPAPCPCPCPAPAPTPGPTPTPCPT)-3') (nucleic acid)
Unique Ligands	ZN

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3G8X \| pdb_00003g8x	Download File View File

GR DNA binding domain:GilZ 16bp complex-65

Pufall, M.A., Yamamoto, K.R., Meijsing, S.H.

(2009) Science 324: 407-410

Released	2009-04-21
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Rattus norvegicus
Macromolecule	Glucocorticoid receptor (protein) DNA (5'-D(APAPGPAPAPCPAPTPTPGPGPGPTPTPCPC)-3') (nucleic acid) DNA (5'-D(TPGPGPAPAPCPCPCPAPAPTPGPTPTPCPT)-3') (nucleic acid)
Unique Ligands	EDO, ZN

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3G97 \| pdb_00003g97	Download File View File

GR DNA-binding domain:GilZ 16bp complex-9

Pufall, M.A., Yamamoto, K.R., Meijsing, S.H.

(2009) Science 324: 407-410

Released	2009-04-21
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Rattus norvegicus
Macromolecule	Glucocorticoid receptor (protein) DNA (5'-D(APAPGPAPAPCPAPTPTPGPGPGPTPTPCPC)-3') (nucleic acid) DNA (5'-D(TPGPGPAPAPCPCPCPAPAPTPGPTPTPCPT)-3') (nucleic acid)
Unique Ligands	EDO, ZN

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3G99 \| pdb_00003g99	Download File View File

GR DNA binding domain:Pal complex-9

Pufall, M.A., Yamamoto, K.R., Meijsing, S.H.

(2009) Science 324: 407-410

Released	2009-04-21
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Rattus norvegicus
Macromolecule	Glucocorticoid receptor (protein) DNA (5'-D(APAPGPAPAPCPAPTPTPTPTPGPTPTPCPT)-3') (nucleic acid) DNA (5'-D(TPAPGPAPAPCPAPAPAPAPTPGPTPTPCPT)-3') (nucleic acid)
Unique Ligands	BR, EDO, ZN

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3G9I \| pdb_00003g9i	Download File View File

GR DNA Binding domain: Pal complex-35

Pufall, M.A., Yamamoto, K.R., Meijsing, S.H.

(2009) Science 324: 407-410

Released	2009-04-21
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Rattus norvegicus
Macromolecule	Glucocorticoid receptor (protein) DNA (5'-D(APAPGPAPAPCPAPTPTPTPTPGPTPTPCPT)-3') (nucleic acid) DNA (5'-D(TPAPGPAPAPCPAPAPAPAPTPGPTPTPCPT)-3') (nucleic acid)
Unique Ligands	EDO, ZN

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3G9J \| pdb_00003g9j	Download File View File

GR DNA binding domain:Pal, 18bp complex-36

Pufall, M.A., Yamamoto, K.R., Meijsing, S.H.

(2009) Science 324: 407-410

Released	2009-04-21
Method	X-RAY DIFFRACTION 2.32 Å
Organisms	Rattus norvegicus
Macromolecule	Glucocorticoid receptor (protein) DNA (5'-D(CPCPAPGPAPAPCPAPAPAPAPTPGPTPTPCPTPG)-3') (nucleic acid) DNA (5'-D(CPCPAPGPAPAPCPAPTPTPTPTPGPTPTPCPTPG)-3') (nucleic acid)
Unique Ligands	EDO, ZN

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3G9M \| pdb_00003g9m	Download File View File

GR DNA-binding domain:Sgk 16bp complex-44

Pufall, M.A., Yamamoto, K.R., Meijsing, S.H.

(2009) Science 324: 407-410

Released	2009-04-21
Method	X-RAY DIFFRACTION 1.61 Å
Organisms	Rattus norvegicus
Macromolecule	Glucocorticoid receptor (protein) DNA (5'-D(APAPGPAPAPCPAPTPTPTPTPGPTPCPCPG)-3') (nucleic acid) DNA (5'-D(TPCPGPGPAPCPAPAPAPAPTPGPTPTPCPT)-3') (nucleic acid)
Unique Ligands	EDO, ZN

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3G9O \| pdb_00003g9o	Download File View File

GR DNA-binding domain:Sgk 16bp complex-9

Pufall, M.A., Yamamoto, K.R., Meijsing, S.H.

