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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Smith, S.P."

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Search Summary

This query matches 53 Structures.

Refinements

Structure Determination Methodology

experimental (53)

Scientific Name of Source Organism

	Homo sapiens (37)
	Mus musculus (10)
	Clostridium perfringens (8)
	Acetivibrio thermocellus (2)
	Acetivibrio thermocellus ATCC 27405 (2)
	Bos taurus (1)
	Clostridium perfringens ATCC 13124 (1)
	Geobacillus stearothermophilus (1)
	Methanothermobacter thermautotrophicus (1)

Taxonomy

	Eukaryota (40)
	Bacteria (12)
	Archaea (1)

Experimental Method

	X-RAY DIFFRACTION (51)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (53)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (9)
	2.0 - 2.5 (12)
	2.5 - 3.0 (15)
	3.0 - 3.5 (10)
	3.5 - 4.0 (2)
	4.0 - 4.5 (1)
	> 4.5 (1)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (17)
	2010 - 2014 (7)
	2015 - 2019 (5)
	2020 - 2024 (23)

Enzyme Classification Name

	Hydrolases (9)
	Transferases (10)
	Oxidoreductases (3)

Symmetry Type

	Asymmetric (44)
	Cyclic (10)
	Dihedral (1)

SCOP Classification

	All beta proteins (11)
	All alpha proteins (8)
	Alpha and beta proteins (a+b) (4)
	Alpha and beta proteins (a/b) (4)
	Artifacts (4)
	Multi-domain proteins (alpha and beta) (3)

AllSelected

1 to 25 of 53 Structures

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1MA1 \| pdb_00001ma1	Download File View File

Structure and properties of the atypical iron superoxide dismutase from Methanobacterium thermoautotrophicum

Adams, J.J., Anderson, B.F., Renault, J.P., Verchere-Beaur, C., Morgenstern-Badarau, I., Jameson, G.B.

To be published

Released	2002-08-21
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	superoxide dismutase (protein)
Unique Ligands	FE

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1ZGN \| pdb_00001zgn	Download File View File

Crystal Structure of the Glutathione Transferase Pi in Complex with Dinitrosyl-diglutathionyl Iron Complex

Parker, L.J., Adams, J.J., Parker, M.W.

(2005) J Biological Chem 280: 42172-42180

Released	2005-11-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Glutathione S-transferase P (protein)
Unique Ligands	FE, GSH, MES, NO

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2A2R \| pdb_00002a2r	Download File View File

Crystal Structure of Glutathione Transferase Pi in complex with S-nitrosoglutathione

Parker, L.J., Morton, C.J., Adams, J.J., Parker, M.W.

(2006) Protein Sci 15: 1093-1105

Released	2006-06-06
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	Glutathione S-transferase P (protein)
Unique Ligands	CA, CO3, GSN, MES

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2A2S \| pdb_00002a2s	Download File View File

Crystal Structure of Human Glutathione Transferase in complex with S-nitrosoglutathione in the absence of reducing agent

Parker, L.J., Morton, C.J., Adams, J.J., Parker, M.W.

(2006) Protein Sci 15: 1093-1105

Released	2006-06-06
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Glutathione S-transferase P (protein)
Unique Ligands	CA, CO3, GSN, MES

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2AEW \| pdb_00002aew	Download File View File

A model for growth hormone receptor activation based on subunit rotation within a receptor dimer

Adams, J.J., McKinstry, W.J., Parker, M.W., Waters, M.J.

(2005) Nat Struct Mol Biol 12: 814-821

Released	2005-11-01
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Growth hormone receptor (protein)

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2AKQ \| pdb_00002akq	Download File View File

The structure of bovine B-lactoglobulin A in crystals grown at very low ionic strength

Adams, J.J., Anderson, B.F., Norris, G.E., Creamer, L.K., Jameson, G.B.

(2006) J Struct Biol 154: 246-254

Released	2005-08-16
Method	X-RAY DIFFRACTION 3 Å
Organisms	Bos taurus
Macromolecule	Beta-lactoglobulin variant A (protein)

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2B59 \| pdb_00002b59	Download File View File

The type II cohesin dockerin complex

Adams, J.J., Smith, S.P., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2006) Proc Natl Acad Sci U S A 103: 305-310

Released	2005-10-11
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	Acetivibrio thermocellus Acetivibrio thermocellus ATCC 27405
Macromolecule	COG1196: Chromosome segregation ATPases (protein) Cellulosomal scaffolding protein A (protein)
Unique Ligands	CA

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2JH2 \| pdb_00002jh2	Download File View File

X-ray crystal structure of a cohesin-like module from Clostridium perfringens

Chitayat, S., Gregg, K., Adams, J.J., Ficko-Blean, E., Bayer, E.A., Boraston, A.B., Smith, S.P.

