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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Osterman, A."

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Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Methanopyrus kandleri (5)
	synthetic construct (4)
	Bacillus anthracis (2)
	Escherichia coli (1)
	Francisella tularensis (1)
	Francisella tularensis subsp. tularensis (1)
	Mycobacterium tuberculosis (1)
	Synechocystis sp. PCC 6803 (1)
	Thermoactinomyces vulgaris (1)
	Thermotoga maritima (1)

Taxonomy

	Bacteria (9)
	Archaea (5)
	other sequences (4)

Experimental Method

X-RAY DIFFRACTION (14)

Polymer Entity Type

	Protein (14)
	DNA (4)
	RNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (6)
	2.5 - 3.0 (2)
	3.0 - 3.5 (2)
	3.5 - 4.0 (2)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (1)
	2005 - 2009 (5)
	2010 - 2014 (1)
	2015 - 2019 (2)
	2020 - 2024 (4)

Enzyme Classification Name

	Hydrolases (7)
	Transferases (5)

Symmetry Type

	Cyclic (10)
	Asymmetric (3)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (3)
	Alpha and beta proteins (a+b) (2)
	Artifacts (1)

AllSelected

1 to 14 of 14 Structures

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1K4M \| pdb_00001k4m	Download File View File

Crystal structure of E.coli nicotinic acid mononucleotide adenylyltransferase complexed to deamido-NAD

Zhang, H., Zhou, T., Kurnasov, O., Cheek, S., Grishin, N.V., Osterman, A.

(2002) Structure 10: 69-79

Released	2002-10-08
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	NaMN adenylyltransferase (protein)
Unique Ligands	CIT, NAD

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1OBR \| pdb_00001obr	Download File View File

CARBOXYPEPTIDASE T

Teplyakov, A., Polyakov, K., Obmolova, G., Osterman, A.

(1992) Eur J Biochem 208: 281-288

Released	1997-01-11
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermoactinomyces vulgaris
Macromolecule	CARBOXYPEPTIDASE T (protein)
Unique Ligands	CA, SO4, ZN

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1YB0 \| pdb_00001yb0	Download File View File

Structure of PlyL

Low, L.Y., Yang, C., Perego, M., Osterman, A., Liddington, R.C.

(2005) J Biological Chem 280: 35433-35439

Released	2005-08-23
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Bacillus anthracis
Macromolecule	prophage LambdaBa02, N-acetylmuramoyl-L-alanine amidase, family 2 (protein)
Unique Ligands	PO4, ZN

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2AR3 \| pdb_00002ar3	Download File View File

E90A mutant structure of PlyL

Low, L.Y., Yang, C., Perego, M., Osterman, A., Liddington, R.C.

(2005) J Biological Chem 280: 35433-35439

Released	2006-06-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus anthracis
Macromolecule	prophage lambdaba02, n-acetylmuramoyl-l-alanine amidase, family 2 (protein)
Unique Ligands	PO4, ZN

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2QJO \| pdb_00002qjo	Download File View File

crystal structure of a bifunctional NMN adenylyltransferase/ADP ribose pyrophosphatase (NadM) complexed with ADPRP and NAD from Synechocystis sp.

Huang, N., Sorci, L., Zhang, X., Brautigan, C., Raffaelli, N., Magni, G., Grishin, N.V., Osterman, A., Zhang, H.

(2008) Structure 16: 196-209

Released	2008-03-11
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Synechocystis sp. PCC 6803
Macromolecule	Bifunctional NMN adenylyltransferase/Nudix hydrolase (protein)
Unique Ligands	APR, NAD, POP, SO4

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2QJT \| pdb_00002qjt	Download File View File

Crystal structure of a bifunctional NMN adenylyltransferase/ADP ribose pyrophosphatase complexed with AMP and MN ion from Francisella tularensis

Huang, N., Sorci, L., Zhang, X., Brautigan, C., Raffaelli, N., Magni, G., Grishin, N.V., Osterman, A., Zhang, H.

(2008) Structure 16: 196-209

Released	2008-03-04
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Francisella tularensis
Macromolecule	Nicotinamide-nucleotide adenylyltransferase (protein)
Unique Ligands	AMP, MN

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2R5W \| pdb_00002r5w	Download File View File

Crystal structure of a bifunctional NMN adenylyltransferase/ADP ribose pyrophosphatase from Francisella tularensis

Huang, N., Sorci, L., Zhang, X., Brautigan, C., Li, X., Raffaelli, N., Grishin, N., Osterman, A., Zhang, H.

(2008) Structure 16: 196-209

Released	2008-03-04
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Francisella tularensis subsp. tularensis
Macromolecule	Nicotinamide-nucleotide adenylyltransferase (protein)
Unique Ligands	CL, MG

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3Q1Q \| pdb_00003q1q	Download File View File

Structure of a Bacterial Ribonuclease P Holoenzyme in Complex with tRNA

Reiter, N.J., Osterman, A., Torres-Larios, A., Swinger, K.K., Pan, T., Mondragon, A.

(2010) Nature 468: 784-789

Released	2011-03-09
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Thermotoga maritima
Macromolecule	Ribonuclease P protein component (protein) RNase P RNA (nucleic acid) TRNA (PHE) (nucleic acid)
Unique Ligands	MG, PO4

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4RPI \| pdb_00004rpi	Download File View File

Crystal Structure of Nicotinate Mononucleotide Adenylyltransferase from Mycobacterium tuberculosis

Rodionova, I., Zuccola, H., Sorci, L., Aleshin, A.E., Kazanov, M., Sergienko, E., Rubin, E., Locher, C., Osterman, A.

