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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Noguchi, H."

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Search Summary

This query matches 78 Structures.

Refinements

Structure Determination Methodology

experimental (78)

Scientific Name of Source Organism

	synthetic construct (56)
	Rattus norvegicus (4)
	Mammuthus primigenius (3)
	Mytilus galloprovincialis (2)
	Nanoarchaeum equitans Kin4-M (2)
	Aloe arborescens (1)
	Escherichia coli K-12 (1)
	Homo sapiens (1)
	Janthinobacterium sp. J3 (1)
	Metapseudomonas resinovorans (1)

Taxonomy

	other sequences (56)
	Eukaryota (11)
	Bacteria (3)
	Archaea (2)

Experimental Method

X-RAY DIFFRACTION (78)

Polymer Entity Type

Protein (78)

Refinement Resolution (Å)

	1.0 - 1.5 (26)
	1.5 - 2.0 (37)
	2.0 - 2.5 (11)
	2.5 - 3.0 (3)
	3.0 - 3.5 (1)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (12)
	2015 - 2019 (26)
	2020 - 2024 (37)

Enzyme Classification Name

	Hydrolases (5)
	Oxidoreductases (2)
	Transferases (2)
	Ligases (1)

Symmetry Type

	Asymmetric (56)
	Cyclic (21)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (6)
	All alpha proteins (3)
	Alpha and beta proteins (a+b) (2)
	Artifacts (2)
	All beta proteins (1)

AllSelected

1 to 25 of 78 Structures

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1VCK \| pdb_00001vck	Download File View File

Crystal structure of ferredoxin component of carbazole 1,9a-dioxygenase of Pseudomonas resinovorans strain CA10

Nam, J.-W., Noguchi, H., Fujiomoto, Z., Mizuno, H., Fushinobu, S., Kobashi, N., Iwata, K., Yoshida, T., Habe, H., Yamane, H., Omori, T., Nojiri, H.

(2005) Proteins 58: 779-789

Released	2005-03-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Metapseudomonas resinovorans
Macromolecule	ferredoxin component of carbazole (protein)
Unique Ligands	FE, FES, H2S

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1WW9 \| pdb_00001ww9	Download File View File

Crystal structure of the terminal oxygenase component of carbazole 1,9a-dioxygenase, a non-heme iron oxygenase system catalyzing the novel angular dioxygenation for carbazole and dioxin

Nojiri, H., Ashikawa, Y., Noguchi, H., Nam, J.-W., Urata, M., Fujimoto, Z., Mizuno, H., Yoshida, T., Habe, H., Omori, T.

(2005) J Mol Biology 351: 355-370

Released	2005-08-23
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Janthinobacterium sp. J3
Macromolecule	terminal oxygenase component of carbazole (protein)
Unique Ligands	FE2, FES

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2D3M \| pdb_00002d3m	Download File View File

Pentaketide chromone synthase complexed with coenzyme A

Morita, H., Kondo, S., Oguro, S., Noguchi, H., Sugio, S., Abe, I., Kohno, T.

(2007) Chem Biol 14: 359-369

Released	2006-10-24
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Aloe arborescens
Macromolecule	pentaketide chromone synthase (protein)
Unique Ligands	COA

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3VRE \| pdb_00003vre	Download File View File

The crystal structure of hemoglobin from woolly mammoth in the deoxy form

Noguchi, H., Campbell, K.L., Ho, C., Park, S.-Y., Tame, J.R.H.

(2012) Acta Crystallogr D Biol Crystallogr 68: 1441-1449

Released	2012-11-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mammuthus primigenius
Macromolecule	Hemoglobin subunit alpha (protein) Hemoglobin subunit beta/delta hybrid (protein)
Unique Ligands	HEM

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3VRF \| pdb_00003vrf	Download File View File

The crystal structure of hemoglobin from woolly mammoth in the carbonmonoxy forms

Noguchi, H., Campbell, K.L., Ho, C., Park, S.-Y., Tame, J.R.H.

(2012) Acta Crystallogr D Biol Crystallogr 68: 1441-1449

Released	2012-11-07
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Mammuthus primigenius
Macromolecule	Hemoglobin subunit alpha (protein) Hemoglobin subunit beta/delta hybrid (protein)
Unique Ligands	CMO, HEM

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3VRG \| pdb_00003vrg	Download File View File

The crystal structure of hemoglobin from woolly mammoth in the met form

Noguchi, H., Campbell, K.L., Ho, C., Park, S.-Y., Tame, J.R.H.