(2008) J Mol Biology 375: 20

Released	2007-11-06
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Clostridium perfringens
Macromolecule	O-GLCNACASE NAGJ (protein)

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2JNK \| pdb_00002jnk	Download File View File

Solution structure of a dockerin-containing modular pair from a family 84 glycoside hydrolase

Chitayat, S., Adams, J.J., Bayer, E.A., Smith, S.P.

(2008) J Mol Biology 381: 1202-1212

Released	2008-01-29
Method	SOLUTION NMR
Organisms	Clostridium perfringens
Macromolecule	Hyalurononglucosaminidase (protein)

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2O4E \| pdb_00002o4e	Download File View File

The solution structure of a protein-protein interaction module from a family 84 glycoside hydrolase of Clostridium perfringens

Chitayat, S., Adams, J.J., Gregg, K., Boraston, A.B., Smith, S.P.

(2008) J Mol Biology 375: 20-28

Released	2007-11-06
Method	SOLUTION NMR
Organisms	Clostridium perfringens
Macromolecule	O-GlcNAcase nagJ (protein)

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2OZN \| pdb_00002ozn	Download File View File

The Cohesin-Dockerin Complex of NagJ and NagH from Clostridium perfringens

Adams, J.J., Boraston, A., Smith, S.P.

(2008) Proc Natl Acad Sci U S A 105: 12194-12199

Released	2008-05-06
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Clostridium perfringens Clostridium perfringens ATCC 13124
Macromolecule	Hyalurononglucosaminidase (protein) O-GlcNAcase nagJ (protein)
Unique Ligands	CA, CL

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2QUG \| pdb_00002qug	Download File View File

Crystal structure of alpha-1-antitrypsin, crystal form A

Hansen, G., Morton, C.J., Pearce, M.C., Feil, S.C., Adams, J.J., Parker, M.W., Bottomley, S.P.

(2008) Protein Sci 17: 2127-2133

Released	2008-08-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Alpha-1-antitrypsin (protein)

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2V5C \| pdb_00002v5c	Download File View File

Family 84 glycoside hydrolase from Clostridium perfringens, 2.1 Angstrom structure

Ficko-Blean, E., Gregg, K.J., Adams, J.J., Hehemann, J.H., Smith, S.J., Czjzek, M., Boraston, A.B.

(2009) J Biological Chem 284: 9876

Released	2009-01-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Clostridium perfringens
Macromolecule	O-GLCNACASE NAGJ (protein)
Unique Ligands	CA, CAC, NA

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2V5D \| pdb_00002v5d	Download File View File

Structure of a Family 84 Glycoside Hydrolase and a Family 32 Carbohydrate-Binding Module in Tandem from Clostridium perfringens.

Ficko-Blean, E., Gregg, K.J., Adams, J.J., Hehemann, J.H., Smith, S.J., Czjzek, M., Boraston, A.B.

(2009) J Biological Chem 284: 9876

Released	2009-01-27
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Clostridium perfringens
Macromolecule	O-GLCNACASE NAGJ (protein)
Unique Ligands	CA

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2VO8 \| pdb_00002vo8	Download File View File

Cohesin module from Clostridium perfringens ATCC13124 family 33 glycoside hydrolase.

Gregg, K., Adams, J.J., Bayer, E.A., Boraston, A.B., Smith, S.P.

(2008) Proc Natl Acad Sci U S A 105: 12194

Released	2008-09-02
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Clostridium perfringens
Macromolecule	EXO-ALPHA-SIALIDASE (protein)

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2W1N \| pdb_00002w1n	Download File View File

cohesin and fibronectin type-III double module construct from the Clostridium perfringens glycoside hydrolase GH84C

Ficko-Blean, E., Gregg, K.J., Adams, J.J., Hehemann, J.H., Czjzek, M., Smith, S.J., Boraston, A.B.

(2009) J Biological Chem 284: 9876

Released	2009-02-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Clostridium perfringens
Macromolecule	O-GLCNACASE NAGJ (protein)
Unique Ligands	ACT

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3CWL \| pdb_00003cwl	Download File View File

Crystal structure of alpha-1-antitrypsin, crystal form B

Morton, C.J., Hansen, G., Feil, S.C., Adams, J.J., Parker, M.W.

(2008) Protein Sci 17: 2127-2133

Released	2008-09-23
Method	X-RAY DIFFRACTION 2.44 Å
Organisms	Homo sapiens
Macromolecule	Alpha-1-antitrypsin (protein)
Unique Ligands	CL

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3CWM \| pdb_00003cwm	Download File View File

Crystal structure of alpha-1-antitrypsin complexed with citrate

Morton, C.J., Hansen, G., Feil, S.C., Adams, J.J., Parker, M.W.

