RCSB PDB: Search

1ARQ \| pdb_00001arq	Download File View File

RELAXATION MATRIX REFINEMENT OF THE SOLUTION STRUCTURE OF THE ARC REPRESSOR

Bonvin, A.M.J.J., Vis, H., Burgering, M.J.M., Breg, J.N., Boelens, R., Kaptein, R.

(1994) J Mol Biology 236: 328-341

Released	1994-01-31
Method	SOLUTION NMR
Organisms	Lederbergvirus P22
Macromolecule	ARC REPRESSOR (protein)

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1ARR \| pdb_00001arr	Download File View File

RELAXATION MATRIX REFINEMENT OF THE SOLUTION STRUCTURE OF THE ARC REPRESSOR

Bonvin, A.M.J.J., Vis, H., Burgering, M.J.M., Breg, J.N., Boelens, R., Kaptein, R.

(1994) J Mol Biology 236: 328-341

Released	1994-01-31
Method	SOLUTION NMR
Organisms	Lederbergvirus P22
Macromolecule	ARC REPRESSOR (protein)

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1CCM \| pdb_00001ccm	Download File View File

DIRECT NOE REFINEMENT OF CRAMBIN FROM 2D NMR DATA USING A SLOW-COOLING ANNEALING PROTOCOL

Bonvin, A.M.J.J., Rullmann, J.A.C., Lamerichs, R.M.J.N., Boelens, R., Kaptein, R.

(1993) Proteins 15: 385-400

Released	1993-10-31
Method	SOLUTION NMR
Organisms	Crambe hispanica subsp. abyssinica
Macromolecule	CRAMBIN (protein)

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1CCN \| pdb_00001ccn	Download File View File

DIRECT NOE REFINEMENT OF CRAMBIN FROM 2D NMR DATA USING A SLOW-COOLING ANNEALING PROTOCOL

Bonvin, A.M.J.J., Rullmann, J.A.C., Lamerichs, R.M.J.N., Boelens, R., Kaptein, R.

(1991) J Biomol NMR 1: 305-309

Released	1993-10-31
Method	SOLUTION NMR
Organisms	Crambe hispanica subsp. abyssinica
Macromolecule	CRAMBIN (protein)

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1CJG \| pdb_00001cjg	Download File View File

NMR STRUCTURE OF LAC REPRESSOR HP62-DNA COMPLEX

Spronk, C.A.E.M., Bonvin, A.M.J.J., Radha, P.K., Melacini, G., Boelens, R., Kaptein, R.

(1999) Structure 7: 1483-1492

Released	2000-01-01
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	PROTEIN (LAC REPRESSOR) (protein) DNA (5'-D(GPAPAPTPTPGPTPGPAPGPCPGPCPTPCPAPCPAPAPTPTPC)-3') (nucleic acid)

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1HRA \| pdb_00001hra	Download File View File

THE SOLUTION STRUCTURE OF THE HUMAN RETINOIC ACID RECEPTOR-BETA DNA-BINDING DOMAIN

Knegtel, R.M.A., Katahira, M., Schilthuis, J.G., Bonvin, A.M.J.J., Boelens, R., Eib, D., Van Der Saag, P.T., Kaptein, R.

(1993) J Biomol NMR 3: 1-17

Released	1994-01-31
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	RETINOIC ACID RECEPTOR (protein)
Unique Ligands	ZN

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1KFT \| pdb_00001kft	Download File View File

Solution Structure of the C-Terminal domain of UvrC from E-coli

Singh, S., Folkers, G.E., Bonvin, A.M.J.J., Boelens, R., Wechselberger, R., Niztayev, A., Kaptein, R.

(2002) EMBO J 21: 6257-6266

Released	2002-11-20
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	Excinuclease ABC subunit C (protein)

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1L1M \| pdb_00001l1m	Download File View File

SOLUTION STRUCTURE OF A DIMER OF LAC REPRESSOR DNA-BINDING DOMAIN COMPLEXED TO ITS NATURAL OPERATOR O1

Kalodimos, C.G., Bonvin, A.M.J.J., Salinas, R.K., Wechselberger, R., Boelens, R., Kaptein, R.

