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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Sohn, J."

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Search Summary

This query matches 1,182 Structures.

Refinements

Structure Determination Methodology

experimental (1,182)

Scientific Name of Source Organism

	Homo sapiens (400)
	Severe acute respiratory syndrome coronavirus 2 (88)
	Escherichia phage RB69 (76)
	Mus musculus (61)
	synthetic construct (51)
	Arabidopsis thaliana (47)
	Escherichia coli (39)
	Drosophila melanogaster (25)
	Escherichia coli K-12 (19)
	Aquifex aeolicus (18)

More...

Taxonomy

	Eukaryota (644)
	Bacteria (248)
	Riboviria (192)
	Duplodnaviria (106)
	other sequences (51)
	Archaea (33)
	unclassified sequences (6)
	Monodnaviria (3)
	Riboviria (RNA viruses and viroids) (2)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (898)
	ELECTRON MICROSCOPY (218)
	SOLUTION NMR (60)
	SOLID-STATE NMR (4)
	SOLUTION SCATTERING (4)
	ELECTRON CRYSTALLOGRAPHY (2)

Polymer Entity Type

	Protein (1,140)
	DNA (119)
	RNA (101)

Refinement Resolution (Å)

	0.5 - 1.0 (3)
	1.0 - 1.5 (46)
	1.5 - 2.0 (251)
	2.0 - 2.5 (283)
	2.5 - 3.0 (237)
	3.0 - 3.5 (173)
	3.5 - 4.0 (73)
	4.0 - 4.5 (22)
	> 4.5 (30)

Release Date

	1990 - 1994 (8)
	1995 - 1999 (13)
	2000 - 2004 (105)
	2005 - 2009 (107)
	2010 - 2014 (298)
	2015 - 2019 (238)
	2020 - 2024 (390)
	2025 - 2029 (23)

Enzyme Classification Name

	Hydrolases (369)
	Transferases (277)
	Oxidoreductases (50)
	Ligases (50)
	Lyases (33)
	Translocases (7)
	Isomerases (7)

Membrane Protein Annotation

	PDBTM (78)
	mpstruc (42)
	OPM (47)
	MemProtMD (52)

Symmetry Type

	Asymmetric (699)
	Cyclic (372)
	Dihedral (70)
	Icosahedral (30)
	Helical (2)
	Tetrahedral (1)

SCOP Classification

	All beta proteins (153)
	Alpha and beta proteins (a+b) (178)
	Alpha and beta proteins (a/b) (182)
	All alpha proteins (68)
	Artifacts (53)
	Multi-domain proteins (alpha and beta) (77)
	Membrane and cell surface proteins and peptides (7)
	Low resolution protein structures (1)
	Small proteins (14)
	Peptides (2)

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AllSelected

1 to 25 of 1,182 Structures

Page 1 of 48

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1C5L \| pdb_00001c5l	Download File View File

STRUCTURAL BASIS FOR SELECTIVITY OF A SMALL MOLECULE, S1-BINDING, SUB-MICROMOLAR INHIBITOR OF UROKINASE TYPE PLASMINOGEN ACTIVATOR

Katz, B.A., Mackman, R., Luong, C., Radika, K., Martelli, A., Sprengeler, P.A., Wang, J., Chan, H., Wong, L.

(2000) Chem Biol 7: 299-312

Released	2000-12-22
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	Hirudin (protein) thrombin (protein)
Unique Ligands	CA, NA

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1C5M \| pdb_00001c5m	Download File View File

STRUCTURAL BASIS FOR SELECTIVITY OF A SMALL MOLECULE, S1-BINDING, SUB-MICROMOLAR INHIBITOR OF UROKINASE TYPE PLASMINOGEN ACTIVATOR

Katz, B.A., Mackman, R., Luong, C., Radika, K., Martelli, A., Sprengeler, P.A., Wang, J., Chan, H., Wong, L.

(2000) Chem Biol 7: 299-312

Released	2000-12-22
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (COAGULATION FACTOR X) (protein)

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1C5N \| pdb_00001c5n	Download File View File

STRUCTURAL BASIS FOR SELECTIVITY OF A SMALL MOLECULE, S1-BINDING, SUB-MICROMOLAR INHIBITOR OF UROKINASE TYPE PLASMINOGEN ACTIVATOR

Katz, B.A., Mackman, R., Luong, C., Radika, K., Martelli, A., Sprengeler, P.A., Wang, J., Chan, H., Wong, L.

