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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Sohn, S.Y."

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Search Summary

This query matches 249 Structures.

Refinements

Structure Determination Methodology

experimental (249)

Scientific Name of Source Organism

	Homo sapiens (80)
	Human immunodeficiency virus 1 (17)
	Arabidopsis thaliana (16)
	Macaca mulatta (15)
	Severe acute respiratory syndrome coronavirus 2 (14)
	Pseudomonas aeruginosa PAO1 (12)
	Halobacterium salinarum NRC-1 (8)
	Klebsiella pneumoniae (8)
	Chloroflexus aurantiacus J-10-fl (6)
	Escherichia coli (6)

More...

Taxonomy

	Eukaryota (130)
	Riboviria (69)
	Bacteria (67)
	Archaea (8)
	Duplodnaviria (8)
	other sequences (5)
	Viruses incertae sedis (3)
	Riboviria (RNA viruses and viroids) (2)
	unclassified sequences (2)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (183)
	ELECTRON MICROSCOPY (64)
	SOLUTION NMR (2)

Polymer Entity Type

	Protein (249)
	DNA (10)
	RNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (7)
	1.5 - 2.0 (47)
	2.0 - 2.5 (64)
	2.5 - 3.0 (53)
	3.0 - 3.5 (37)
	3.5 - 4.0 (21)
	4.0 - 4.5 (14)
	> 4.5 (4)

Release Date

	2000 - 2004 (3)
	2005 - 2009 (3)
	2010 - 2014 (63)
	2015 - 2019 (58)
	2020 - 2024 (114)
	2025 - 2029 (8)

Enzyme Classification Name

	Oxidoreductases (32)
	Hydrolases (37)
	Transferases (23)
	Isomerases (5)
	Ligases (3)
	Lyases (4)
	Translocases (1)

Membrane Protein Annotation

	PDBTM (14)
	MemProtMD (12)
	mpstruc (9)
	OPM (3)

Symmetry Type

	Asymmetric (133)
	Cyclic (100)
	Dihedral (15)
	Icosahedral (10)

SCOP Classification

	All alpha proteins (12)
	All beta proteins (7)
	Alpha and beta proteins (a+b) (6)
	Membrane and cell surface proteins and peptides (8)
	Alpha and beta proteins (a/b) (3)
	Artifacts (6)
	Small proteins (5)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 249 Structures

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1C9Q \| pdb_00001c9q	Download File View File

AVERAGE NMR SOLUTION STRUCTURE OF THE BIR-2 DOMAIN OF XIAP

Meadows, R.P., Fesik, S.W.

(1999) Nature 401: 818-822

Released	2000-08-09
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	APOPTOSIS INHIBITOR IAP HOMOLOG (protein)
Unique Ligands	ZN

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1M4M \| pdb_00001m4m	Download File View File

Mouse Survivin

Muchmore, S.W., Chen, J., Jakob, C., Zakula, D., Matayoshi, E.D., Wu, W., Zhang, H., Li, F., Ng, S.C., Altieri, D.C.

(2000) Mol Cell 6: 173-182

Released	2002-09-25
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mus musculus
Macromolecule	BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 5 (protein)
Unique Ligands	ZN

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1N2D \| pdb_00001n2d	Download File View File

Ternary complex of MLC1P bound to IQ2 and IQ3 of Myo2p, a class V myosin

Terrak, M., Wu, G., Stafford, W.F., Lu, R.C., Dominguez, R.

(2005) Proc Natl Acad Sci U S A 102: 12718-12723

Released	2003-11-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	IQ2 AND IQ3 MOTIFS FROM MYO2P, A CLASS V MYOSIN (protein) Myosin Light Chain (protein)

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2F9U \| pdb_00002f9u	Download File View File

HCV NS3 protease domain with NS4a peptide and a ketoamide inhibitor with a P2 norborane

Venkatraman, S., Njoroge, F.G., Wu, W., Girijavallabhan, V., Prongay, A.J., Butkiewicz, N., Pichardo, J.

