RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Author = "Patel, D.J."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 497 Structures.

Refinements

Structure Determination Methodology

experimental (497)

Scientific Name of Source Organism

	Homo sapiens (158)
	Mus musculus (36)
	synthetic construct (35)
	Arabidopsis thaliana (26)
	Thermococcus onnurineus (17)
	Saccharolobus solfataricus P2 (15)
	Drosophila melanogaster (11)
	Thermococcus onnurineus NA1 (11)
	Bacteroidales bacterium (8)
	Thermus thermophilus HB27 (8)

More...

Taxonomy

	Eukaryota (263)
	Bacteria (91)
	Archaea (46)
	other sequences (35)
	Eukaryota (eukaryotes) (14)
	Riboviria (6)
	Duplodnaviria (4)
	Riboviria (RNA viruses and viroids) (2)

Experimental Method

	X-RAY DIFFRACTION (370)
	SOLUTION NMR (88)
	ELECTRON MICROSCOPY (39)

Polymer Entity Type

	Protein (380)
	RNA (155)
	DNA (144)

Refinement Resolution (Å)

	1.0 - 1.5 (9)
	1.5 - 2.0 (90)
	2.0 - 2.5 (101)
	2.5 - 3.0 (120)
	3.0 - 3.5 (66)
	3.5 - 4.0 (21)
	> 4.5 (2)

Release Date

	1990 - 1994 (10)
	1995 - 1999 (39)
	2000 - 2004 (28)
	2005 - 2009 (86)
	2010 - 2014 (187)
	2015 - 2019 (96)
	2020 - 2024 (50)
	2025 - 2029 (1)

Enzyme Classification Name

	Transferases (91)
	Hydrolases (95)
	Oxidoreductases (12)
	Isomerases (7)
	Ligases (9)
	Lyases (2)

Membrane Protein Annotation

OPM (4)

Symmetry Type

	Asymmetric (287)
	Cyclic (111)
	Dihedral (6)
	Helical (2)

SCOP Classification

	Alpha and beta proteins (a+b) (35)
	All alpha proteins (30)
	Artifacts (30)
	All beta proteins (31)
	Alpha and beta proteins (a/b) (12)
	Small proteins (8)
	Multi-domain proteins (alpha and beta) (5)
	Peptides (8)

AllSelected

1 to 25 of 497 Structures

Page 1 of 20

Sort by

Explore in 3D

107D \| pdb_0000107d	Download File View File

SOLUTION STRUCTURE OF THE COVALENT DUOCARMYCIN A-DNA DUPLEX COMPLEX

Lin, C.H., Patel, D.J.

(1995) J Mol Biology 248: 162-179

Released	1995-05-08
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(CPCPTPTPTPTPC)-3') (nucleic acid) DNA (5'-D(GPAPAPAPAPGPG)-3') (nucleic acid)
Unique Ligands	DUO

Explore in 3D

134D \| pdb_0000134d	Download File View File

SOLUTION STRUCTURE OF A PURINE(DOT)PURINE(DOT)PYRIMIDINE DNA TRIPLEX CONTAINING G(DOT)GC AND T(DOT)AT TRIPLES

Patel, D.J., Radhakrishnan, I.

(1993) Structure 1: 135-152

Released	1994-04-30
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	DNA TRIPLEX (nucleic acid)

Explore in 3D

135D \| pdb_0000135d	Download File View File

SOLUTION STRUCTURE OF A PURINE(DOT)PURINE(DOT)PYRIMIDINE DNA TRIPLEX CONTAINING G(DOT)GC AND T(DOT)AT TRIPLES

Radhakrishnan, I., Patel, D.J.

(1993) Structure 1: 135-152

Released	1994-04-30
Method	SOLUTION NMR
Macromolecule	DNA TRIPLEX (nucleic acid)

Explore in 3D

136D \| pdb_0000136d	Download File View File

SOLUTION STRUCTURE OF A PURINE(DOT)PURINE(DOT)PYRIMIDINE DNA TRIPLEX CONTAINING G(DOT)GC AND T(DOT)AT TRIPLES

Radhakrishnan, I., Patel, D.J.

(1993) Structure 1: 135-152

Released	1994-04-30
Method	SOLUTION NMR
Macromolecule	DNA TRIPLEX (nucleic acid)

Explore in 3D

139D \| pdb_0000139d	Download File View File

SOLUTION STRUCTURE OF A PARALLEL-STRANDED G-QUADRUPLEX DNA

Patel, D.J., Wang, Y.

