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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Lyu, P.C."

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Search Summary

This query matches 40 Structures.

Refinements

Structure Determination Methodology

experimental (40)

Scientific Name of Source Organism

	Drosophila melanogaster (18)
	Homo sapiens (10)
	Escherichia coli K-12 (4)
	Rhizopus arrhizus (2)
	Vigna radiata (2)
	Gallus gallus (1)
	Haemophilus influenzae Rd KW20 (1)
	Scylla olivacea (1)
	Vigna radiata var. radiata (1)

Taxonomy

	Eukaryota (35)
	Bacteria (5)

Experimental Method

	X-RAY DIFFRACTION (34)
	SOLUTION NMR (6)

Polymer Entity Type

Protein (40)

Refinement Resolution (Å)

	1.0 - 1.5 (13)
	1.5 - 2.0 (17)
	2.0 - 2.5 (4)

Release Date

	2005 - 2009 (4)
	2010 - 2014 (4)
	2015 - 2019 (12)
	2020 - 2024 (20)

Enzyme Classification Name

	Transferases (22)
	Hydrolases (13)

Membrane Protein Annotation

OPM (2)

Symmetry Type

	Asymmetric (33)
	Cyclic (7)

SCOP Classification

	Alpha and beta proteins (a/b) (6)
	Artifacts (6)
	All alpha proteins (1)
	All beta proteins (1)
	Small proteins (1)

AllSelected

1 to 25 of 40 Structures

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1SIY \| pdb_00001siy	Download File View File

NMR structure of mung bean non-specific lipid transfer protein 1

Lin, K.F., Liu, Y.N., Hsu, S.T.D., Samuel, D., Cheng, C.S., Bonvin, A.M.J.J., Lyu, P.C.

(2005) Biochemistry 44: 5703-5712

Released	2005-04-05
Method	SOLUTION NMR
Organisms	Vigna radiata var. radiata
Macromolecule	Nonspecific lipid-transfer protein 1 (protein)

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1TI5 \| pdb_00001ti5	Download File View File

Solution structure of plant defensin

Liu, Y.J., Cheng, C.S., Liu, Y.N., Hsu, M.P., Chen, C.S., Lyu, P.C.

(2006) Proteins 63: 777-786

Released	2005-07-26
Method	SOLUTION NMR
Organisms	Vigna radiata
Macromolecule	plant defensin (protein)

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2DJM \| pdb_00002djm	Download File View File

Solution structure of N-terminal starch-binding domain of glucoamylase from Rhizopus oryzae

Liu, Y.N., Lai, Y.T., Lyu, P.C.

(2007) Biochem J 403: 21-30

Released	2007-03-27
Method	SOLUTION NMR
Organisms	Rhizopus arrhizus
Macromolecule	glucoamylase A (protein)

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2GL1 \| pdb_00002gl1	Download File View File

NMR solution structure of Vigna radiata Defensin 2 (VrD2)

Lin, K.F., Lee, T.R., Tsai, P.H., Hsu, M.P., Chen, C.S., Lyu, P.C.

(2007) Proteins 68: 530-540

Released	2007-04-03
Method	SOLUTION NMR
Organisms	Vigna radiata
Macromolecule	PDF1 (protein)

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2L95 \| pdb_00002l95	Download File View File

Solution Structure of Cytotoxic T-Lymphocyte Antigent-2(Ctla protein), Crammer at pH 6.0

Tseng, T.S., Cheng, C.S., Liu, Y.N., Lyu, P.C.

(2012) Biochem J 442: 563-572

Released	2011-12-21
Method	SOLUTION NMR
Organisms	Drosophila melanogaster
Macromolecule	Crammer (protein)

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2WRY \| pdb_00002wry	Download File View File

Crystal structure of chicken cytokine interleukin 1 beta

Lu, W.S., Cheng, C.S., Lyu, P.C., Lee, L.H., Wang, W.C., Yin, H.S.

(2011) Mol Immunol 48: 947

Released	2010-09-29
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Gallus gallus
Macromolecule	INTERLEUKIN-1BETA (protein)

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3TE4 \| pdb_00003te4	Download File View File

Crystal structure of dopamine N Acetyltransferase in complex with acetyl-COA from Drosophila Melanogaster

Cheng, K.C., Huang, S.H., Lyu, P.C.

(2012) Biochem J 446: 395-404

Released	2012-07-11
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	Drosophila melanogaster
Macromolecule	Dopamine N acetyltransferase, isoform A (protein)
Unique Ligands	ACO

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4EIB \| pdb_00004eib	Download File View File

Crystal Structure of Circular Permuted CBM21 (CP90) Gives Insight into the Altered Selectivity on Carbohydrate Binding.