(2006) Bioorg Med Chem Lett 16: 1628-1632

Released	2006-06-06
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Hepacivirus hominis
Macromolecule	NS3 protease/helicase' (protein) polyprotein (protein)
Unique Ligands	5NH, ZN

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2NAE \| pdb_00002nae	Download File View File

Membrane-bound mouse CD28 cytoplasmic tail

Li, H., Xu, C., Pan, W.

(2017) Nat Struct Mol Biol 24: 1081-1092

Released	2016-12-21
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	T-cell-specific surface glycoprotein CD28 (protein)

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2XYY \| pdb_00002xyy	Download File View File

De Novo model of Bacteriophage P22 procapsid coat protein

Chen, D.-H., Baker, M.L., Hryc, C.F., DiMaio, F., Jakana, J., Wu, W., Dougherty, M., Haase-Pettingell, C., Schmid, M.F., Jiang, W., Baker, D., King, J.A., Chiu, W.

(2011) Proc Natl Acad Sci U S A 108: 1355

Released	2011-02-02
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Lederbergvirus P22
Macromolecule	COAT PROTEIN (protein)

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2XYZ \| pdb_00002xyz	Download File View File

De Novo model of Bacteriophage P22 virion coat protein

Chen, D.-H., Baker, M.L., Hryc, C.F., DiMaio, F., Jakana, J., Wu, W., Dougherty, M., Haase-Pettingell, C., Schmid, M.F., Jiang, W., Baker, D., King, J.A., Chiu, W.

(2011) Proc Natl Acad Sci U S A 108: 1355

Released	2011-02-02
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Lederbergvirus P22
Macromolecule	COAT PROTEIN (protein)

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3DMK \| pdb_00003dmk	Download File View File

Crystal structure of Down Syndrome Cell Adhesion Molecule (DSCAM) isoform 1.30.30, N-terminal eight Ig domains

Sawaya, M.R., Wojtowicz, W.M., Eisenberg, D., Zipursky, S.L.

(2008) Cell 134: 1007-1018

Released	2008-10-07
Method	X-RAY DIFFRACTION 4.19 Å
Organisms	Drosophila melanogaster
Macromolecule	Down Syndrome Cell Adhesion Molecule (DSCAM) isoform 1.30.30, N-terminal eight Ig domains (protein)
Unique Ligands	GOL, SO4
Unique branched monosaccharides	NAG

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3EYD \| pdb_00003eyd	Download File View File

Structure of HCV NS3-4A Protease with an Inhibitor Derived from a Boronic Acid

Venkatraman, S., Wu, W., Prongay, A.J., Girijavallabhan, V., Njoroge, F.G.

(2009) Bioorg Med Chem Lett 19: 180-183

Released	2009-02-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Hepatitis C virus genotype 1a (isolate 1) hepatitis C virus genotype 1a
Macromolecule	HCV NS3 (protein) HCV NS4a peptide (protein)
Unique Ligands	BE8, ZN

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3J40 \| pdb_00003j40	Download File View File

Validated Near-Atomic Resolution Structure of Bacteriophage Epsilon15 Derived from Cryo-EM and Modeling

Baker, M.L., Hryc, C.F., Zhang, Q., Wu, W., Jakana, J., Haase-Pettingell, C., Afonine, P.V., Adams, P.D., King, J.A., Jiang, W., Chiu, W.

(2013) Proc Natl Acad Sci U S A 110: 12301-12306

Released	2013-07-10
Method	ELECTRON MICROSCOPY 4.5 Å
Organisms	Salmonella phage epsilon15
Macromolecule	gp10 (protein) gp7 (protein)

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3J7V \| pdb_00003j7v	Download File View File

Capsid Expansion Mechanism Of Bacteriophage T7 Revealed By Multi-State Atomic Models Derived From Cryo-EM Reconstructions

Guo, F., Liu, Z., Fang, P.A., Zhang, Q., Wright, E.T., Wu, W., Zhang, C., Vago, F., Ren, Y., Jakata, J., Chiu, W., Serwer, P., Jiang, W.

