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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Sauder, J.M."

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Search Summary

This query matches 302 Structures.

Refinements

Structure Determination Methodology

experimental (302)

Scientific Name of Source Organism

	Homo sapiens (60)
	Mus musculus (21)
	Geobacillus thermodenitrificans NG80-2 (18)
	Ramazzottius varieornatus (13)
	Alcaligenes faecalis (10)
	Staphylococcus aureus subsp. aureus MRSA252 (9)
	Thermococcus kodakarensis KOD1 (9)
	Aeropyrum pernix K1 (8)
	Bos taurus (8)
	Phytolacca americana (8)

More...

Taxonomy

	Eukaryota (164)
	Bacteria (117)
	Archaea (26)
	Riboviria (7)
	Eukaryota (eukaryotes) (2)
	other sequences (2)

Experimental Method

	X-RAY DIFFRACTION (285)
	SOLUTION NMR (14)
	ELECTRON MICROSCOPY (3)
	NEUTRON DIFFRACTION (2)
	SOLUTION SCATTERING (1)

Polymer Entity Type

	Protein (301)
	DNA (9)
	RNA (2)

Refinement Resolution (Å)

	0.5 - 1.0 (9)
	1.0 - 1.5 (44)
	1.5 - 2.0 (94)
	2.0 - 2.5 (77)
	2.5 - 3.0 (55)
	3.0 - 3.5 (9)
	3.5 - 4.0 (1)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (28)
	2000 - 2004 (33)
	2005 - 2009 (38)
	2010 - 2014 (73)
	2015 - 2019 (87)
	2020 - 2024 (42)

Enzyme Classification Name

	Oxidoreductases (58)
	Transferases (52)
	Hydrolases (37)
	Isomerases (22)
	Lyases (18)
	Ligases (2)

Membrane Protein Annotation

	mpstruc (7)
	OPM (5)
	MemProtMD (2)
	PDBTM (2)

Symmetry Type

	Asymmetric (169)
	Cyclic (95)
	Dihedral (44)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a/b) (80)
	All beta proteins (89)
	Alpha and beta proteins (a+b) (31)
	Artifacts (28)
	All alpha proteins (34)
	Coiled coil proteins (7)
	Membrane and cell surface proteins and peptides (2)
	Multi-domain proteins (alpha and beta) (2)
	Small proteins (1)

AllSelected

1 to 25 of 302 Structures

Page 1 of 13

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1BQ5 \| pdb_00001bq5	Download File View File

NITRITE REDUCTASE FROM ALCALIGENES XYLOSOXIDANS GIFU 1051

Inoue, T., Gotowda, M., Deligeer, Suzuki, S., Kataoka, K., Yamaguchi, K., Watanabe, H., Goho, M., Yasushi, K.A.I.

(1998) J Biochem 124: 876-879

Released	1999-08-21
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Achromobacter xylosoxidans
Macromolecule	NITRITE REDUCTASE (protein)
Unique Ligands	CU

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1BQK \| pdb_00001bqk	Download File View File

OXIDIZED PSEUDOAZURIN

Inoue, T., Nishio, N., Hamanaka, S., Shimomura, T., Harada, S., Suzuki, S., Kohzuma, T., Shidara, S., Iwasaki, H., Kai, Y.

(1999) J Biological Chem 274: 17845-17852

Released	1999-08-17
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Achromobacter cycloclastes
Macromolecule	PSEUDOAZURIN (protein)
Unique Ligands	CU

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1BQR \| pdb_00001bqr	Download File View File

REDUCED PSEUDOAZURIN

Inoue, T., Nishio, N., Hamanaka, S., Shimomura, T., Harada, S., Suzuki, S., Kohzuma, T., Shidara, S., Iwasaki, H., Kai, Y.

(1999) J Biological Chem 274: 17845-17852

Released	1999-08-17
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Achromobacter cycloclastes
Macromolecule	PSEUDOAZURIN (protein)
Unique Ligands	CU

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1BWV \| pdb_00001bwv	Download File View File

Activated Ribulose 1,5-Bisphosphate Carboxylase/Oxygenase (RUBISCO) Complexed with the Reaction Intermediate Analogue 2-Carboxyarabinitol 1,5-Bisphosphate

Sugawara, H., Yamamoto, H., Shibata, N., Inoue, T., Miyake, C., Yokota, A., Kai, Y.

