RCSB PDB: Search

1AA3 \| pdb_00001aa3	Download File View File

C-TERMINAL DOMAIN OF THE E. COLI RECA, NMR, MINIMIZED AVERAGE STRUCTURE

Aihara, H., Ito, Y., Kurumizaka, H., Terada, T., Yokoyama, S., Shibata, T., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(1997) J Mol Biology 274: 213-221

Released	1997-07-23
Method	SOLUTION NMR
Organisms	Escherichia coli K-12
Macromolecule	RECA (protein)

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1FJD \| pdb_00001fjd	Download File View File

HUMAN PARVULIN-LIKE PEPTIDYL PROLYL CIS/TRANS ISOMERASE, HPAR14

Terada, T., Shirouzu, M., Fukumori, Y., Fujimori, F., Ito, Y., Kigawa, T., Yokoyama, S., Uchida, T., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2001) J Mol Biology 305: 917-926

Released	2001-08-08
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PEPTIDYL PROLYL CIS/TRANS ISOMERASE (PPIASE) (protein)

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1IPA \| pdb_00001ipa	Download File View File

CRYSTAL STRUCTURE OF RNA 2'-O RIBOSE METHYLTRANSFERASE

Nureki, O., Shirouzu, M., Hashimoto, K., Ishitani, R., Terada, T., Tamakoshi, M., Oshima, T., Chijimatsu, M., Takio, K., Vassylyev, D.G., Shibata, T., Inoue, Y., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2002) Acta Crystallogr D Biol Crystallogr 58: 1129-1137

Released	2002-07-10
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Thermus thermophilus
Macromolecule	RNA 2'-O-RIBOSE METHYLTRANSFERASE (protein)

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1IRX \| pdb_00001irx	Download File View File

Crystal structure of class I lysyl-tRNA synthetase

Nureki, O., Terada, T., Ishitani, R., Ambrogelly, A., Ibba, M., Soll, D., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2002) Nat Struct Biol 9: 257-262

Released	2002-04-17
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Pyrococcus horikoshii
Macromolecule	lysyl-tRNA synthetase (protein)
Unique Ligands	ZN

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1IV1 \| pdb_00001iv1	Download File View File

Structure of 2C-Methyl-D-erythritol-2,4-cyclodiphosphate Synthase

Kishida, H., Wada, T., Unzai, S., Kuzuyama, T., Terada, T., Sirouzu, M., Yokoyama, S., Tame, J.R.H., Park, S.-Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2003) Acta Crystallogr D Biol Crystallogr 59: 23-31

Released	2002-09-11
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Thermus thermophilus
Macromolecule	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (protein)

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1IV2 \| pdb_00001iv2	Download File View File

Structure of 2C-Methyl-D-erythritol-2,4-cyclodiphosphate Synthase (bound form CDP)

Kishida, H., Wada, T., Unzai, S., Kuzuyama, T., Terada, T., Sirouzu, M., Yokoyama, S., Tame, J.R.H., Park, S.-Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2003) Acta Crystallogr D Biol Crystallogr 59: 23-31

Released	2002-09-11
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Thermus thermophilus
Macromolecule	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (protein)
Unique Ligands	CDP, MG

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1IV3 \| pdb_00001iv3	Download File View File

Structure of 2C-Methyl-D-erythritol-2,4-cyclodiphosphate Synthase (bound form MG atoms)

Kishida, H., Wada, T., Unzai, S., Kuzuyama, T., Terada, T., Sirouzu, M., Yokoyama, S., Tame, J.R.H., Park, S.-Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2003) Acta Crystallogr D Biol Crystallogr 59: 23-31

Released	2002-09-11
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Thermus thermophilus
Macromolecule	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (protein)
Unique Ligands	MG

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1IV4 \| pdb_00001iv4	Download File View File

Structure of 2C-Methyl-D-erythritol-2,4-cyclodiphosphate Synthase (bound form Substrate)

Kishida, H., Wada, T., Unzai, S., Kuzuyama, T., Terada, T., Sirouzu, M., Yokoyama, S., Tame, J.R.H., Park, S.-Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2003) Acta Crystallogr D Biol Crystallogr 59: 23-31

Released	2002-09-11
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Thermus thermophilus
Macromolecule	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (protein)
Unique Ligands	C5P, MG

