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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Pardon, E."

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Search Summary

This query matches 8 Structures.

Refinements

Structure Determination Methodology

experimental (8)

Scientific Name of Source Organism

	Camelus dromedarius (6)
	Vicugna pacos (2)
	Aspergillus fumigatus (1)
	Aspergillus fumigatus Af293 (1)
	Homo sapiens (1)

Taxonomy

Eukaryota (8)

Experimental Method

X-RAY DIFFRACTION (8)

Polymer Entity Type

Protein (8)

Refinement Resolution (Å)

	1.5 - 2.0 (4)
	2.0 - 2.5 (1)
	2.5 - 3.0 (3)

Release Date

	2005 - 2009 (6)
	2020 - 2024 (2)

Enzyme Classification Name

	Transferases (2)
	Hydrolases (1)

Symmetry Type

	Asymmetric (6)
	Cyclic (2)

SCOP Classification

	All beta proteins (6)
	Artifacts (4)
	Alpha and beta proteins (a+b) (1)

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1 to 8 of 8 Structures

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1YC7 \| pdb_00001yc7	Download File View File

cAbAn33 VHH fragment against VSG

Conrath, K., Vincke, C., Stijlemans, B., Schymkowitz, J., Wyns, L., Muyldermans, S., Loris, R.

(2005) J Mol Biology 350: 112-125

Released	2005-06-14
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Camelus dromedarius
Macromolecule	anti-VSG immunoglobulin heavy chain variable domain cAbAn33 (protein)
Unique Ligands	SO4

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1YC8 \| pdb_00001yc8	Download File View File

cAbAn33- Y37V/E44G/R45L triple mutant

Conrath, K., Vincke, C., Stijlemans, B., Schymkowitz, J., Wyns, L., Muyldermans, S., Loris, R.

(2005) J Mol Biology 350: 112-125

Released	2005-06-14
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Camelus dromedarius
Macromolecule	anti-VSG immunoglobulin heavy chain variable domain cAbAn33 (protein)

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1YZZ \| pdb_00001yzz	Download File View File

Humanized caban33 at room temperature

Conrath, K., Vincke, C., Stijlemans, B., Schymkowitz, J., Decanniere, K., Muyldermans, S., Loris, R.

(2005) J Mol Biology 350: 112-125

Released	2005-06-14
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Camelus dromedarius
Macromolecule	anti-VSG immunoglobulin heavy chain variable domain cAbAn33 (protein)

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3DWT \| pdb_00003dwt	Download File View File

Structure of CabBCII-10 nanobody

Vincke, C., Loris, R., Muyldermans, S., Conrath, K.

(2008) J Biological Chem

Released	2008-12-02
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Camelus dromedarius
Macromolecule	cAbBCII-10 (protein)
Unique Ligands	GOL

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3EAK \| pdb_00003eak	Download File View File

NbBCII10 humanized (FGLA mutant)

Vincke, C., Loris, R., Saerens, D., Martinez-Rodriguez, S., Muyldermans, S., Conrath, K.

(2008) J Biological Chem

Released	2008-12-02
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Camelus dromedarius
Macromolecule	NbBCII10-FGLA (protein)
Unique Ligands	SO4

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3EBA \| pdb_00003eba	Download File View File

CAbHul6 FGLW mutant (humanized) in complex with human lysozyme

Loris, R., Vincke, C., Saerens, D., Martinez-Rodriguez, S., Muyldermans, S., Conrath, K.

(2009) J Biological Chem 284: 3273-3284

Released	2008-12-02
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Camelus dromedarius Homo sapiens
Macromolecule	CAbHul6 (protein) Lysozyme C (protein)
Unique Ligands	SO4

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8PE1 \| pdb_00008pe1	Download File View File

Crystal structure of Gel4 in complex with Nanobody 4

Macias-Leon, J., Redrado-Hernandez, S., Castro-Lopez, J., Sanz, A.B., Arias, M., Farkas, V., Vincke, C., Muyldermans, S., Pardo, J., Arroyo, J., Galvez, E., Hurtado-Guerrero, R.

(2024) Angew Chem Int Ed Engl 63: e202405823-e202405823

Released	2024-06-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Aspergillus fumigatus Af293 Vicugna pacos
Macromolecule	1,3-beta-glucanosyltransferase (protein) Nanobody 4 (protein)
Unique Ligands	MAN, NAG

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8PE2 \| pdb_00008pe2	Download File View File

Crystal structure of Gel4 in complex with Nanobody 3

Macias-Leon, J., Redrado-Hernandez, S., Castro-Lopez, J., Sanz, A.B., Arias, M., Farkas, V., Vincke, C., Muyldermans, S., Pardo, J., Arroyo, J., Galvez, E., Hurtado-Guerrero, R.

(2024) Angew Chem Int Ed Engl 63: e202405823-e202405823

Released	2024-06-19
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Aspergillus fumigatus Vicugna pacos
Macromolecule	1,3-beta-glucanosyltransferase (protein) Nanobody 3 (protein)
Unique Ligands	MAN, NAG, PO4

1 to 8 of 8 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1YC7 | pdb_00001yc7

cAbAn33 VHH fragment against VSG

1YC8 | pdb_00001yc8

cAbAn33- Y37V/E44G/R45L triple mutant

1YZZ | pdb_00001yzz

Humanized caban33 at room temperature

3DWT | pdb_00003dwt

Structure of CabBCII-10 nanobody

3EAK | pdb_00003eak

NbBCII10 humanized (FGLA mutant)

3EBA | pdb_00003eba

CAbHul6 FGLW mutant (humanized) in complex with human lysozyme

8PE1 | pdb_00008pe1

Crystal structure of Gel4 in complex with Nanobody 4

8PE2 | pdb_00008pe2

Crystal structure of Gel4 in complex with Nanobody 3

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1YC7 | pdb_00001yc7

1YC8 | pdb_00001yc8

1YZZ | pdb_00001yzz

3DWT | pdb_00003dwt

3EAK | pdb_00003eak

3EBA | pdb_00003eba

8PE1 | pdb_00008pe1

8PE2 | pdb_00008pe2