(1993) J Mol Biology 234: 1171-1183

Released	1994-01-31
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(TPTPGPGPGPGP*T)-3') (nucleic acid)

Explore in 3D

143D \| pdb_0000143d	Download File View File

SOLUTION STRUCTURE OF THE HUMAN TELOMERIC REPEAT D(AG3[T2AG3]3) OF THE G-QUADRUPLEX

Wang, Y., Patel, D.J.

(1993) Structure 1: 263-282

Released	1994-04-30
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	DNA (5'-D(APGPGPGPTPTPAPGPGPGPTPTPAPGPGPGPTPTPAPGPGPG)-3') (nucleic acid)

Explore in 3D

146D \| pdb_0000146d	Download File View File

SOLUTION STRUCTURE OF THE MITHRAMYCIN DIMER-DNA COMPLEX

Sastry, M., Patel, D.J.

(1993) Biochemistry 32: 6588-6604

Released	1995-03-31
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(TPCPGPCPGPA)-3') (nucleic acid)
Unique Ligands	CRH, MG
Unique branched monosaccharides	DDA, DDL, MDA

Explore in 3D

149D \| pdb_0000149d	Download File View File

SOLUTION STRUCTURE OF A PYRIMIDINE(DOT)PURINE(DOT) PYRIMIDINE DNA TRIPLEX CONTAINING T(DOT)AT, C+(DOT)GC AND G(DOT)TA TRIPLES

Radhakrishnan, I., Patel, D.J.

(1994) Structure 2: 17

Released	1994-04-30
Method	SOLUTION NMR
Macromolecule	5'-D(CPCPTPAPTPTPC)-3' (nucleic acid) 5'-D(CPTPTPGPTPCPC)-3' (nucleic acid) 5'-D(GPAPAPTPAPGP*G)-3' (nucleic acid)

Explore in 3D

177D \| pdb_0000177d	Download File View File

SOLUTION STRUCTURE AND HYDRATION PATTERNS OF A PYRIMIDINE(DOT)PURINE(DOT)PYRIMIDINE DNA TRIPLEX CONTAINING A NOVEL T(DOT)CG TRIPLE

Radhakrishnan, I., Patel, D.J.

(1994) J Mol Biology 241: 600-619

Released	1994-10-15
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(GPAPAPCPAPGPGPTPTPTPTPTCPCPTPGPTPTPCPTPTPTPTPTCPTPTPTPTPCP*C)-3') (nucleic acid)

Explore in 3D

179D \| pdb_0000179d	Download File View File

SOLUTION STRUCTURE OF THE D(T-C-G-A) DUPLEX AT ACIDIC PH: A PARALLEL-STRANDED HELIX CONTAINING C+.C, G.G AND A.A PAIRS

Wang, Y., Patel, D.J.

(1994) J Mol Biology 242: 508-526

Released	1994-07-31
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(TPCPGPA)-3') (nucleic acid)

Explore in 3D

186D \| pdb_0000186d	Download File View File

SOLUTION STRUCTURE OF THE TETRAHYMENA TELOMERIC REPEAT D(T2G4)4 G-TETRAPLEX

Wang, Y., Patel, D.J.

(1994) Structure 2: 1141-1156

Released	1994-11-01
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(TPTPGPGPGPGPTPTPGPGPGPGPTPTPGPGPGPGPTPTPGPGPGPG)-3') (nucleic acid)

Explore in 3D

193D \| pdb_0000193d	Download File View File

SOLUTION STRUCTURE OF A QUINOMYCIN BISINTERCALATOR-DNA COMPLEX

Chen, H., Patel, D.J.

(1995) J Mol Biology 246: 164

Released	1995-02-27
Method	SOLUTION NMR
Macromolecule	QUINOMYCIN (protein) DNA (5'-D(APCPAPCPGPTPGPT)-3') (nucleic acid)
Unique Ligands	HQU

Explore in 3D

199D \| pdb_0000199d	Download File View File

Solution structure of the monoalkylated mitomycin c-DNA complex

Sastry, M., Fiala, R., Lipman, R., Tomasz, M., Patel, D.J.