(2000) Chem Biol 7: 299-312

Released	2000-12-22
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	Hirudin (protein) Thrombin heavy chain (protein) Thrombin light chain (protein)
Unique Ligands	CA, ESI, NA

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1C5O \| pdb_00001c5o	Download File View File

STRUCTURAL BASIS FOR SELECTIVITY OF A SMALL MOLECULE, S1-BINDING, SUB-MICROMOLAR INHIBITOR OF UROKINASE TYPE PLASMINOGEN ACTIVATOR

Katz, B.A., Mackman, R., Luong, C., Radika, K., Martelli, A., Sprengeler, P.A., Wang, J., Chan, H., Wong, L.

(2000) Chem Biol 7: 299-312

Released	2000-12-22
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	Hirudin (protein) Thrombin heavy chain (protein) Thrombin light chain (protein)
Unique Ligands	BEN, NA

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1C5P \| pdb_00001c5p	Download File View File

STRUCTURAL BASIS FOR SELECTIVITY OF A SMALL MOLECULE, S1-BINDING, SUB-MICROMOLAR INHIBITOR OF UROKINASE TYPE PLASMINOGEN ACTIVATOR

Katz, B.A., Mackman, R., Luong, C., Radika, K., Martelli, A., Sprengeler, P.A., Wang, J., Chan, H., Wong, L.

(2000) Chem Biol 7: 299-312

Released	2000-12-22
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Bos taurus
Macromolecule	PROTEIN (TRYPSIN) (protein)
Unique Ligands	BEN, CA, MG, SO4

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1C5Q \| pdb_00001c5q	Download File View File

STRUCTURAL BASIS FOR SELECTIVITY OF A SMALL MOLECULE, S1-BINDING, SUB-MICROMOLAR INHIBITOR OF UROKINASE TYPE PLASMINOGEN ACTIVATOR

Katz, B.A., Mackman, R., Luong, C., Radika, K., Martelli, A., Sprengeler, P.A., Wang, J., Chan, H., Wong, L.

(2000) Chem Biol 7: 299-312

Released	2000-12-22
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Bos taurus
Macromolecule	PROTEIN (TRYPSIN) (protein)
Unique Ligands	CA, CL, ESI

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1C5R \| pdb_00001c5r	Download File View File

STRUCTURAL BASIS FOR SELECTIVITY OF A SMALL MOLECULE, S1-BINDING, SUB-MICROMOLAR INHIBITOR OF UROKINASE TYPE PLASMINOGEN ACTIVATOR

Katz, B.A., Mackman, R., Luong, C., Radika, K., Martelli, A., Sprengeler, P.A., Wang, J., Chan, H., Wong, L.

(2000) Chem Biol 7: 299-312

Released	2000-12-22
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Bos taurus
Macromolecule	PROTEIN (TRYPSIN) (protein)
Unique Ligands	CA, ESI, FLC, SO4

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1C5S \| pdb_00001c5s	Download File View File

STRUCTURAL BASIS FOR SELECTIVITY OF A SMALL MOLECULE, S1-BINDING, SUB-MICROMOLAR INHIBITOR OF UROKINASE TYPE PLASMINOGEN ACTIVATOR

Katz, B.A., Mackman, R., Luong, C., Radika, K., Martelli, A., Sprengeler, P.A., Wang, J., Chan, H., Wong, L.

(2000) Chem Biol 7: 299-312

Released	2000-12-22
Method	X-RAY DIFFRACTION 1.36 Å
Organisms	Bos taurus
Macromolecule	PROTEIN (TRYPSIN) (protein)
Unique Ligands	CA, ESX, SO4

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1C5T \| pdb_00001c5t	Download File View File

STRUCTURAL BASIS FOR SELECTIVITY OF A SMALL MOLECULE, S1-BINDING, SUB-MICROMOLAR INHIBITOR OF UROKINASE TYPE PLASMINOGEN ACTIVATOR

Katz, B.A., Mackman, R., Luong, C., Radika, K., Martelli, A., Sprengeler, P.A., Wang, J., Chan, H., Wong, L.

(2000) Chem Biol 7: 299-312

Released	2000-12-22
Method	X-RAY DIFFRACTION 1.37 Å
Organisms	Bos taurus
Macromolecule	PROTEIN (TRYPSIN) (protein)
Unique Ligands	CA, ESP

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1C5U \| pdb_00001c5u	Download File View File

STRUCTURAL BASIS FOR SELECTIVITY OF A SMALL MOLECULE, S1-BINDING, SUB-MICROMOLAR INHIBITOR OF UROKINASE TYPE PLASMINOGEN ACTIVATOR

Katz, B.A., Mackman, R., Luong, C., Radika, K., Martelli, A., Sprengeler, P.A., Wang, J., Chan, H., Wong, L.