(2008) Protein Sci 17: 2127-2133

Released	2008-09-23
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Homo sapiens
Macromolecule	Alpha-1-antitrypsin (protein)
Unique Ligands	CIT

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3KCP \| pdb_00003kcp	Download File View File

Crystal structure of interacting Clostridium thermocellum multimodular components

Adams, J.J., Currie, M.A., Bayer, E.A., Jia, Z., Smith, S.P.

(2010) J Mol Biology 396: 833-839

Released	2010-02-09
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Acetivibrio thermocellus ATCC 27405
Macromolecule	Cellulosomal-scaffolding protein A (protein) Cellulosome anchoring protein, cohesin region (protein)
Unique Ligands	CA, CL

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3TF7 \| pdb_00003tf7	Download File View File

42F3 QL9/H2-Ld complex

Adams, J.J., Kranz, D.M., Garcia, K.C.

(2011) Immunity 35: 681-693

Released	2011-12-07
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Mus musculus
Macromolecule	42F3 Mut7 scFv (42F3 alpha chain, linker, 42F3 beta chain) (protein) H2-Ld SBM2 (protein) QL9 peptide (QLSPFPFDL) (protein)
Unique Ligands	GOL

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3TFK \| pdb_00003tfk	Download File View File

42F3-p4B10/H2-Ld

Adams, J.J., Kranz, D.M., Garcia, K.C.

(2011) Immunity 35: 681-693

Released	2011-12-07
Method	X-RAY DIFFRACTION 2.753 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	42F3 alpha (protein) 42F3 beta (protein) H2-Ld SBM2 (protein) p4B10 peptide (protein)
Unique Ligands	NO3

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3TJH \| pdb_00003tjh	Download File View File

42F3-p3A1/H2-Ld complex

Adams, J.J., Kruse, A., Kranz, D.M., Garcia, K.C.

(2011) Immunity 35: 681-693

Released	2011-12-07
Method	X-RAY DIFFRACTION 2.12 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	42F3 alpha (protein) 42F3 beta (protein) H2-Ld SBM2 (protein) p3A1 (protein)

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3TPU \| pdb_00003tpu	Download File View File

42F3 p5E8/H2-Ld complex

Adams, J.J., Kranz, D.M., Garcia, K.C.

(2011) Immunity 35: 681-693

Released	2011-12-07
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	42F3 alpha (protein) 42F3 beta (protein) H2-Ld SBM2 (protein) p5E8 peptide (protein)
Unique Ligands	EDO, SO4

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4FL4 \| pdb_00004fl4	Download File View File

Scaffoldin conformation and dynamics revealed by a ternary complex from the Clostridium thermocellum cellulosome

Currie, M.A., Adams, J.J., Faucher, F., Bayer, E.A., Jia, Z., Smith, S.P., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2012) J Biological Chem 287: 26953-26961

Released	2012-06-27
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Acetivibrio thermocellus
Macromolecule	Cellulosome anchoring protein cohesin region (protein) Glycoside hydrolase family 9 (protein) Scaffolding dockerin binding protein A (protein)
Unique Ligands	CA, SO4

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4MS8 \| pdb_00004ms8	Download File View File

42F3 TCR pCPB9/H-2Ld Complex

Birnbaum, M.E., Adams, J.J., Garcia, K.C.

(2016) Nat Immunol 17: 87-94

Released	2014-09-24
Method	X-RAY DIFFRACTION 1.922 Å
Organisms	Mus musculus
Macromolecule	42F3 alpha (protein) 42F3 beta (protein) H-2 class I histocompatibility antigen, L-D alpha chain (protein) pCPB9 (protein)

1 to 25 of 53 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1MA1 | pdb_00001ma1

1ZGN | pdb_00001zgn

2A2R | pdb_00002a2r

2A2S | pdb_00002a2s

2AEW | pdb_00002aew

2AKQ | pdb_00002akq

2B59 | pdb_00002b59

2JH2 | pdb_00002jh2

2JNK | pdb_00002jnk

2O4E | pdb_00002o4e

2OZN | pdb_00002ozn

2QUG | pdb_00002qug

2V5C | pdb_00002v5c

2V5D | pdb_00002v5d

2VO8 | pdb_00002vo8

2W1N | pdb_00002w1n

3CWL | pdb_00003cwl

3CWM | pdb_00003cwm

3KCP | pdb_00003kcp

3TF7 | pdb_00003tf7

3TFK | pdb_00003tfk

3TJH | pdb_00003tjh

3TPU | pdb_00003tpu

4FL4 | pdb_00004fl4

4MS8 | pdb_00004ms8