(1995) J Mol Biology 247: 338-359

Released	1995-02-07
Method	SOLUTION NMR
Macromolecule	DNA (5'-D((DI)PCPAPCPGPTPCP(DI)PT)-3') (nucleic acid) DNA (5'-D(APCPGPAPCPGPTPGPC)-3') (nucleic acid)
Unique Ligands	MOC

Explore in 3D

1A4T \| pdb_00001a4t	Download File View File

SOLUTION STRUCTURE OF PHAGE P22 N PEPTIDE-BOX B RNA COMPLEX, NMR, 20 STRUCTURES

Cai, Z., Gorin, A.A., Frederick, R., Ye, X., Hu, W., Majumdar, A., Kettani, A., Patel, D.J.

(1998) Nat Struct Biol 5: 203-212

Released	1998-04-29
Method	SOLUTION NMR
Organisms	Lederbergvirus P22
Macromolecule	20-MER BASIC PEPTIDE (protein) BOXB RNA (nucleic acid)

Explore in 3D

1A6H \| pdb_00001a6h	Download File View File

DNA QUADRUPLEX CONTAINING GCGC TETRAD, NMR, 4 STRUCTURES

Kettani, A., Kumar, R.A., Patel, D.J.

(1995) J Mol Biology 254: 638-656

Released	1998-06-17
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(GPCPGPGPTPTPTPGPCPGPG)-3') (nucleic acid)

Explore in 3D

1A8N \| pdb_00001a8n	Download File View File

SOLUTION STRUCTURE OF A NA+ CATION STABILIZED DNA QUADRUPLEX CONTAINING G.G.G.G AND G.C.G.C TETRADS FORMED BY G-G-G-C REPEATS OBSERVED IN AAV AND HUMAN CHROMOSOME 19, NMR, 8 STRUCTURES

Kettani, A., Bouaziz, S., Gorin, A., Zhao, H., Jones, R., Patel, D.J.

(1998) J Mol Biology 282: 619-636

Released	1998-10-14
Method	SOLUTION NMR
Macromolecule	DNA QUADRUPLEX CONTAINING G.G.G.G AND G.C.G.C TETRADS (nucleic acid)

Explore in 3D

1A8W \| pdb_00001a8w	Download File View File

A K+ CATION-INDUCED CONFORMATIONAL SWITCH WITHIN A LOOP SPANNING SEGMENT OF A DNA QUADRUPLEX CONTAINING G-G-G-C REPEATS, NMR, 8 STRUCTURES

Bouaziz, S., Kettani, A., Patel, D.J.

(1998) J Mol Biology 282: 637-652

Released	1998-10-14
Method	SOLUTION NMR
Macromolecule	DNA QUADRUPLEX CONTAINING GGGG TETRADS AND GC WATSON-CRICK BASE PAIRS (nucleic acid)

Explore in 3D

1AFF \| pdb_00001aff	Download File View File

DNA QUADRUPLEX CONTAINING GGGG TETRADS AND (T.A).A TRIADS, NMR, 8 STRUCTURES

Kettani, A., Bouaziz, S., Wang, W., Jones, R.A., Patel, D.J.

(1997) Nat Struct Biol 4: 382-389

Released	1997-08-20
Method	SOLUTION NMR
Macromolecule	QUADRUPLEX DNA (5'-D(TPAPGP*G)-3') (nucleic acid)

Explore in 3D

1AM0 \| pdb_00001am0	Download File View File

AMP RNA APTAMER COMPLEX, NMR, 8 STRUCTURES

Jiang, F., Kumar, R.A., Jones, R.A., Patel, D.J.

(1996) Nature 382: 183-186

Released	1997-07-23
Method	SOLUTION NMR
Macromolecule	RNA APTAMER (nucleic acid)
Unique Ligands	AMP

Explore in 3D

1AW4 \| pdb_00001aw4	Download File View File

STRUCTURAL BASIS OF DNA FOLDING AND RECOGNITION IN AMP-DNA APTAMER COMPLEX, NMR, 7 STRUCTURES

Lin, C.H., Patel, D.J.

(1997) Chem Biol 4: 817-832

Released	1998-04-15
Method	SOLUTION NMR
Macromolecule	ATP-BINDING DNA APTAMER (nucleic acid)
Unique Ligands	AMP

Explore in 3D

1AX6 \| pdb_00001ax6	Download File View File

SOLUTION STRUCTURE OF THE [AF]-C8-DG ADDUCT OPPOSITE A-2 DELETION SITE IN THE NARI HOT SPOT SEQUENCE CONTEXT; NMR, 6 STRUCTURES

Mao, B., Gorin, A.A., Gu, Z., Hingerty, B.E., Broyde, S., Patel, D.J.

