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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Quistgaard, E.M."

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Search Summary

This query matches 38 Structures.

Refinements

Structure Determination Methodology

experimental (38)

Scientific Name of Source Organism

	Homo sapiens (12)
	Escherichia coli K-12 (11)
	Streptococcus thermophilus LMG 18311 (8)
	Thermus thermophilus (8)
	Lama glama (3)
	Sus scrofa (3)
	Shewanella oneidensis MR-1 (2)
	Streptococcus thermophilus (2)
	synthetic construct (2)
	Aspergillus oryzae (1)

Taxonomy

	Bacteria (26)
	Eukaryota (19)
	other sequences (2)
	Eukaryota (eukaryotes) (1)

Experimental Method

X-RAY DIFFRACTION (38)

Polymer Entity Type

Protein (38)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (8)
	2.0 - 2.5 (12)
	2.5 - 3.0 (5)
	3.0 - 3.5 (5)
	3.5 - 4.0 (2)
	4.0 - 4.5 (2)
	> 4.5 (2)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (13)
	2015 - 2019 (21)
	2020 - 2024 (3)

Enzyme Classification Name

	Isomerases (10)
	Translocases (3)
	Hydrolases (1)
	Lyases (1)

Membrane Protein Annotation

	PDBTM (20)
	mpstruc (18)
	MemProtMD (17)
	OPM (10)

Symmetry Type

	Asymmetric (33)
	Cyclic (4)
	Dihedral (2)

SCOP Classification

	All beta proteins (1)
	Artifacts (1)
	Membrane and cell surface proteins and peptides (1)

AllSelected

1 to 25 of 38 Structures

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3F6K \| pdb_00003f6k	Download File View File

Crystal structure of the Vps10p domain of human sortilin/NTS3 in complex with neurotensin

Quistgaard, E.M., Madsen, P., Groftehauge, M.K., Nissen, P., Petersen, C.M., Thirup, S.

(2009) Nat Struct Mol Biol 16: 96-98

Released	2008-12-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Neurotensin (protein) Sortilin (protein)
Unique Ligands	GOL, PGE
Unique branched monosaccharides	BMA, NAG

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4DT4 \| pdb_00004dt4	Download File View File

Crystal structure of the PPIase-chaperone SlpA with the chaperone binding site occupied by the linker of the purification tag

Quistgaard, E.M., Nordlund, P., Loew, C.

(2012) FASEB J 26: 4003-4013

Released	2012-07-04
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Escherichia coli K-12
Macromolecule	FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase (protein)

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4JA3 \| pdb_00004ja3	Download File View File

Partially occluded inward open conformation of the xylose transporter XylE from E. coli

Quistgaard, E.M., Low, C., Moberg, P., Tresaugues, L., Nordlund, P.

(2013) Nat Struct Mol Biol 20: 766-768

Released	2013-05-01
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Escherichia coli K-12
Macromolecule	D-xylose-proton symporter (protein)
Unique Ligands	CD, LU

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4JA4 \| pdb_00004ja4	Download File View File

Inward open conformation of the xylose transporter XylE from E. coli

Quistgaard, E.M., Low, C., Moberg, P., Tresaugues, L., Nordlund, P.

(2013) Nat Struct Mol Biol 20: 766-768

Released	2013-05-01
Method	X-RAY DIFFRACTION 4.2 Å
Organisms	Escherichia coli K-12
Macromolecule	D-xylose-proton symporter (protein)
Unique Ligands	CD

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4JZL \| pdb_00004jzl	Download File View File

Crystal structure of BAP31 vDED at alkaline pH

Quistgaard, E.M., Low, C., Moberg, P., Guettou, F., Maddi, K., Nordlund, P.

(2013) PLoS One 8: e71111-e71111

Released	2013-09-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	B-cell receptor-associated protein 31 (protein)
Unique Ligands	GOL

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4JZP \| pdb_00004jzp	Download File View File

Crystal structure of BAP31 vDED at acidic pH

Quistgaard, E.M., Low, C., Moberg, P., Guettou, F., Maddi, K., Nordlund, P.

(2013) PLoS One 8: e71111-e71111

Released	2013-09-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	B-cell receptor-associated protein 31 (protein)
Unique Ligands	PG4, SO4

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4LEP \| pdb_00004lep	Download File View File

Structural insights into substrate recognition in proton dependent oligopeptide transporters

Guettou, F., Quistgaard, E.M., Tresaugues, L., Moberg, P., Jegerschold, C., Zhu, L., Jong, A.J., Nordlund, P., Low, C.

(2013) EMBO Rep 14: 804-810

Released	2013-07-10
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Shewanella oneidensis MR-1
Macromolecule	Proton:oligopeptide symporter POT family (protein)
Unique Ligands	AFS, ZN

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4MEW \| pdb_00004mew	Download File View File

Structure of the core fragment of human PR70

Dovega, R.B., Quistgaard, E.M., Tsutakawa, S., Anandapadamanaban, M., Low, C., Nordlund, P.