(2000) Chem Biol 7: 299-312

Released	2000-12-22
Method	X-RAY DIFFRACTION 1.37 Å
Organisms	Bos taurus
Macromolecule	PROTEIN (TRYPSIN) (protein)
Unique Ligands	CA, ESP, MG, SO4

Explore in 3D

1C5V \| pdb_00001c5v	Download File View File

STRUCTURAL BASIS FOR SELECTIVITY OF A SMALL MOLECULE, S1-BINDING, SUB-MICROMOLAR INHIBITOR OF UROKINASE TYPE PLASMINOGEN ACTIVATOR

Katz, B.A., Mackman, R., Luong, C., Radika, K., Martelli, A., Sprengeler, P.A., Wang, J., Chan, H., Wong, L.

(2000) Chem Biol 7: 299-312

Released	2000-12-22
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Bos taurus
Macromolecule	PROTEIN (TRYPSIN) (protein)
Unique Ligands	CA, MG

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1C5W \| pdb_00001c5w	Download File View File

STRUCTURAL BASIS FOR SELECTIVITY OF A SMALL MOLECULE, S1-BINDING, SUB-MICROMOLAR INHIBITOR OF UROKINASE TYPE PLASMINOGEN ACTIVATOR

Katz, B.A., Mackman, R., Luong, C., Radika, K., Martelli, A., Sprengeler, P.A., Wang, J., Chan, H., Wong, L.

(2000) Chem Biol 7: 299-312

Released	2000-12-22
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (UROKINASE-TYPE PLASMINOGEN ACTIVATOR) (protein)
Unique Ligands	ESI, FLC

Explore in 3D

1C5X \| pdb_00001c5x	Download File View File

STRUCTURAL BASIS FOR SELECTIVITY OF A SMALL MOLECULE, S1-BINDING, SUB-MICROMOLAR INHIBITOR OF UROKINASE TYPE PLASMINOGEN ACTIVATOR

Katz, B.A., Mackman, R., Luong, C., Radika, K., Martelli, A., Sprengeler, P.A., Wang, J., Chan, H., Wong, L.

(2000) Chem Biol 7: 299-312

Released	2000-12-22
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (UROKINASE-TYPE PLASMINOGEN ACTIVATOR) (protein)
Unique Ligands	ESI, FLC

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1C5Y \| pdb_00001c5y	Download File View File

STRUCTURAL BASIS FOR SELECTIVITY OF A SMALL MOLECULE, S1-BINDING, SUB-MICROMOLAR INHIBITOR OF UROKINASE TYPE PLASMINOGEN ACTIVATOR

Katz, B.A., Mackman, R., Luong, C., Radika, K., Martelli, A., Sprengeler, P.A., Wang, J., Chan, H., Wong, L.

(2000) Chem Biol 7: 299-312

Released	2000-12-22
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (UROKINASE-TYPE PLASMINOGEN ACTIVATOR) (protein)
Unique Ligands	ESP, FLC

Explore in 3D

1C5Z \| pdb_00001c5z	Download File View File

STRUCTURAL BASIS FOR SELECTIVITY OF A SMALL MOLECULE, S1-BINDING, SUB-MICROMOLAR INHIBITOR OF UROKINASE TYPE PLASMINOGEN ACTIVATOR

Katz, B.A., Mackman, R., Luong, C., Radika, K., Martelli, A., Sprengeler, P.A., Wang, J., Chan, H., Wong, L.

(2000) Chem Biol 7: 299-312

Released	2000-12-22
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (UROKINASE-TYPE PLASMINOGEN ACTIVATOR) (protein)
Unique Ligands	BEN, FLC

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1CCP \| pdb_00001ccp	Download File View File

X-RAY STRUCTURES OF RECOMBINANT YEAST CYTOCHROME C PEROXIDASE AND THREE HEME-CLEFT MUTANTS PREPARED BY SITE-DIRECTED MUTAGENESIS

Wang, J., Mauro, J.M., Edwards, S.L., Oatley, S.J., Fishel, L.A., Ashford, V.A., Xuong, N.-H., Kraut, J.

(1990) Biochemistry 29: 7160-7173

Released	1991-07-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	YEAST CYTOCHROME C PEROXIDASE (protein)
Unique Ligands	HEM

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1EFG \| pdb_00001efg	Download File View File

THE CRYSTAL STRUCTURE OF ELONGATION FACTOR G COMPLEXED WITH GDP, AT 2.7 ANGSTROMS RESOLUTION

Czworkowski, J., Wang, J., Steitz, T.A., Moore, P.B.

(1994) EMBO J 13: 3661-3668

Released	1995-02-14
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Thermus thermophilus
Macromolecule	ELONGATION FACTOR G (protein)
Unique Ligands	GDP

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1EQ1 \| pdb_00001eq1	Download File View File

NMR STRUCTURE OF AN EXCHANGEABLE APOLIPOPROTEIN-MANDUCA SEXTA APOLIPOPHORIN-III

Wang, J., Sykes, B.D., Ryan, R.O.