(2002) EMBO J 21: 2866-2876

Released	2002-06-26
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	Lactose operon repressor (protein) 5'-D(APAPAPTPTPGPTPTPAPTPCPCPGPCPTPCPAPCPAPAPTPTPC)-3' (nucleic acid) 5'-D(GPAPAPTPTPGPTPGPAPGPCPGPGPAPTPAPAPCPAPAPTPTPT)-3' (nucleic acid)

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1LQC \| pdb_00001lqc	Download File View File

LAC REPRESSOR HEADPIECE (RESIDUES 1-56), NMR, 32 STRUCTURES

Slijper, M., Bonvin, A.M.J.J., Boelens, R., Kaptein, R.

(1996) J Mol Biology 259: 761-773

Released	1997-02-12
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	LAC REPRESSOR (protein)

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1OSL \| pdb_00001osl	Download File View File

Solution structure of a dimeric lactose DNA-binding domain complexed to a nonspecific DNA sequence

Kalodimos, C.G., Bonvin, A.M.J.J., Boelens, R., Kaptein, R.

(2004) Science 305: 386-389

Released	2004-05-04
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	Lactose operon repressor (protein) 5'-D(CPGPAPTPAPAPGPAPTPAPTPCPTPTPAPTPCPG)-3' (nucleic acid)

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1RGD \| pdb_00001rgd	Download File View File

STRUCTURE REFINEMENT OF THE GLUCOCORTICOID RECEPTOR-DNA BINDING DOMAIN FROM NMR DATA BY RELAXATION MATRIX CALCULATIONS

Van Tilborg, M.A.A., Bonvin, A.M.J.J., Hard, K., Davis, A., Maler, B., Boelens, R., Yamamoto, K.R., Kaptein, R.

(1995) J Mol Biology 247: 689-700

Released	1995-02-14
Method	SOLUTION NMR
Organisms	Rattus norvegicus
Macromolecule	GLUCOCORTICOID RECEPTOR (protein)
Unique Ligands	ZN

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1SIY \| pdb_00001siy	Download File View File

NMR structure of mung bean non-specific lipid transfer protein 1

Lin, K.F., Liu, Y.N., Hsu, S.T.D., Samuel, D., Cheng, C.S., Bonvin, A.M.J.J., Lyu, P.C.

(2005) Biochemistry 44: 5703-5712

Released	2005-04-05
Method	SOLUTION NMR
Organisms	Vigna radiata var. radiata
Macromolecule	Nonspecific lipid-transfer protein 1 (protein)

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1UR6 \| pdb_00001ur6	Download File View File

NMR based structural model of the UbcH5B-CNOT4 complex

Dominguez, C., Bonvin, A.M.J.J., Winkler, G.S., Van Schaik, F.M.A., Timmers, H.Th.M., Boelens, R.

(2004) Structure 12: 633

Released	2004-05-07
Method	SOLUTION NMR THEORETICAL MODEL
Organisms	Homo sapiens
Macromolecule	POTENTIAL TRANSCRIPTIONAL REPRESSOR NOT4HP (protein) UBIQUITIN-CONJUGATING ENZYME E2-17 KDA 2 (protein)
Unique Ligands	ZN

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1W4U \| pdb_00001w4u	Download File View File

NMR solution structure of the ubiquitin conjugating enzyme UbcH5B

Houben, K., Dominguez, C., Van Schaik, F.M.A., Timmers, H.T.M., Bonvin, A.M.J.J., Boelens, R.

(2004) J Mol Biology 344: 513

Released	2004-11-10
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	UBIQUITIN-CONJUGATING ENZYME E2-17 KDA 2 (protein)

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1WCO \| pdb_00001wco	Download File View File

The solution structure of the nisin-lipid II complex

Hsu, S.-T.D., Breukink, E., Tischenko, E., Lutters, M.A.G., de Kruijff, B., Kaptein, R., Bonvin, A.M.J.J., van Nuland, N.A.J.

(2004) Nat Struct Mol Biol 11: 963-967

Released	2005-03-07
Method	SOLUTION NMR
Organisms	Lactococcus lactis Monarthropalpus flavus
Macromolecule	ALA-FGA-LYS-DAL-DAL PEPTIDE (protein) Lantibiotic (protein)
Unique Ligands	FDF
Unique branched monosaccharides	MUB, NAG

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2BGF \| pdb_00002bgf	Download File View File

NMR structure of Lys48-linked di-ubiquitin using chemical shift perturbation data together with RDCs and 15N-relaxation data

Van Dijk, A.D.J., Fushman, D., Bonvin, A.M.J.J.