(2012) Acta Crystallogr D Biol Crystallogr 68: 1441-1449

Released	2012-11-07
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Mammuthus primigenius
Macromolecule	Hemoglobin subunit alpha (protein) Hemoglobin subunit beta/delta hybrid (protein)
Unique Ligands	HEM, SO4

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3VUS \| pdb_00003vus	Download File View File

Escherichia coli PgaB N-terminal domain

Nishiyama, T., Noguchi, H., Yoshida, H., Park, S.-Y., Tame, J.R.H.

(2013) Acta Crystallogr D Biol Crystallogr 69: 44-51

Released	2012-11-14
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Escherichia coli K-12
Macromolecule	Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase (protein)
Unique Ligands	ACT, HG, ZN

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3WMU \| pdb_00003wmu	Download File View File

The structure of an anti-cancer lectin mytilec apo-form from the mussel Mytilus galloprovincialis

Terada, D., Kawai, F., Noguchi, H., Unzai, S., Park, S.-Y., Ozeki, Y., Tame, J.R.H.

(2016) Sci Rep 6: 28344-28344

Released	2014-12-03
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Mytilus galloprovincialis
Macromolecule	Lectin (protein)
Unique Ligands	GOL

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3WMV \| pdb_00003wmv	Download File View File

The structure of an anti-cancer lectin mytilec with ligand from the mussel Mytilus galloprovincialis

Terada, D., Kawai, F., Noguchi, H., Unzai, S., Park, S.-Y., Ozeki, Y., Tame, J.R.H.

(2016) Sci Rep 6: 28344-28344

Released	2014-12-03
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Mytilus galloprovincialis
Macromolecule	Lectin (protein)
Unique Ligands	A2G

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3WW7 \| pdb_00003ww7	Download File View File

Crystal structure of the computationally designed Pizza2 protein

Voet, A.R.D., Noguchi, H., Addy, C., Simoncini, D., Terada, D., Unzai, S., Park, S.Y., Zhang, K.Y.J., Tame, J.R.H.

(2014) Proc Natl Acad Sci U S A 111: 15102-15107

Released	2014-10-08
Method	X-RAY DIFFRACTION 1.697 Å
Macromolecule	Pizza2 protein (protein)
Unique Ligands	GOL

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3WW8 \| pdb_00003ww8	Download File View File

Crystal structure of the computationally designed Pizza3 protein

Voet, A.R.D., Noguchi, H., Addy, C., Simoncini, D., Terada, D., Unzai, S., Park, S.Y., Zhang, K.Y.J., Tame, J.R.H.

(2014) Proc Natl Acad Sci U S A 111: 15102-15107

Released	2014-10-08
Method	X-RAY DIFFRACTION 1.402 Å
Macromolecule	Pizza3 protein (protein)
Unique Ligands	GOL, SO4

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3WW9 \| pdb_00003ww9	Download File View File

Crystal structure of the computationally designed Pizza6 protein

Voet, A.R.D., Noguchi, H., Addy, C., Simoncini, D., Terada, D., Unzai, S., Park, S.Y., Zhang, K.Y.J., Tame, J.R.H.

(2014) Proc Natl Acad Sci U S A 111: 15102-15107

Released	2014-10-08
Method	X-RAY DIFFRACTION 1.33 Å
Macromolecule	pizza6 protein (protein)
Unique Ligands	GOL, SO4

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3WWA \| pdb_00003wwa	Download File View File

Crystal structure of the computationally designed Pizza7 protein after heat treatment

Voet, A.R.D., Noguchi, H., Addy, C., Simoncini, D., Terada, D., Unzai, S., Park, S.Y., Zhang, K.Y.J., Tame, J.R.H.

(2014) Proc Natl Acad Sci U S A 111: 15102-15107

Released	2014-10-08
Method	X-RAY DIFFRACTION 1.988 Å
Macromolecule	Pizza7H protein (protein)
Unique Ligands	IPA

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3WWB \| pdb_00003wwb	Download File View File

Crystal structure of the computationally designed Pizza2-SR protein

Voet, A.R.D., Noguchi, H., Addy, C., Simoncini, D., Terada, D., Unzai, S., Park, S.Y., Zhang, K.Y.J., Tame, J.R.H.