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1J03 \| pdb_00001j03	Download File View File

Solution structure of a putative steroid-binding protein from Arabidopsis

Suzuki, S., Hatanaka, H., Kigawa, T., Terada, T., Shirouzu, M., Seki, M., Shinozaki, K., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2003-12-16
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	putative steroid binding protein (protein)

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1J1H \| pdb_00001j1h	Download File View File

Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus

Someya, T., Nameki, N., Hosoi, H., Suzuki, S., Hatanaka, H., Fujii, M., Terada, T., Shirouzu, M., Inoue, Y., Shibata, T., Kuramitsu, S., Yokoyama, S., Kawai, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2003) FEBS Lett 535: 94-100

Released	2003-02-11
Method	SOLUTION NMR
Organisms	Thermus thermophilus
Macromolecule	Small Protein B (protein)

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1J1V \| pdb_00001j1v	Download File View File

Crystal structure of DnaA domainIV complexed with DnaAbox DNA

Fujikawa, N., Kurumizaka, H., Nureki, O., Terada, T., Shirouzu, M., Katayama, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2003) Nucleic Acids Res 31: 2077-2086

Released	2003-04-22
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	Chromosomal replication initiator protein dnaA (protein) 5'-D(CPCPTPGPTPGPGPAPTPAPAPCPA)-3' (nucleic acid) 5'-D(TPGPTPTPAPTPCPCPAPCPAPGPG)-3' (nucleic acid)

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1J27 \| pdb_00001j27	Download File View File

Crystal structure of a hypothetical protein, TT1725, from Thermus thermophilus HB8 at 1.7A resolution

Seto, A., Shirouzu, M., Terada, T., Murayama, K., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2003) Proteins 53: 768-771

Released	2003-12-02
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Thermus thermophilus HB8
Macromolecule	hypothetical protein TT1725 (protein)

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1J3M \| pdb_00001j3m	Download File View File

Crystal structure of the conserved hypothetical protein TT1751 from Thermus thermophilus HB8

Kishishita, S., Terada, T., Shirouzu, M., Kuramitsu, S., Park, S.-Y., Tame, R.H., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) Proteins 57: 883-887

Released	2004-05-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermus thermophilus
Macromolecule	the conserved hypothetical protein TT1751 (protein)
Unique Ligands	SO3

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1NZ8 \| pdb_00001nz8	Download File View File

Solution Structure of the N-utilization substance G (NusG) N-terminal (NGN) domain from Thermus thermophilus

Reay, P., Yamasaki, K., Terada, T., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) Proteins 56: 40-51

Released	2004-04-06
Method	SOLUTION NMR
Organisms	Thermus thermophilus
Macromolecule	TRANSCRIPTION ANTITERMINATION PROTEIN NUSG (protein)

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1NZ9 \| pdb_00001nz9	Download File View File

Solution Structure of the N-utilization substance G (NusG) C-terminal (NGC) domain from Thermus thermophilus

Reay, P., Yamasaki, K., Terada, T., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) Proteins 56: 40-51

Released	2004-04-06
Method	SOLUTION NMR
Organisms	Thermus thermophilus
Macromolecule	TRANSCRIPTION ANTITERMINATION PROTEIN NUSG (protein)

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1RRB \| pdb_00001rrb	Download File View File

THE RAS-BINDING DOMAIN OF RAF-1 FROM RAT, NMR, 1 STRUCTURE

Terada, T., Ito, Y., Shirouzu, M., Tateno, M., Hashimoto, K., Kigawa, T., Ebisuzaki, T., Takio, K., Shibata, T., Yokoyama, S., Smith, B.O., Laue, E.D., Cooper, J.A., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(1999) J Mol Biology 286: 219-232

Released	1999-03-30
Method	SOLUTION NMR
Organisms	Rattus norvegicus
Macromolecule	RAF PROTO-ONCOGENE SERINE/THREONINE-PROTEIN KINASE (protein)

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1UAN \| pdb_00001uan	Download File View File

Crystal structure of the conserved protein TT1542 from Thermus thermophilus HB8

Handa, N., Terada, T., Tame, J.R.H., Park, S.-Y., Kinoshita, K., Ota, M., Nakamura, H., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2003) Protein Sci 12: 1621-1632