(2014) Proc Natl Acad Sci U S A 111: E4606-E4614

Released	2014-10-15
Method	ELECTRON MICROSCOPY 4.6 Å
Organisms	Escherichia phage T7
Macromolecule	Major capsid protein 10A (protein)

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3J7W \| pdb_00003j7w	Download File View File

Capsid Expansion Mechanism Of Bacteriophage T7 Revealed By Multi-State Atomic Models Derived From Cryo-EM Reconstructions

Guo, F., Liu, Z., Fang, P.A., Zhang, Q., Wright, E.T., Wu, W., Zhang, C., Vago, F., Ren, Y., Jakata, J., Chiu, W., Serwer, P., Jiang, W.

(2014) Proc Natl Acad Sci U S A 111: E4606-E4614

Released	2014-10-15
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Escherichia phage T7
Macromolecule	Major capsid protein 10A (protein)

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3J7X \| pdb_00003j7x	Download File View File

Capsid Expansion Mechanism Of Bacteriophage T7 Revealed By Multi-State Atomic Models Derived From Cryo-EM Reconstructions

Guo, F., Liu, Z., Fang, P.A., Zhang, Q., Wright, E.T., Wu, W., Zhang, C., Vago, F., Ren, Y., Jakata, J., Chiu, W., Serwer, P., Jiang, W.

(2014) Proc Natl Acad Sci U S A 111: E4606-E4614

Released	2014-10-15
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Escherichia phage T7
Macromolecule	Major capsid protein 10A (protein)

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3K3N \| pdb_00003k3n	Download File View File

Crystal structure of the catalytic core domain of human PHF8

Yu, L., Wang, Y., Huang, S., Wang, J., Deng, Z., Wu, W., Gong, W., Chen, Z.

(2010) Cell Res 20: 166-173

Released	2010-01-19
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	PHD finger protein 8 (protein)
Unique Ligands	FE2

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3K3O \| pdb_00003k3o	Download File View File

Crystal structure of the catalytic core domain of human PHF8 complexed with alpha-ketoglutarate

Yu, L., Wang, Y., Huang, S., Wang, J., Deng, Z., Wu, W., Gong, W., Chen, Z.

(2010) Cell Res 20: 166-173

Released	2010-01-19
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	PHD finger protein 8 (protein)
Unique Ligands	AKG, FE2

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3KL1 \| pdb_00003kl1	Download File View File

Crystal structure of abscisic acid receptor PYL2 at 1.55 A

Zhang, X., Wang, G., Chen, Z.

(2012) Structure 20: 780-790

Released	2010-11-10
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Arabidopsis thaliana
Macromolecule	Putative uncharacterized protein At2g26040 (protein)

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3KLX \| pdb_00003klx	Download File View File

Crystal structure of native abscisic acid receptor PYL3

Zhang, X., Wang, G., Chen, Z.

(2012) Structure 20: 780-790

Released	2010-11-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Arabidopsis thaliana
Macromolecule	F3N23.20 protein (protein)
Unique Ligands	SO4

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3KNX \| pdb_00003knx	Download File View File

HCV NS3 protease domain with P1-P3 macrocyclic ketoamide inhibitor

Venkatraman, S., Velazquez, F., Wu, W., Blackman, M., Chen, K.X., Bogen, S., Nair, L., Tong, X., Chase, R., Hart, A., Agrawal, S., Pichardo, J., Prongay, A., Cheng, K.-C., Girijavallabhan, V., Piwinski, J., Shih, N.-Y., Njoroge, F.G.

(2009) J Med Chem 52: 336-346

Released	2010-10-27
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Hepatitis C virus (isolate H77) hepatitis C virus genotype 1a
Macromolecule	HCV NS3 Protease (protein) HCV NS4a peptide (protein)
Unique Ligands	BME, JZT, ZN

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3LD1 \| pdb_00003ld1	Download File View File

Crystal Structure of IBV Nsp2a

Xu, Y., Cong, L., Wei, L., Fu, J., Chen, C., Yang, A., Tang, H., Bartlam, M., Rao, Z.