(2014) Proc Natl Acad Sci U S A 111: 15102-15107

Released	2014-10-08
Method	X-RAY DIFFRACTION 1.7 Å
Macromolecule	Pizza2-SR protein (protein)

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3WWF \| pdb_00003wwf	Download File View File

Crystal structure of the computationally designed Pizza2-SR protein

Voet, A.R.D., Noguchi, H., Addy, C., Simoncini, D., Terada, D., Unzai, S., Park, S.Y., Zhang, K.Y.J., Tame, J.R.H.

(2014) Proc Natl Acad Sci U S A 111: 15102-15107

Released	2014-10-08
Method	X-RAY DIFFRACTION 1.601 Å
Macromolecule	pizza2sr-pb protein (protein)

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3X1W \| pdb_00003x1w	Download File View File

Ras-related protein Rap1B with GDP

Noguchi, H., Ikegami, T., Akashi, S., Park, S.Y., Tame, J.R.H., Unzai, S.

(2015) Biochem Biophys Res Commun 462: 46-51

Released	2015-06-03
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Rattus norvegicus
Macromolecule	Ras-related protein Rap-1b (protein)
Unique Ligands	CD, GDP, MG

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3X1X \| pdb_00003x1x	Download File View File

Ras-related protein Rap1B with GppNHp

Noguchi, H., Ikegami, T., Park, S.Y., Tame, J.R.H., Unzai, S.

(2015) Biochem Biophys Res Commun 462: 46-51

Released	2015-06-03
Method	X-RAY DIFFRACTION 1 Å
Organisms	Rattus norvegicus
Macromolecule	Ras-related protein Rap-1b (protein)
Unique Ligands	CD, GNP, MG

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3X1Y \| pdb_00003x1y	Download File View File

Ras-related protein Rap1B(L9V) with GppNHp

Noguchi, H., Ikegami, T., Park, S.Y., Tame, J.R.H., Unzai, S.

(2015) Biochem Biophys Res Commun 462: 46-51

Released	2015-06-03
Method	X-RAY DIFFRACTION 1.168 Å
Organisms	Rattus norvegicus
Macromolecule	Ras-related protein Rap-1b (protein)
Unique Ligands	CD, GNP, GOL, MG

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3X1Z \| pdb_00003x1z	Download File View File

Ras-related protein Rap1B(T65A) with GppNHp

Noguchi, H., Ikegami, T., Park, S.Y., Tame, J.R.H., Unzai, S.

(2015) Biochem Biophys Res Commun 462: 46-51

Released	2015-06-03
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Rattus norvegicus
Macromolecule	Ras-related protein Rap-1b (protein)
Unique Ligands	GNP, GOL, MG

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4ZCN \| pdb_00004zcn	Download File View File

Crystal structure of nvPizza2-S16S58

Voet, A.R.D., Noguchi, H., Addy, C., Zhang, K.Y.J., Tame, J.R.H.

To be published

Released	2015-07-01
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	synthetic construct
Macromolecule	nvPizza2-S16S58 (protein)
Unique Ligands	IOD, SO4

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5CHB \| pdb_00005chb	Download File View File

Crystal structure of nvPizza2-S16H58 coordinating a CdCl2 nanocrystal

Voet, A.R.D., Noguchi, H., Addy, C., Zhang, K.Y.J., Tame, J.R.H.

(2015) Angew Chem Int Ed Engl 54: 9857-9860

Released	2015-07-22
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	synthetic construct
Macromolecule	nvPizza2-S16H58 (protein)
Unique Ligands	CD, CL, SO4

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5NSD \| pdb_00005nsd	Download File View File

Co-crystal structure of NAMPT dimer with KPT-9274

Neggers, J.E., Kwanten, B., Dierckx, T., Noguchi, H., Voet, A., Vercruysse, T., Baloglu, E., Senapedis, W., Jacquemyn, M., Daelemans, D.

(2018) Nat Commun 9: 502-502

Released	2018-02-14
Method	X-RAY DIFFRACTION 2.046 Å
Organisms	Homo sapiens
Macromolecule	Nicotinamide phosphoribosyltransferase (protein)
Unique Ligands	96Q, GOL, PO4