Stephen, P., Cheng, K.C., Lyu, P.C.

(2012) PLoS One 7: e50488-e50488

Released	2012-12-12
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Rhizopus arrhizus
Macromolecule	Glucoamylase (protein)
Unique Ligands	ACT, CL, NA, NH4, SO4

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5GI5 \| pdb_00005gi5	Download File View File

Crystal Structure of Drosophila melanogaster Dopamine N-Acetyltransferase Bound to CoA

Yang, Y.C., Cheng, H.C., Lyu, P.C.

(2020) Commun Biol 3: 441-441

Released	2017-07-05
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Drosophila melanogaster
Macromolecule	Dopamine N-acetyltransferase (protein)
Unique Ligands	COA, IMD

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5GI6 \| pdb_00005gi6	Download File View File

Crystal Structure of Drosophila melanogaster Dopamine N-Acetyltransferase Bound to CoA and Phenylethylamine

Yang, Y.C., Cheng, H.C., Lyu, P.C.

To be published

Released	2017-07-05
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Drosophila melanogaster
Macromolecule	Dopamine N-acetyltransferase (protein)
Unique Ligands	COA, PEA

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5GI7 \| pdb_00005gi7	Download File View File

Crystal Structure of Drosophila melanogaster Dopamine N-Acetyltransferase in Ternary Complex with CoA and Acetyl-phenylethylamine

Yang, Y.C., Lin, S.J., Cheng, K.C., Cheng, H.C., Lyu, P.C.

(2020) Commun Biol 3: 441-441

Released	2017-07-05
Method	X-RAY DIFFRACTION 1.201 Å
Organisms	Drosophila melanogaster
Macromolecule	Dopamine N-acetyltransferase (protein)
Unique Ligands	54W, COA, D1D

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5GI8 \| pdb_00005gi8	Download File View File

Crystal Structure of Drosophila melanogaster Dopamine N-Acetyltransferase in Ternary Complex with CoA and Acetyl-dopamine

Yang, Y.C., Lin, S.J., Cheng, K.C., Cheng, H.C., Lyu, P.C.

To be published

Released	2017-07-05
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Drosophila melanogaster
Macromolecule	Dopamine N-acetyltransferase (protein)
Unique Ligands	7DP, COA, D1D

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5GI9 \| pdb_00005gi9	Download File View File

Crystal Structure of Drosophila melanogaster Dopamine N-Acetyltransferase in Ternary Complex with CoA and Acetyl-Tryptamine

Yang, Y.C., Lin, S.J., Cheng, K.C., Cheng, H.C., Lyu, P.C.

(2020) Commun Biol 3: 441-441

Released	2017-07-05
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Drosophila melanogaster
Macromolecule	Dopamine N-acetyltransferase (protein)
Unique Ligands	7AN, COA, D1D

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5GIF \| pdb_00005gif	Download File View File

Crystal Structure of Drosophila melanogaster E47D Dopamine N-Acetyltransferase in Binary Complex with Acetyl-CoA

Yang, Y.C., Wu, C.Y., Cheng, H.C., Lyu, P.C.

To be published

Released	2017-07-05
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Drosophila melanogaster
Macromolecule	Dopamine N-acetyltransferase (protein)
Unique Ligands	ACO, D1D

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5GIG \| pdb_00005gig	Download File View File

Crystal Structure of Drosophila melanogaster E47D Dopamine N-Acetyltransferase in Ternary Complex with CoA and Acetyl-dopamine

Yang, Y.C., Wu, C.Y., Cheng, H.C., Lyu, P.C.

To be published

Released	2017-07-05
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Drosophila melanogaster
Macromolecule	Dopamine N-acetyltransferase (protein)
Unique Ligands	7DP, COA, D1D

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5GIH \| pdb_00005gih	Download File View File

Crystal Structure of Drosophila melanogaster E47D Dopamine N-Acetyltransferase in Ternary Complex with CoA and Acetyl-phenylethylamine

Yang, Y.C., Wu, C.Y., Cheng, H.C., Lyu, P.C.

To be published

Released	2017-07-05
Method	X-RAY DIFFRACTION 1.392 Å
Organisms	Drosophila melanogaster
Macromolecule	Dopamine N-acetyltransferase (protein)
Unique Ligands	54W, COA

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5GII \| pdb_00005gii	Download File View File

Crystal Structure of Drosophila melanogaster E47N Dopamine N-Acetyltransferase in Ternary Complex with CoA and Acetyl-phenylethylamine

Yang, Y.C., Wu, C.Y., Cheng, H.C., Lyu, P.C.