(2005) Proteins 60: 367

Released	2005-08-31
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	DI-UBIQUITIN (protein)

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2BJC \| pdb_00002bjc	Download File View File

NMR structure of a protein-DNA complex of an altered specificity mutant of the lac repressor headpiece that mimics the gal repressor

Salinas, R.K., Folkers, G.E., Bonvin, A.M.J.J., Das, D., Boelens, R., Kaptein, R.

(2005) Chembiochem 6: 1628

Released	2005-10-18
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	LACTOSE OPERON REPRESSOR (protein) 5'-D(GPAPAPTPTPGPTPAPAPGP CPGPCPTPTPAPCPAPAPTPTPC)-3' (nucleic acid)

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2BUN \| pdb_00002bun	Download File View File

Solution structure of the BLUF domain of AppA 5-125

Grinstead, J.S., Hsu, S.-T., Laan, W., Bonvin, A.M.J.J., Hellingwerf, K.J., Boelens, R., Kaptein, R.

(2006) Chembiochem 7: 187-193

Released	2005-12-07
Method	SOLUTION NMR
Organisms	Cereibacter sphaeroides 2.4.1
Macromolecule	APPA (protein)
Unique Ligands	FAD

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2C06 \| pdb_00002c06	Download File View File

NMR-based model of the complex of the toxin Kid and a 5-nucleotide substrate RNA fragment (AUACA)

Kamphuis, M.B., Bonvin, A.M.J.J., Monti, M.C., Lemonnier, M., Munoz-Gomez, A., Van Den Heuvel, R.H.H., Diaz-Orejas, R., Boelens, R.

(2006) J Mol Biology 357: 115

Released	2006-02-08
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	KID TOXIN PROTEIN (protein) 5'-R(APUPAPCP*AP)-3' (nucleic acid)

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2K6G \| pdb_00002k6g	Download File View File

Solution structure of the DNA binding BRCT domain from the large subunit of human Replication Factor C

Kobayashi, M., Siegal, G., Ab, E., Bonvin, A.M.J.J.

To be published

Released	2009-09-22
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Replication factor C subunit 1 (protein)

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2KXI \| pdb_00002kxi	Download File View File

Solution NMR structure of the apoform of NarE (NMB1343)

Koehler, C., Carlier, L., Veggi, D., Soriani, M., Pizza, M., Boelens, R., Bonvin, A.M.J.J.

To be published

Released	2011-03-02
Method	SOLUTION NMR
Organisms	Neisseria meningitidis MC58
Macromolecule	Uncharacterized protein (protein)

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2VDA \| pdb_00002vda	Download File View File

Solution structure of the SecA-signal peptide complex

Gelis, I., Bonvin, A.M.J.J., Keramisanou, D., Koukaki, M., Gouridis, G., Karamanou, S., Economou, A., Kalodimos, C.G.

(2007) Cell 131: 756

Released	2007-11-27
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	MALTOPORIN (protein) TRANSLOCASE SUBUNIT SECA (protein)

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2XY8 \| pdb_00002xy8	Download File View File

Paramagnetic-based NMR structure of the complex between the N- terminal epsilon domain and the theta domain of the DNA polymerase III

Schmitz, C., Bonvin, A.M.J.J.

(2011) J Biomol NMR 50: 263-266

Released	2011-06-29
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	DNA POLYMERASE III SUBUNIT EPSILON (protein) DNA POLYMERASE III SUBUNIT THETA (protein)
Unique Ligands	CA

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1ARQ | pdb_00001arq

1ARR | pdb_00001arr

1CCM | pdb_00001ccm

1CCN | pdb_00001ccn

1CJG | pdb_00001cjg

1HRA | pdb_00001hra

1KFT | pdb_00001kft

1L1M | pdb_00001l1m

1LQC | pdb_00001lqc

1OSL | pdb_00001osl

1RGD | pdb_00001rgd

1SIY | pdb_00001siy

1UR6 | pdb_00001ur6

1W4U | pdb_00001w4u

1WCO | pdb_00001wco

2BGF | pdb_00002bgf

2BJC | pdb_00002bjc

2BUN | pdb_00002bun

2C06 | pdb_00002c06

2K6G | pdb_00002k6g

2KXI | pdb_00002kxi

2VDA | pdb_00002vda

2XY8 | pdb_00002xy8