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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Song, J."

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Search Summary

This query matches 193 Structures.

Refinements

Structure Determination Methodology

experimental (193)

Scientific Name of Source Organism

	Homo sapiens (112)
	Arabidopsis thaliana (15)
	Mus musculus (15)
	Salmonella enterica subsp. enterica serovar Typhi str. CT18 (9)
	synthetic construct (8)
	unidentified (6)
	Pseudoplectania nigrella (5)
	Salmonella enterica subsp. enterica serovar Typhi (5)
	Bos taurus (4)
	Ralstonia solanacearum (4)

More...

Taxonomy

	Eukaryota (158)
	Bacteria (33)
	Riboviria (12)
	other sequences (8)
	unclassified sequences (6)
	Eukaryota (eukaryotes) (3)
	Duplodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (124)
	SOLUTION NMR (41)
	ELECTRON MICROSCOPY (28)

Polymer Entity Type

	Protein (193)
	DNA (35)
	RNA (5)

Refinement Resolution (Å)

	1.0 - 1.5 (9)
	1.5 - 2.0 (23)
	2.0 - 2.5 (36)
	2.5 - 3.0 (44)
	3.0 - 3.5 (31)
	3.5 - 4.0 (4)
	4.0 - 4.5 (3)
	> 4.5 (2)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (8)
	2005 - 2009 (19)
	2010 - 2014 (23)
	2015 - 2019 (55)
	2020 - 2024 (81)
	2025 - 2029 (5)

Enzyme Classification Name

	Transferases (60)
	Hydrolases (23)
	Oxidoreductases (11)
	Isomerases (11)
	Lyases (6)
	Ligases (2)

Membrane Protein Annotation

	PDBTM (12)
	OPM (6)
	MemProtMD (9)
	mpstruc (3)

Symmetry Type

	Asymmetric (139)
	Cyclic (53)
	Dihedral (3)

SCOP Classification

	All beta proteins (23)
	Alpha and beta proteins (a+b) (15)
	Artifacts (12)
	All alpha proteins (9)
	Small proteins (9)
	Alpha and beta proteins (a/b) (5)
	Membrane and cell surface proteins and peptides (4)
	Peptides (2)

AllSelected

1 to 25 of 193 Structures

Page 1 of 8

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1BAH \| pdb_00001bah	Download File View File

A TWO DISULFIDE DERIVATIVE OF CHARYBDOTOXIN WITH DISULFIDE 13-33 REPLACED BY TWO ALPHA-AMINOBUTYRIC ACIDS, NMR, 30 STRUCTURES

Song, J., Gilquin, B., Jamin, N., Guenneugues, M., Dauplais, M., Vita, C., Menez, A.

(1997) Biochemistry 36: 3760-3766

Released	1997-01-11
Method	SOLUTION NMR
Organisms	Leiurus quinquestriatus
Macromolecule	CHARYBDOTOXIN (protein)

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1BGK \| pdb_00001bgk	Download File View File

SEA ANEMONE TOXIN (BGK) WITH HIGH AFFINITY FOR VOLTAGE DEPENDENT POTASSIUM CHANNEL, NMR, 15 STRUCTURES

Dauplais, M., Lecoq, A., Song, J., Cotton, J., Jamin, N., Gilquin, B., Roumestand, C., Vita, C., Harvey, A., Menez, A.

(1997) J Biological Chem 272: 4302-4309

Released	1997-01-27
Method	SOLUTION NMR
Organisms	Bunodosoma granuliferum
Macromolecule	BGK (protein)

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1G10 \| pdb_00001g10	Download File View File

TOLUENE-4-MONOOXYGENASE CATALYTIC EFFECTOR PROTEIN NMR STRUCTURE

Hemmi, H., Studts, J.M., Chae, Y.K., Song, J., Markley, J.L., Fox, B.G.