(1997) Biochemistry 36: 14479-14490

Released	1998-07-01
Method	SOLUTION NMR
Macromolecule	DNA DUPLEX D(CTCGGC-[AF]G-CCATC)D(GATGGCCGAG) (nucleic acid)
Unique Ligands	AF

Explore in 3D

1AX7 \| pdb_00001ax7	Download File View File

SOLUTION STRUCTURE OF THE [AF]-C8-DG ADDUCT POSITIONED AT A TEMPLATE-PRIMER JUNCTION, NMR, 6 STRUCTURES

Mao, B., Gu, Z., Gorin, A.A., Hingerty, B.E., Broyde, S., Patel, D.J.

(1997) Biochemistry 36: 14491-14501

Released	1998-07-01
Method	SOLUTION NMR
Macromolecule	DNA DUPLEX D(AAC-[AF]G-CTACCATCC)D(GGATGGTAG) (nucleic acid)
Unique Ligands	AF

Explore in 3D

1AXL \| pdb_00001axl	Download File View File

SOLUTION CONFORMATION OF THE (-)-TRANS-ANTI-[BP]DG ADDUCT OPPOSITE A DELETION SITE IN DNA DUPLEX D(CCATC-[BP]G-CTACC)D(GGTAG--GATGG), NMR, 6 STRUCTURES

Feng, B., Gorin, A.A., Kolbanovskiy, A., Hingerty, B.E., Geacintov, N.E., Broyde, S., Patel, D.J.

(1997) Biochemistry 36: 13780-13790

Released	1998-07-01
Method	SOLUTION NMR
Macromolecule	DNA DUPLEX D(CCATC-[BP]G-CTACC)D(GGTAG--GATGG) (nucleic acid)
Unique Ligands	BAP

Explore in 3D

1AXO \| pdb_00001axo	Download File View File

STRUCTURAL ALIGNMENT OF THE (+)-TRANS-ANTI-[BP]DG ADDUCT POSITIONED OPPOSITE DC AT A DNA TEMPLATE-PRIMER JUNCTION, NMR, 6 STRUCTURES

Feng, B., Gorin, A.A., Hingerty, B.E., Geacintov, N.E., Broyde, S., Patel, D.J.

(1997) Biochemistry 36: 13769-13779

Released	1998-07-01
Method	SOLUTION NMR
Macromolecule	DNA DUPLEX D(AAC-[BP]G-CTACCATCC)D(GGATGGTAGC) (nucleic acid)
Unique Ligands	BAP

Explore in 3D

1AXU \| pdb_00001axu	Download File View File

SOLUTION NMR STRUCTURE OF THE [AP]DG ADDUCT OPPOSITE DA IN A DNA DUPLEX, NMR, 9 STRUCTURES

Gu, Z., Gorin, A.A., Krishnasami, R., Hingerty, B.E., Basu, A.K., Broyde, S., Patel, D.J.

(1999) Biochemistry 38: 10843-10854

Released	1998-07-01
Method	SOLUTION NMR
Macromolecule	DNA DUPLEX D(CCATC-[AP]G-CTACC)D(GGTAGAGATGG) (nucleic acid)
Unique Ligands	AP

1 to 25 of 497 Structures

Page 1 of 20

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

107D | pdb_0000107d

134D | pdb_0000134d

135D | pdb_0000135d

136D | pdb_0000136d

139D | pdb_0000139d

143D | pdb_0000143d

146D | pdb_0000146d

149D | pdb_0000149d

177D | pdb_0000177d

179D | pdb_0000179d

186D | pdb_0000186d

193D | pdb_0000193d

199D | pdb_0000199d

1A4T | pdb_00001a4t

1A6H | pdb_00001a6h

1A8N | pdb_00001a8n

1A8W | pdb_00001a8w

1AFF | pdb_00001aff

1AM0 | pdb_00001am0

1AW4 | pdb_00001aw4

1AX6 | pdb_00001ax6

1AX7 | pdb_00001ax7

1AXL | pdb_00001axl

1AXO | pdb_00001axo

1AXU | pdb_00001axu