To be published

Released	2011-05-25
Method	X-RAY DIFFRACTION 2.498 Å
Organisms	Avian infectious bronchitis virus (strain M41)
Macromolecule	Replicase polyprotein 1a (protein)

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3LON \| pdb_00003lon	Download File View File

HCV NS3-4a protease domain with ketoamide inhibitor narlaprevir

Prongay, A.J.

To be published

Released	2011-01-19
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	hepatitis C virus genotype 1a
Macromolecule	Genome polyprotein (protein) KK-NS4a(21-39)-KK (protein)
Unique Ligands	BME, NNA, ZN

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3MZ8 \| pdb_00003mz8	Download File View File

Crystal Structure of Zinc-Bound Natrin From Naja atra

Wang, Y.L., Hsieh, Y.C., Liu, J.S., Chen, C.J., Wu, W.G.

(2010) J Biological Chem 285: 37872-37883

Released	2010-09-29
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Naja atra
Macromolecule	Natrin-1 (protein)
Unique Ligands	ZN

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3OJI \| pdb_00003oji	Download File View File

X-ray crystal structure of the Py13 -pyrabactin complex

Zhang, X., Zhang, Q., Wang, G., Chen, Z.

(2012) Structure 20: 780-790

Released	2011-08-10
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Arabidopsis thaliana
Macromolecule	Abscisic acid receptor PYL3 (protein)
Unique Ligands	PYV, SO4

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3OQU \| pdb_00003oqu	Download File View File

Crystal structure of native abscisic acid receptor PYL9 with ABA

Zhang, X., Zhang, Q., Chen, Z.

(2013) PLoS One 8: e67477-e67477

Released	2011-09-14
Method	X-RAY DIFFRACTION 2.68 Å
Organisms	Arabidopsis thaliana
Macromolecule	Abscisic acid receptor PYL9 (protein)
Unique Ligands	A8S

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3Q9L \| pdb_00003q9l	Download File View File

The structure of the dimeric E.coli MinD-ATP complex

Wu, W., Park, K.-T., Lutkenhaus, J., Holyoak, T.

(2011) Mol Microbiol 79: 1515-1528

Released	2011-01-26
Method	X-RAY DIFFRACTION 2.343 Å
Organisms	Escherichia coli K-12
Macromolecule	Septum site-determining protein minD (protein)
Unique Ligands	ATP, MG

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3R9I \| pdb_00003r9i	Download File View File

2.6A resolution structure of MinD complexed with MinE (12-31) peptide

Lovell, S., Battaile, K.P., Park, K.-T., Wu, W., Holyoak, T., Lutkenhaus, J.

(2011) Cell 146: 396-407

Released	2011-08-17
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli K-12
Macromolecule	Cell division topological specificity factor (protein) Septum site-determining protein minD (protein)
Unique Ligands	ADP

1 to 25 of 249 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1C9Q | pdb_00001c9q

1M4M | pdb_00001m4m

1N2D | pdb_00001n2d

2F9U | pdb_00002f9u

2NAE | pdb_00002nae

2XYY | pdb_00002xyy

2XYZ | pdb_00002xyz

3DMK | pdb_00003dmk

3EYD | pdb_00003eyd

3J40 | pdb_00003j40

3J7V | pdb_00003j7v

3J7W | pdb_00003j7w

3J7X | pdb_00003j7x

3K3N | pdb_00003k3n

3K3O | pdb_00003k3o

3KL1 | pdb_00003kl1

3KLX | pdb_00003klx

3KNX | pdb_00003knx

3LD1 | pdb_00003ld1

3LON | pdb_00003lon

3MZ8 | pdb_00003mz8

3OJI | pdb_00003oji

3OQU | pdb_00003oqu

3Q9L | pdb_00003q9l

3R9I | pdb_00003r9i