Released	2003-08-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermus thermophilus
Macromolecule	hypothetical protein TT1542 (protein)

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1UC8 \| pdb_00001uc8	Download File View File

Crystal structure of a lysine biosynthesis enzyme, Lysx, from thermus thermophilus HB8

Sakai, H., Vassylyeva, M.N., Matsuura, T., Sekine, S., Nishiyama, M., Terada, T., Shirouzu, M., Kuramitsu, S., Vassylyev, D.G., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2003) J Mol Biology 332: 729-740

Released	2003-09-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermus thermophilus
Macromolecule	lysine biosynthesis enzyme (protein)

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1UC9 \| pdb_00001uc9	Download File View File

Crystal structure of a lysine biosynthesis enzyme, Lysx, from thermus thermophilus HB8

Sakai, H., Vassylyeva, M.N., Matsuura, T., Sekine, S., Nishiyama, M., Terada, T., Shirouzu, M., Kuramitsu, S., Vassylyev, D.G., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2003) J Mol Biology 332: 729-740

Released	2003-09-23
Method	X-RAY DIFFRACTION 2.38 Å
Organisms	Thermus thermophilus
Macromolecule	lysine biosynthesis enzyme (protein)
Unique Ligands	ADP

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1UEB \| pdb_00001ueb	Download File View File

Crystal structure of translation elongation factor P from Thermus thermophilus HB8

Hanawa-Suetsugu, K., Sekine, S., Sakai, H., Hori-Takemoto, C., Terada, T., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) Proc Natl Acad Sci U S A 101: 9595-9600

Released	2004-05-25
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Thermus thermophilus
Macromolecule	elongation factor P (protein)

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1UF3 \| pdb_00001uf3	Download File View File

Crystal structure of TT1561 of thermus thermophilus HB8

Kato-Murayama, M., Shirouzu, M., Terada, T., Murayama, K., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2003-11-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Thermus thermophilus
Macromolecule	hypothetical protein TT1561 (protein)
Unique Ligands	CA

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1UFA \| pdb_00001ufa	Download File View File

Crystal structure of TT1467 from Thermus thermophilus HB8

Idaka, M., Terada, T., Murayama, K., Yamaguchi, H., Nureki, O., Ishitani, R., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2003-11-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Thermus thermophilus
Macromolecule	TT1467 protein (protein)

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1UFB \| pdb_00001ufb	Download File View File

Crystal structure of TT1696 from Thermus thermophilus HB8

Idaka, M., Murayama, K., Yamaguchi, H., Terada, T., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2003-11-28
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermus thermophilus
Macromolecule	TT1696 protein (protein)

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1UFK \| pdb_00001ufk	Download File View File

Crystal structure of TT0836

Kaminishi, T., Sakai, H., Takemoto-Hori, C., Terada, T., Nakagawa, N., Maoka, N., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2003-11-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermus thermophilus
Macromolecule	TT0836 protein (protein)

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1UFL \| pdb_00001ufl	Download File View File

Crystal Structure of TT1020 from Thermus thermophilus HB8

Wang, H., Sakai, H., Hori-Takemoto, C., Kaminishi, T., Terada, T., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) J Struct Biol 149: 99-110

Released	2003-11-30
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Nitrogen regulatory protein P-II (protein)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AA3 | pdb_00001aa3

1FJD | pdb_00001fjd

1IPA | pdb_00001ipa

1IRX | pdb_00001irx

1IV1 | pdb_00001iv1

1IV2 | pdb_00001iv2

1IV3 | pdb_00001iv3

1IV4 | pdb_00001iv4

1J03 | pdb_00001j03

1J1H | pdb_00001j1h

1J1V | pdb_00001j1v

1J27 | pdb_00001j27

1J3M | pdb_00001j3m

1NZ8 | pdb_00001nz8

1NZ9 | pdb_00001nz9

1RRB | pdb_00001rrb

1UAN | pdb_00001uan

1UC8 | pdb_00001uc8

1UC9 | pdb_00001uc9

1UEB | pdb_00001ueb

1UF3 | pdb_00001uf3

1UFA | pdb_00001ufa

1UFB | pdb_00001ufb

1UFK | pdb_00001ufk

1UFL | pdb_00001ufl