(2002) Proc Natl Acad Sci U S A 99: 1188-1193

Released	2002-02-13
Method	SOLUTION NMR
Organisms	Manduca sexta
Macromolecule	APOLIPOPHORIN-III (protein)

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1FFY \| pdb_00001ffy	Download File View File

INSIGHTS INTO EDITING FROM AN ILE-TRNA SYNTHETASE STRUCTURE WITH TRNA(ILE) AND MUPIROCIN

Silvian, L.F., Wang, J., Steitz, T.A.

(1999) Science 285: 1074-1077

Released	2000-08-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Staphylococcus aureus
Macromolecule	ISOLEUCYL-TRNA SYNTHETASE (protein) ISOLEUCYL-TRNA (nucleic acid)
Unique Ligands	K, MG, MRC, ZN

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1FWN \| pdb_00001fwn	Download File View File

AQUIFEX AEOLICUS KDO8P SYNTHASE IN COMPLEX WITH PEP

Duewel, H.S., Radaev, S., Wang, J., Woodard, R.W., Gatti, D.L.

(2001) J Biological Chem 276: 8393-8402

Released	2001-04-21
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Aquifex aeolicus
Macromolecule	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE (protein)
Unique Ligands	PEP, PO4

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1FWS \| pdb_00001fws	Download File View File

AQUIFEX AEOLICUS KDO8P SYNTHASE IN COMPLEX WITH PEP AND CADMIUM

Duewel, H.S., Radaev, S., Wang, J., Woodard, R.W., Gatti, D.L.

(2009) Biochemistry 48: 3610-3630

Released	2001-04-21
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Aquifex aeolicus
Macromolecule	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE (protein)
Unique Ligands	CD, PEP, PO4

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1FWT \| pdb_00001fwt	Download File View File

AQUIFEX AEOLICUS KDO8P SYNTHASE IN COMPLEX WITH PEP, E4P AND CADMIUM

Duewel, H.S., Radaev, S., Wang, J., Woodard, R.W., Gatti, D.L.

(2001) J Biological Chem 276: 8393-8402

Released	2001-04-21
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Aquifex aeolicus
Macromolecule	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE (protein)
Unique Ligands	CD, E4P, PEP, PO4

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1FWW \| pdb_00001fww	Download File View File

AQUIFEX AEOLICUS KDO8P SYNTHASE IN COMPLEX WITH PEP, A5P AND CADMIUM

Duewel, H.S., Radaev, S., Wang, J., Woodard, R.W., Gatti, D.L.

(2009) Biochemistry 48: 3610-3630

Released	2001-04-21
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Aquifex aeolicus
Macromolecule	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE (protein)
Unique Ligands	A5P, CD, PEP, PO4

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1FX6 \| pdb_00001fx6	Download File View File

AQUIFEX AEOLICUS KDO8P SYNTHASE

Duewel, H.S., Radaev, S., Wang, J., Woodard, R.W., Gatti, D.L.

(2001) J Biological Chem 276: 8393-8402

Released	2001-04-21
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Aquifex aeolicus
Macromolecule	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE (protein)
Unique Ligands	PO4

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1FXP \| pdb_00001fxp	Download File View File

AQUIFEX AEOLICUS KDO8P SYNTHASE IN COMPLEX WITH CADMIUM

Duewel, H.S., Radaev, S., Wang, J., Woodard, R.W., Gatti, D.L.

(2001) J Biological Chem 276: 8393-8402

Released	2001-04-21
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Aquifex aeolicus
Macromolecule	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE (protein)
Unique Ligands	CD, PO4

1 to 25 of 1,182 Structures

Page 1 of 48

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1C5L | pdb_00001c5l

1C5M | pdb_00001c5m

1C5N | pdb_00001c5n

1C5O | pdb_00001c5o

1C5P | pdb_00001c5p

1C5Q | pdb_00001c5q

1C5R | pdb_00001c5r

1C5S | pdb_00001c5s

1C5T | pdb_00001c5t

1C5U | pdb_00001c5u

1C5V | pdb_00001c5v

1C5W | pdb_00001c5w

1C5X | pdb_00001c5x

1C5Y | pdb_00001c5y

1C5Z | pdb_00001c5z

1CCP | pdb_00001ccp

1EFG | pdb_00001efg

1EQ1 | pdb_00001eq1

1FFY | pdb_00001ffy

1FWN | pdb_00001fwn

1FWS | pdb_00001fws

1FWT | pdb_00001fwt

1FWW | pdb_00001fww

1FX6 | pdb_00001fx6

1FXP | pdb_00001fxp