To be published

Released	2017-07-05
Method	X-RAY DIFFRACTION 1.294 Å
Organisms	Drosophila melanogaster
Macromolecule	Dopamine N-acetyltransferase (protein)
Unique Ligands	54W, COA

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5XS1 \| pdb_00005xs1	Download File View File

Solution structure of Crustacean Hyperglycemic Hormone-like (CHH-L) from the Scylla Olivacea

Chen, Y.R., Lyu, P.C.

To be published

Released	2018-06-13
Method	SOLUTION NMR
Organisms	Scylla olivacea
Macromolecule	Hyperglycemic hormone-like peptide (protein)

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5ZYO \| pdb_00005zyo	Download File View File

Crystal Structure of domain-swapped Circular-Permuted YbeA (CP74) from Escherichia coli

Ko, K.T., Huang, K.F., Lyu, P.C., Hsu, S.T.D.

(2019) Structure 27: 1224-1233.e4

Released	2019-05-29
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Escherichia coli K-12
Macromolecule	Ribosomal RNA large subunit methyltransferase H (protein)

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6AHW \| pdb_00006ahw	Download File View File

Crystal structure of circular-permutated YibK methyltransferase from Haemophilus influenzae

Chuang, Y.C., Lyu, P.C., Hsu, S.T.D.

(2019) J Mol Biology 431: 857-863

Released	2019-01-23
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Haemophilus influenzae Rd KW20
Macromolecule	circular-permutated tRNA (cytidine(34)-2'-O)-methyltransferase (protein)

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6K80 \| pdb_00006k80	Download File View File

Crystal Structure of Drosophila melanogaster Dopamine N-Acetyltransferase in Complex with CoA and Tryptophol

Wu, C.Y., Hu, I.C., Yang, Y.C., Cheng, H.C., Lyu, P.C.

(2020) Commun Biol 3: 441-441

Released	2020-06-17
Method	X-RAY DIFFRACTION 1.28 Å
Organisms	Drosophila melanogaster
Macromolecule	Dopamine N-acetyltransferase (protein)
Unique Ligands	ACO, ZCW

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6L1S \| pdb_00006l1s	Download File View File

Crystal structure of DUSP22 mutant_C88S

Lai, C.H., Chang, C.C., Lyu, P.C.

(2020) Int J Mol Sci 21:

Released	2020-10-28
Method	X-RAY DIFFRACTION 1.3611 Å
Organisms	Homo sapiens
Macromolecule	Dual specificity protein phosphatase 22 (protein)
Unique Ligands	PO4

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6LMY \| pdb_00006lmy	Download File View File

Crystal structure of DUSP22 mutant_C88S/S93A

Lai, C.H., Lyu, P.C.

(2020) Int J Mol Sci 21:

Released	2020-10-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Dual specificity protein phosphatase 22 (protein)
Unique Ligands	PO4

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6LOT \| pdb_00006lot	Download File View File

Crystal structure of DUSP22 mutant_N128D

Lai, C.H., Lyu, P.C.

(2020) Int J Mol Sci 21:

Released	2020-10-28
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Homo sapiens
Macromolecule	Dual specificity protein phosphatase 22 (protein)
Unique Ligands	SO4

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6LOU \| pdb_00006lou	Download File View File

Crystal structure of DUSP22 mutant_C88S/S93N

Lai, C.H., Lyu, P.C.

(2020) Int J Mol Sci 21:

Released	2020-10-28
Method	X-RAY DIFFRACTION 1.5301 Å
Organisms	Homo sapiens
Macromolecule	Dual specificity protein phosphatase 22 (protein)
Unique Ligands	PO4

1 to 25 of 40 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1SIY | pdb_00001siy

1TI5 | pdb_00001ti5

2DJM | pdb_00002djm

2GL1 | pdb_00002gl1

2L95 | pdb_00002l95

2WRY | pdb_00002wry

3TE4 | pdb_00003te4

4EIB | pdb_00004eib

5GI5 | pdb_00005gi5

5GI6 | pdb_00005gi6

5GI7 | pdb_00005gi7

5GI8 | pdb_00005gi8

5GI9 | pdb_00005gi9

5GIF | pdb_00005gif

5GIG | pdb_00005gig

5GIH | pdb_00005gih

5GII | pdb_00005gii

5XS1 | pdb_00005xs1

5ZYO | pdb_00005zyo

6AHW | pdb_00006ahw

6K80 | pdb_00006k80

6L1S | pdb_00006l1s

6LMY | pdb_00006lmy

6LOT | pdb_00006lot

6LOU | pdb_00006lou