(2001) Biochemistry 40: 3512-3524

Released	2001-05-09
Method	SOLUTION NMR
Organisms	Ectopseudomonas mendocina
Macromolecule	TOLUENE-4-MONOOXYGENASE CATALYTIC EFFECTOR (protein)

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1G11 \| pdb_00001g11	Download File View File

TOLUENE-4-MONOOXYGENASE CATALYTIC EFFECTOR PROTEIN NMR STRUCTURE

Hemmi, H., Studts, J.M., Chae, Y.K., Song, J., Markley, J.L., Fox, B.G.

(2001) Biochemistry 40: 3512-3524

Released	2001-05-09
Method	SOLUTION NMR
Organisms	Ectopseudomonas mendocina
Macromolecule	TOLUENE-4-MONOOXYGENASE CATALYTIC EFFECTOR (protein)

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1M8B \| pdb_00001m8b	Download File View File

Solution structure of the C State of turkey ovomucoid at pH 2.5

Song, J., Laskowski Jr., M., Qasim, M.A., Markley, J.L.

(2003) Biochemistry 42: 6380-6391

Released	2002-09-04
Method	SOLUTION NMR
Organisms	Meleagris gallopavo
Macromolecule	Ovomucoid (protein)

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1M8C \| pdb_00001m8c	Download File View File

SOLUTION STRUCTURE OF THE T State OF TURKEY OVOMUCOID AT PH 2.5

Song, J., Laskowski Jr., M., Qasim, M.A., Markley, J.L.

(2003) Biochemistry 42: 6380-6391

Released	2002-09-04
Method	SOLUTION NMR
Organisms	Meleagris gallopavo
Macromolecule	Ovomucoid (protein)

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1PW4 \| pdb_00001pw4	Download File View File

Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli

Huang, Y., Lemieux, M.J., Song, J., Auer, M., Wang, D.N.

(2003) Science 301: 616-620

Released	2003-08-05
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Escherichia coli
Macromolecule	Glycerol-3-phosphate transporter (protein)

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1T0G \| pdb_00001t0g	Download File View File

Hypothetical protein At2g24940.1 from Arabidopsis thaliana has a cytochrome b5 like fold

Song, J., Vinarov, D.A., Tyler, E.M., Shahan, M.N., Tyler, R.C., Markley, J.L., Center for Eukaryotic Structural Genomics (CESG)

(2004) J Biomol NMR 30: 215-218

Released	2004-04-13
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	cytochrome b5 domain-containing protein (protein)

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1TIZ \| pdb_00001tiz	Download File View File

Solution Structure of a Calmodulin-Like Calcium-Binding Domain from Arabidopsis thaliana

Song, J., Zhao, Q., Thao, S., Frederick, R.O., Markley, J.L., Center for Eukaryotic Structural Genomics (CESG)

(2004) J Biomol NMR 30: 451-456

Released	2004-08-10
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	calmodulin-related protein, putative (protein)

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1XOY \| pdb_00001xoy	Download File View File

Solution structure of At3g04780.1, an Arabidopsis ortholog of the C-terminal domain of human thioredoxin-like protein

Song, J., Robert, C.T., Lee, M.S., Markley, J.L., Center for Eukaryotic Structural Genomics (CESG)

(2005) Protein Sci 14: 1059-1063

Released	2004-10-12
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	hypothetical protein At3g04780.1 (protein)

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1Y4O \| pdb_00001y4o	Download File View File

Solution structure of a mouse cytoplasmic Roadblock/LC7 dynein light chain

Song, J., Tyler, R.C., Lee, M.S., Tyler, E.M., Markley, J.L., Center for Eukaryotic Structural Genomics (CESG)

(2005) J Mol Biology 354: 1043-1051

Released	2005-01-18
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Dynein light chain 2A, cytoplasmic (protein)

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1YYC \| pdb_00001yyc	Download File View File

Solution Structure of a putative late embryogenesis abundant (LEA) protein At2g46140.1

Center for Eukaryotic Structural Genomics (CESG), Song, J., Tyler, R.C., Lee, M.S., Markley, J.L.