(2015) J Biological Chem 290: 7693-7706

Released	2015-01-28
Method	X-RAY DIFFRACTION 2.417 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	nicotinate-nucleotide adenylyltransferase (protein)
Unique Ligands	DMS, EPE

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5HM5 \| pdb_00005hm5	Download File View File

Crystal structure of Topo-97, an N-terminal 97kDa fragment of topoisomerase V

Rajan, R., Osterman, A., Mondragon, A.

(2016) Nucleic Acids Res 44: 3464-3474

Released	2016-03-09
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Methanopyrus kandleri
Macromolecule	Topoisomerase V (protein)

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8DF7 \| pdb_00008df7	Download File View File

Structure of M. kandleri topoisomerase V in complex with DNA. 38 base pair symmetric DNA complex

Osterman, A., Mondragon, A.

(2022) Elife 11:

Released	2022-08-31
Method	X-RAY DIFFRACTION 3.52 Å
Organisms	Methanopyrus kandleri synthetic construct
Macromolecule	Topoisomerase V (protein) DNA (39-MER) (nucleic acid)
Unique Ligands	K

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8DF8 \| pdb_00008df8	Download File View File

Structure of M. kandleri topoisomerase V in complex with DNA. 40 base pair symmetric DNA complex

Osterman, A., Mondragon, A.

(2022) Elife 11:

Released	2022-08-31
Method	X-RAY DIFFRACTION 2.92 Å
Organisms	Methanopyrus kandleri synthetic construct
Macromolecule	Topoisomerase V (protein) DNA (42-MER) (nucleic acid)
Unique Ligands	K, PO3, PO4

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8DF9 \| pdb_00008df9	Download File View File

Structure of M. kandleri topoisomerase V in complex with DNA. 38 base pair asymmetric DNA complex

Osterman, A., Mondragon, A.

(2022) Elife 11:

Released	2022-08-31
Method	X-RAY DIFFRACTION 3.24 Å
Organisms	Methanopyrus kandleri synthetic construct
Macromolecule	Unique protein chains: 1 Unique nucleic acid chains: 5
Unique Ligands	K, MG

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8DFB \| pdb_00008dfb	Download File View File

Structure of M. kandleri topoisomerase V in complex with DNA. 39 base pair symmetric DNA complex

Osterman, A., Mondragon, A.

(2022) Elife 11:

Released	2022-08-31
Method	X-RAY DIFFRACTION 3.17 Å
Organisms	Methanopyrus kandleri synthetic construct
Macromolecule	Topoisomerase V (protein) DNA (40-MER) (nucleic acid)
Unique Ligands	K

1 to 14 of 14 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1K4M | pdb_00001k4m

Crystal structure of E.coli nicotinic acid mononucleotide adenylyltransferase complexed to deamido-NAD

1OBR | pdb_00001obr

CARBOXYPEPTIDASE T

1YB0 | pdb_00001yb0

Structure of PlyL

2AR3 | pdb_00002ar3

E90A mutant structure of PlyL

2QJO | pdb_00002qjo

crystal structure of a bifunctional NMN adenylyltransferase/ADP ribose pyrophosphatase (NadM) complexed with ADPRP and NAD from Synechocystis sp.

2QJT | pdb_00002qjt

Crystal structure of a bifunctional NMN adenylyltransferase/ADP ribose pyrophosphatase complexed with AMP and MN ion from Francisella tularensis

2R5W | pdb_00002r5w

Crystal structure of a bifunctional NMN adenylyltransferase/ADP ribose pyrophosphatase from Francisella tularensis

3Q1Q | pdb_00003q1q

Structure of a Bacterial Ribonuclease P Holoenzyme in Complex with tRNA

4RPI | pdb_00004rpi

Crystal Structure of Nicotinate Mononucleotide Adenylyltransferase from Mycobacterium tuberculosis

5HM5 | pdb_00005hm5

Crystal structure of Topo-97, an N-terminal 97kDa fragment of topoisomerase V

8DF7 | pdb_00008df7

Structure of M. kandleri topoisomerase V in complex with DNA. 38 base pair symmetric DNA complex

8DF8 | pdb_00008df8

Structure of M. kandleri topoisomerase V in complex with DNA. 40 base pair symmetric DNA complex

8DF9 | pdb_00008df9

Structure of M. kandleri topoisomerase V in complex with DNA. 38 base pair asymmetric DNA complex

8DFB | pdb_00008dfb

Structure of M. kandleri topoisomerase V in complex with DNA. 39 base pair symmetric DNA complex

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1K4M | pdb_00001k4m

1OBR | pdb_00001obr

1YB0 | pdb_00001yb0

2AR3 | pdb_00002ar3

2QJO | pdb_00002qjo

2QJT | pdb_00002qjt

2R5W | pdb_00002r5w

3Q1Q | pdb_00003q1q

4RPI | pdb_00004rpi

5HM5 | pdb_00005hm5

8DF7 | pdb_00008df7

8DF8 | pdb_00008df8

8DF9 | pdb_00008df9

8DFB | pdb_00008dfb