(2014) PLoS One 9: e101846-e101846

Released	2014-08-13
Method	X-RAY DIFFRACTION 1.993 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta (protein)
Unique Ligands	CA, GOL

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4NY3 \| pdb_00004ny3	Download File View File

Human PTPA in complex with peptide

Loew, C., Quistgaard, E.M., Nordlund, P.

(2014) Biol Chem 395: 881-889

Released	2014-07-23
Method	X-RAY DIFFRACTION 1.797 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine-protein phosphatase 2A activator (protein) Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform (protein)
Unique Ligands	GOL, SO4

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4ODK \| pdb_00004odk	Download File View File

Structure of SlyD from Thermus thermophilus in complex with T1 peptide

Quistgaard, E.M., Low, C., Nordlund, P.

(2016) BMC Biol 14: 82-82

Released	2015-01-14
Method	X-RAY DIFFRACTION 1.401 Å
Organisms	Aspergillus oryzae Thermus thermophilus
Macromolecule	Guanyl-specific ribonuclease T1 (protein) Peptidyl-prolyl cis-trans isomerase SlyD (protein)
Unique Ligands	CL

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4ODL \| pdb_00004odl	Download File View File

Structure of SlyD from Thermus thermophilus in complex with S2 peptide

Quistgaard, E.M., Low, C., Nordlund, P.

(2016) BMC Biol 14: 82-82

Released	2015-01-14
Method	X-RAY DIFFRACTION 2.916 Å
Organisms	Escherichia coli K-12 Thermus thermophilus
Macromolecule	30S ribosomal protein S2 (protein) Peptidyl-prolyl cis-trans isomerase SlyD (protein)
Unique Ligands	CL

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4ODM \| pdb_00004odm	Download File View File

Structure of SlyD from Thermus thermophilus in complex with S2-W23A peptide

Quistgaard, E.M., Low, C., Nordlund, P.

(2016) BMC Biol 14: 82-82

Released	2015-01-14
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Escherichia coli K-12 Thermus thermophilus
Macromolecule	30S ribosomal protein S2 (protein) Peptidyl-prolyl cis-trans isomerase SlyD (protein)
Unique Ligands	ACT, CL, GOL

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4ODN \| pdb_00004odn	Download File View File

Structure of SlyD from Thermus thermophilus in complex with S2-plus peptide

Quistgaard, E.M., Low, C., Nordlund, P.

(2016) BMC Biol 14: 82-82

Released	2015-01-14
Method	X-RAY DIFFRACTION 1.598 Å
Organisms	Escherichia coli K-12 Thermus thermophilus
Macromolecule	30S ribosomal protein S2 (protein) Peptidyl-prolyl cis-trans isomerase SlyD (protein)
Unique Ligands	CL, GOL, NA, SO4

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4ODO \| pdb_00004odo	Download File View File

Structure of SlyD from Thermus thermophilus in complex with FK506

Quistgaard, E.M., Low, C., Nordlund, P.

(2016) BMC Biol 14: 82-82

Released	2015-01-14
Method	X-RAY DIFFRACTION 1.599 Å
Organisms	Thermus thermophilus
Macromolecule	Peptidyl-prolyl cis-trans isomerase SlyD (protein)
Unique Ligands	BTB, CL, FK5, GOL, MG

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4ODP \| pdb_00004odp	Download File View File

Structure of SlyD delta-IF from Thermus thermophilus in complex with S2-W23A peptide

Quistgaard, E.M., Low, C., Nordlund, P.

(2016) BMC Biol 14: 82-82

Released	2015-01-14
Method	X-RAY DIFFRACTION 1.747 Å
Organisms	Escherichia coli K-12 Homo sapiens Thermus thermophilus
Macromolecule	30S ribosomal protein S2 (protein) Peptidyl-prolyl cis-trans isomerase SlyD, Peptidyl-prolyl cis-trans isomerase FKBP1A chimera (protein)
Unique Ligands	CA, CL, NI

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4ODQ \| pdb_00004odq	Download File View File

Structure of SlyD delta-IF from Thermus thermophilus in complex with S3 peptide

Quistgaard, E.M., Low, C., Nordlund, P.

(2016) BMC Biol 14: 82-82

Released	2015-01-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli K-12 Homo sapiens Thermus thermophilus
Macromolecule	30S ribosomal protein S3 (protein) Peptidyl-prolyl cis-trans isomerase SlyD, Peptidyl-prolyl cis-trans isomerase FKBP1A chimera (protein)
Unique Ligands	CA, CL, NI

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4ODR \| pdb_00004odr	Download File View File

Structure of SlyD delta-IF from Thermus thermophilus in complex with FK506

Quistgaard, E.M., Low, C., Nordlund, P.