(1999) J Biological Chem 274: 15655-15661

Released	1999-09-27
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Galdieria partita
Macromolecule	PROTEIN (RIBULOSE BISPHOSPHATE CARBOXYLASE) (protein)
Unique Ligands	CAP, MG

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1BXU \| pdb_00001bxu	Download File View File

OXIDIZED PLASTOCYANIN FROM SYNECHOCOCCUS SP.

Inoue, T., Sugawara, H., Hamanaka, S., Tsukui, H., Suzuki, E., Kohzuma, T., Kai, Y.

(1999) Biochemistry 38: 6063-6069

Released	1999-06-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Synechococcus elongatus PCC 7942 = FACHB-805
Macromolecule	PLASTOCYANIN (protein)
Unique Ligands	CU

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1BXV \| pdb_00001bxv	Download File View File

REDUCED PLASTOCYANIN FROM SYNECHOCOCCUS SP.

Inoue, T., Sugawara, H., Hamanaka, S., Tsukui, H., Suzuki, E., Kohzuma, T., Kai, Y.

(1999) Biochemistry 38: 6063-6069

Released	1999-06-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Synechococcus elongatus PCC 7942 = FACHB-805
Macromolecule	PLASTOCYANIN (protein)
Unique Ligands	CU

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1BYO \| pdb_00001byo	Download File View File

WILD-TYPE PLASTOCYANIN FROM SILENE

Sugawara, H., Inoue, T., Li, C., Gotowda, M., Hibino, T., Takabe, T., Kai, Y.

(1999) J Biochem 125: 899-903

Released	1999-10-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Silene latifolia subsp. alba
Macromolecule	PROTEIN (PLASTOCYANIN) (protein)
Unique Ligands	CU

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1BYP \| pdb_00001byp	Download File View File

E43K,D44K DOUBLE MUTANT PLASTOCYANIN FROM SILENE

Sugawara, H., Inoue, T., Li, C., Gotowda, M., Hibino, T., Takabe, T., Kai, Y.

(1999) J Biochem 125: 899-903

Released	1999-10-19
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Silene latifolia subsp. alba
Macromolecule	PROTEIN (PLASTOCYANIN) (protein)
Unique Ligands	CU

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1CUO \| pdb_00001cuo	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF ISOMER-2 AZURIN FROM METHYLOMONAS J

Inoue, T., Nishio, N., Kai, Y., Suzuki, S., Kataoka, K.

(2003) J Mol Biology 333: 117-124

Released	2000-08-23
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Methylomonas sp. J
Macromolecule	PROTEIN (AZURIN ISO-2) (protein)
Unique Ligands	CU

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1FIY \| pdb_00001fiy	Download File View File

THREE-DIMENSIONAL STRUCTURE OF PHOSPHOENOLPYRUVATE CARBOXYLASE FROM ESCHERICHIA COLI AT 2.8 A RESOLUTION

Kai, Y., Matsumura, H., Inoue, T., Terada, K., Nagara, Y., Yoshinaga, T., Kihara, A., Izui, K.

(1999) Proc Natl Acad Sci U S A 96: 823-828

Released	1999-02-09
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli K-12
Macromolecule	PHOSPHOENOLPYRUVATE CARBOXYLASE (protein)
Unique Ligands	ASP

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1GTW \| pdb_00001gtw	Download File View File

crystal structure of C/EBPbeta bZip homodimer bound to a DNA fragment from the tom-1A promoter

Tahirov, T.H., Ogata, K.

To be published

Released	2004-02-06
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	CAAT/ENHANCER BINDING PROTEIN BETA (protein) 5'-D(APAPTPGPTPGPGPCPGPCP* APAPTPCPCPT)-3' (nucleic acid) 5'-D(TPAPGPGPAPTPTPGPCPGP CPCPAPCPAP*T)-3' (nucleic acid)

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1GU4 \| pdb_00001gu4	Download File View File

Crystal structure of C/EBPBETA BZIP homodimer bound to a high affinity DNA fragment

Tahirov, T.H., Ogata, K.