(2009) Science 324: 407-410

Released	2009-04-21
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Rattus norvegicus
Macromolecule	Glucocorticoid receptor (protein) DNA (5'-D(APAPGPAPAPCPAPTPTPTPTPGPTPCPCPG)-3') (nucleic acid) DNA (5'-D(TPCPGPGPAPCPAPAPAPAPTPGPTPTPCPT)-3') (nucleic acid)
Unique Ligands	ZN

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3G9P \| pdb_00003g9p	Download File View File

GR DNA binding domain:Sgk 16bp complex-7

Pufall, M.A., Yamamoto, K.R., Meijsing, S.H.

(2009) Science 324: 407-410

Released	2009-04-14
Method	X-RAY DIFFRACTION 1.652 Å
Organisms	Rattus norvegicus
Macromolecule	Glucocorticoid receptor (protein) DNA (5'-D(APAPGPAPAPCPAPTPTPTPTPGPTPCPCPG)-3') (nucleic acid) DNA (5'-D(TPCPGPGPAPCPAPAPAPAPTPGPTPTPCPT)-3') (nucleic acid)
Unique Ligands	ZN

1 to 20 of 20 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1BSX | pdb_00001bsx

STRUCTURE AND SPECIFICITY OF NUCLEAR RECEPTOR-COACTIVATOR INTERACTIONS

1GLU | pdb_00001glu

CRYSTALLOGRAPHIC ANALYSIS OF THE INTERACTION OF THE GLUCOCORTICOID RECEPTOR WITH DNA

1R4O | pdb_00001r4o

Crystallographic analysis of the interaction of the glucocorticoid receptor with DNA

1R4R | pdb_00001r4r

Crystallographic analysis of the interaction of the glucocorticoid receptor with DNA

1RGD | pdb_00001rgd

STRUCTURE REFINEMENT OF THE GLUCOCORTICOID RECEPTOR-DNA BINDING DOMAIN FROM NMR DATA BY RELAXATION MATRIX CALCULATIONS

3FYL | pdb_00003fyl

GR DNA binding domain:CGT complex

3G6P | pdb_00003g6p

GR DNA binding domain:FKBP5 complex, 18bp

3G6Q | pdb_00003g6q

GR DNA binding domain:FKBP5 binding site complex-9

3G6R | pdb_00003g6r

GR DNA binding domain:FKBP5 complex-52, 18bp

3G6T | pdb_00003g6t

GR gamma DNA-binding domain:FKBP5 16bp complex-34

3G6U | pdb_00003g6u

GR DNA-binding domain:FKBP5 16bp complex-49

3G8U | pdb_00003g8u

DNA binding domain:GilZ 16bp complex-5

3G8X | pdb_00003g8x

GR DNA binding domain:GilZ 16bp complex-65

3G97 | pdb_00003g97

GR DNA-binding domain:GilZ 16bp complex-9

3G99 | pdb_00003g99

GR DNA binding domain:Pal complex-9

3G9I | pdb_00003g9i

GR DNA Binding domain: Pal complex-35

3G9J | pdb_00003g9j

GR DNA binding domain:Pal, 18bp complex-36

3G9M | pdb_00003g9m

GR DNA-binding domain:Sgk 16bp complex-44

3G9O | pdb_00003g9o

GR DNA-binding domain:Sgk 16bp complex-9

3G9P | pdb_00003g9p

GR DNA binding domain:Sgk 16bp complex-7

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification

1BSX | pdb_00001bsx

1GLU | pdb_00001glu

1R4O | pdb_00001r4o

1R4R | pdb_00001r4r

1RGD | pdb_00001rgd

3FYL | pdb_00003fyl

3G6P | pdb_00003g6p

3G6Q | pdb_00003g6q

3G6R | pdb_00003g6r

3G6T | pdb_00003g6t

3G6U | pdb_00003g6u

3G8U | pdb_00003g8u

3G8X | pdb_00003g8x

3G97 | pdb_00003g97

3G99 | pdb_00003g99

3G9I | pdb_00003g9i

3G9J | pdb_00003g9j

3G9M | pdb_00003g9m

3G9O | pdb_00003g9o

3G9P | pdb_00003g9p