(2016) BMC Biol 14: 82-82

Released	2015-01-14
Method	X-RAY DIFFRACTION 1.929 Å
Organisms	Homo sapiens Thermus thermophilus
Macromolecule	Peptidyl-prolyl cis-trans isomerase SlyD, Peptidyl-prolyl cis-trans isomerase FKBP1A chimera (protein)
Unique Ligands	ACT, CL, FK5, GOL, ZN

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4PO7 \| pdb_00004po7	Download File View File

Structure of the Sortilin:neurotensin complex at excess neurotensin concentration

Quistgaard, E.M., Groftehauge, M.K., Thirup, S.S.

(2014) Protein Sci 23: 1291-1300

Released	2014-07-23
Method	X-RAY DIFFRACTION 2.66 Å
Organisms	Homo sapiens
Macromolecule	Neurotensin/neuromedin N (protein) Sortilin (protein)
Unique Ligands	NAG, PG4
Unique branched monosaccharides	BMA, NAG

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4TPG \| pdb_00004tpg	Download File View File

Selectivity mechanism of a bacterial homologue of the human drug peptide transporters PepT1 and PepT2

Guettou, F., Quistgaard, E.M., Raba, M., Moberg, P., Low, C., Nordlund, P.

(2014) Nat Struct Mol Biol 21: 728

Released	2014-07-09
Method	X-RAY DIFFRACTION 3.91 Å
Organisms	Shewanella oneidensis MR-1 synthetic construct
Macromolecule	Ala-L-3-Br-Tyr-Ala (protein) Proton:oligopeptide symporter POT family (protein)
Unique Ligands	LMT, ZN

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4W7Y \| pdb_00004w7y	Download File View File

Dimeric BAP29 vDED with disulfide bonds in crystal contacts

Quistgaard, E.M.

(2014) Chem Commun (Camb) 50: 14995-14997

Released	2014-10-29
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	B-cell receptor-associated protein 29 (protein)
Unique Ligands	ACT, MPD

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4W7Z \| pdb_00004w7z	Download File View File

Tetrameric BAP29 vDED without disulfide bonds

Quistgaard, E.M.

(2014) Chem Commun (Camb) 50: 14995-14997

Released	2014-10-29
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	B-cell receptor-associated protein 29 (protein)
Unique Ligands	ACT, SO4

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4W80 \| pdb_00004w80	Download File View File

Tetrameric BAP29 vDED with disulfide bonds in crystal contacts

Quistgaard, E.M.

(2014) Chem Commun (Camb) 50: 14995-14997

Released	2014-10-29
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	B-cell receptor-associated protein 29 (protein)
Unique Ligands	SO4

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5MMT \| pdb_00005mmt	Download File View File

Inward open PepTSt from Streptococcus thermophilus crystallized in space group P3121

Quistgaard, E.M., Molledo, M.M., Nordlund, P., Loew, C.

(2017) PLoS One 12: e0173126-e0173126

Released	2017-01-25
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Streptococcus thermophilus LMG 18311
Macromolecule	Di-or tripeptide:H+ symporter (protein)

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5OXK \| pdb_00005oxk	Download File View File

PepTSt in complex with dipeptide Ala-Gln

Martinez Molledo, M., Quistgaard, E.M., Loew, C.

(2018) Structure 26: 467-476.e4

Released	2018-02-21
Method	X-RAY DIFFRACTION 2.38 Å
Organisms	Streptococcus thermophilus LMG 18311
Macromolecule	Di-or tripeptide:H+ symporter (protein)
Unique Ligands	1PE, 78M, 78N, ALA, GLN, PO4

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5OXL \| pdb_00005oxl	Download File View File

PepTSt in complex with dipeptide Ala-Leu

Martinez Molledo, M., Quistgaard, E.M., Loew, C.

(2018) Structure 26: 467-476.e4

Released	2018-02-21
Method	X-RAY DIFFRACTION 2.66 Å
Organisms	Streptococcus thermophilus LMG 18311
Macromolecule	Di-or tripeptide:H+ symporter (protein)
Unique Ligands	1PE, 78M, 78N, ALA, EPE, LEU, PO4

1 to 25 of 38 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

3F6K | pdb_00003f6k

4DT4 | pdb_00004dt4

4JA3 | pdb_00004ja3

4JA4 | pdb_00004ja4

4JZL | pdb_00004jzl

4JZP | pdb_00004jzp

4LEP | pdb_00004lep

4MEW | pdb_00004mew

4NY3 | pdb_00004ny3

4ODK | pdb_00004odk

4ODL | pdb_00004odl

4ODM | pdb_00004odm

4ODN | pdb_00004odn

4ODO | pdb_00004odo

4ODP | pdb_00004odp

4ODQ | pdb_00004odq

4ODR | pdb_00004odr

4PO7 | pdb_00004po7

4TPG | pdb_00004tpg

4W7Y | pdb_00004w7y

4W7Z | pdb_00004w7z

4W80 | pdb_00004w80

5MMT | pdb_00005mmt

5OXK | pdb_00005oxk

5OXL | pdb_00005oxl