To be published

Released	2003-06-26
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	CAAT/ENHANCER BINDING PROTEIN BETA (protein) 5'-D(APAPTPAPTPTPGPCPGPCP* APAPTPCPCPT)-3' (nucleic acid) 5'-D(TPAPGPGPAPTPTPGPCPGP CPAPAPTPAP*T)-3' (nucleic acid)

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1GU5 \| pdb_00001gu5	Download File View File

Crystal structure of C/EBPBETA BZIP homodimer bound to a DNA fragment from the MIM-1 promoter

Tahirov, T.H., Ogata, K.

To be published

Released	2003-06-26
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	CAAT/ENHANCER BINDING PROTEIN BETA (protein) 5'-D(APTPGPAPTPTPGPGPCPCP* APAPCPAPCPA)-3' (nucleic acid) 5'-D(TPTPGPTPGPTPTPGPGPCP CPAPAPTPCP*A)-3' (nucleic acid)

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1H88 \| pdb_00001h88	Download File View File

CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX1

Tahirov, T.H., Ogata, K.

(2002) Cell 108: 57

Released	2002-01-28
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	CCAAT/ENHANCER BINDING PROTEIN BETA (protein) MYB PROTO-ONCOGENE PROTEIN (protein) DNA(5'-(CPCPAPGPTPCPCPGPTPTPAP APGPGPAPTPTPGPCPGPCPCPAPCPAPT)-3') (nucleic acid) DNA(5'-(GPAPTPGPTPGPGPCPGPCPAP APTPCPCPTPTPAPAPCPGPGPAPCPTPG)-3') (nucleic acid)
Unique Ligands	NH4

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1H89 \| pdb_00001h89	Download File View File

CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX2

Tahirov, T.H., Ogata, K.

(2002) Cell 108: 57

Released	2002-01-28
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	CAAT/ENHANCER BINDING PROTEIN BETA (protein) MYB PROTO-ONCOGENE PROTEIN (protein) DNA(5'-(CPCPAPGPTPCPCPGPTPTPAP APGPGPAPTPTPGPCPGPCPCPAPCPAPT)-3') (nucleic acid) DNA(5'-(GPAPTPGPTPGPGPCPGPCPAP APTPCPCPTPTPAPAPCPGPGPAPCPTPG)-3') (nucleic acid)
Unique Ligands	K

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1H8A \| pdb_00001h8a	Download File View File

CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX3

Tahirov, T.H., Ogata, K.

(2002) Cell 108: 57

Released	2002-01-28
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Avian myeloblastosis virus Homo sapiens
Macromolecule	CAAT/ENHANCER BINDING PROTEIN BETA (protein) MYB TRANSFORMING PROTEIN (protein) DNA(5'-(CPCPAPGPTPCPCPGPTPTPAP APGPGPAPTPTPGPCPGPCPCPAPCPAPT)-3') (nucleic acid) DNA(5'-(GPAPTPGPTPGPGPCPGPCPAP APTPCPCPTPTPAPAPCPGPGPAPCPTPG)-3') (nucleic acid)

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1IDY \| pdb_00001idy	Download File View File

STRUCTURE OF MYB TRANSFORMING PROTEIN, NMR, MINIMIZED AVERAGE STRUCTURE

Furukawa, K., Oda, M., Nakamura, H.

(1996) Proc Natl Acad Sci U S A 93: 13583-13588

Released	1996-12-23
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3 (protein)

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1IDZ \| pdb_00001idz	Download File View File

STRUCTURE OF MYB TRANSFORMING PROTEIN, NMR, 20 STRUCTURES

Furukawa, K., Oda, M., Nakamura, H.

(1996) Proc Natl Acad Sci U S A 93: 13583-13588

Released	1996-12-23
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3 (protein)

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1IO4 \| pdb_00001io4	Download File View File

CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN-CBFBETA CORE DOMAIN HETERODIMER AND C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER

Tahirov, T.H., Ogata, K.