To be published

Released	2005-04-05
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	putative late embryogenesis abundant protein (protein)

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1Z3K \| pdb_00001z3k	Download File View File

Structural Insight into the Binding Diversity between the Tyr-Phosphorylated Human EphrinBs and Nck2 SH2 Domain

Ran, X., Song, J.

(2005) J Biological Chem 280: 19205-19212

Released	2005-03-29
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Cytoplasmic protein NCK2 (protein)

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2ASQ \| pdb_00002asq	Download File View File

Solution Structure of SUMO-1 in Complex with a SUMO-binding Motif (SBM)

Song, J., Zhang, Z., Hu, W., Chen, Y.

(2005) J Biological Chem 280: 40122-40129

Released	2005-10-11
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Protein inhibitor of activated STAT2 (protein) Small ubiquitin-related modifier 1 (protein)

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2ETT \| pdb_00002ett	Download File View File

Solution Structure of Human Sorting Nexin 22 PX Domain

Song, J., Zhao, Q., Tyler, R.C., Lee, M.S., Newman, C.L., Markley, J.L., Center for Eukaryotic Structural Genomics (CESG)

(2007) Protein Sci 16: 807-814

Released	2005-11-15
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Sorting nexin-22 (protein)

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2FB7 \| pdb_00002fb7	Download File View File

NMR Solution Structure of protein from Zebra Fish Dr.13312

Tyler, R.C., Song, J., Markley, J.L., Center for Eukaryotic Structural Genomics (CESG)

To be published

Released	2005-12-27
Method	SOLUTION NMR
Organisms	Danio rerio
Macromolecule	Sm-like protein, LSm-14_N (RAP55) (protein)

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2FFT \| pdb_00002fft	Download File View File

NMR structure of Spinach Thylakoid Soluble Phosphoprotein of 9 kDa in SDS Micelles

Song, J., Carlberg, I., Lee, M.S., Markley, J.L., Center for Eukaryotic Structural Genomics (CESG)

(2006) Biochemistry 45: 15633-15643

Released	2006-01-17
Method	SOLUTION NMR
Organisms	Spinacia oleracea
Macromolecule	thylakoid soluble phosphoprotein (protein)

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2G2B \| pdb_00002g2b	Download File View File

NMR structure of the human allograft inflammatory factor 1

Song, J., Tyler, R.C., Newman, C.L., Vinarov, D., Markley, J.L., Center for Eukaryotic Structural Genomics (CESG)

To be published

Released	2006-02-28
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Allograft inflammatory factor 1 (protein)

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2GW6 \| pdb_00002gw6	Download File View File

NMR structure of the human tRNA endonuclease SEN15 subunit

Song, J., Markley, J.L., Center for Eukaryotic Structural Genomics (CESG)

(2007) J Mol Biology 366: 155-164

Released	2006-05-16
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	tRNA-splicing endonuclease subunit Sen15 (protein)

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2I85 \| pdb_00002i85	Download File View File

NMR solution structure of Human ephrinB2 ectodomain

Ran, X., Fan, J., Song, J.

To be published

Released	2007-09-04
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Ephrin-B2 (protein)

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2JMU \| pdb_00002jmu	Download File View File

NMR structure of the mouse thiamine triphosphatase

Song, J., Markley, J.L., Center for Eukaryotic Structural Genomics (CESG)

(2008) J Biological Chem 283: 10939-10948

Released	2006-12-19
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Thiamine-triphosphatase (protein)

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2JU4 \| pdb_00002ju4	Download File View File

NMR structure of the gamma subunit of cGMP phosphodiesterase

Song, J., Guo, L.W., Ruoho, A.E., Markley, J.L., Center for Eukaryotic Structural Genomics (CESG)

(2008) Proc Natl Acad Sci U S A 105: 1505-1510

Released	2007-10-16
Method	SOLUTION NMR
Organisms	Bos taurus
Macromolecule	Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma (protein)
Unique Ligands	RCY