(2001) Cell 104: 755-767

Released	2001-03-12
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	CAAT/ENHANCER BINDING PROTEIN BETA (protein) CORE-BINDING FACTOR, BETA SUBUNIT (protein) RUNT-RELATED TRANSCRIPTION FACTOR 1 (protein) CSF-1R PROMOTER (nucleic acid)
Unique Ligands	AU

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1IR1 \| pdb_00001ir1	Download File View File

Crystal Structure of Spinach Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase (Rubisco) Complexed with CO2, Mg2+ and 2-Carboxyarabinitol-1,5-Bisphosphate

Mizohata, E., Matsumura, H., Okano, Y., Kumei, M., Takuma, H., Onodera, J., Kato, K., Shibata, N., Inoue, T., Yokota, A., Kai, Y.

(2002) J Mol Biology 316: 679-691

Released	2002-03-13
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Spinacia oleracea
Macromolecule	Large subunit of Rubisco (protein) Small subunit of Rubisco (protein)
Unique Ligands	CAP, MG

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1IR2 \| pdb_00001ir2	Download File View File

Crystal Structure of Activated Ribulose-1,5-bisphosphate Carboxylase/oxygenase (Rubisco) from Green alga, Chlamydomonas reinhardtii Complexed with 2-Carboxyarabinitol-1,5-bisphosphate (2-CABP)

Mizohata, E., Matsumura, H., Okano, Y., Kumei, M., Takuma, H., Onodera, J., Kato, K., Shibata, N., Inoue, T., Yokota, A., Kai, Y.

(2002) J Mol Biology 316: 679-691

Released	2002-03-20
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Chlamydomonas reinhardtii
Macromolecule	Large subunit of Rubisco (protein) Small subunit of Rubisco (protein)
Unique Ligands	CAP, GOL, MG

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1IUZ \| pdb_00001iuz	Download File View File

PLASTOCYANIN

Shibata, N.

(1999) J Biological Chem 274: 4225-4230

Released	1997-08-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Ulva pertusa
Macromolecule	PLASTOCYANIN (protein)
Unique Ligands	CU, SO4

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1IWA \| pdb_00001iwa	Download File View File

RUBISCO FROM GALDIERIA PARTITA

Okano, Y., Mizohata, E., Xie, Y., Matsumura, H., Sugawara, H., Inoue, T., Yokota, A., Kai, Y.

(2002) FEBS Lett 527: 33-36

Released	2003-04-30
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Galdieria partita
Macromolecule	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (protein) ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit (protein)
Unique Ligands	SO4

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1IYH \| pdb_00001iyh	Download File View File

Crystal structure of hematopoietic prostaglandin D synthase

Inoue, T.

(2003) Nat Struct Biol 10: 291-296

Released	2003-04-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	HEMATOPOIETIC PROSTAGLANDIN D SYNTHASE (protein)
Unique Ligands	GSH, MG

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1IYI \| pdb_00001iyi	Download File View File

Crystal structure of hematopoietic prostaglandin D synthase

Inoue, T.

(2003) Nat Struct Biol 10: 291-296

Released	2003-04-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	HEMATOPOIETIC PROSTAGLANDIN D SYNTHASE (protein)
Unique Ligands	CA, GSH

1 to 25 of 302 Structures

Page 1 of 13

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1BQ5 | pdb_00001bq5

1BQK | pdb_00001bqk

1BQR | pdb_00001bqr

1BWV | pdb_00001bwv

1BXU | pdb_00001bxu

1BXV | pdb_00001bxv

1BYO | pdb_00001byo

1BYP | pdb_00001byp

1CUO | pdb_00001cuo

1FIY | pdb_00001fiy

1GTW | pdb_00001gtw

1GU4 | pdb_00001gu4

1GU5 | pdb_00001gu5

1H88 | pdb_00001h88

1H89 | pdb_00001h89

1H8A | pdb_00001h8a

1IDY | pdb_00001idy

1IDZ | pdb_00001idz

1IO4 | pdb_00001io4

1IR1 | pdb_00001ir1

1IR2 | pdb_00001ir2

1IUZ | pdb_00001iuz

1IWA | pdb_00001iwa

1IYH | pdb_00001iyh

1IYI | pdb_00001iyi