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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Lutters, M.A.G."

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Search Summary

This query matches 52 Structures.

Refinements

Structure Determination Methodology

experimental (52)

Scientific Name of Source Organism

	Severe acute respiratory syndrome coronavirus 2 (37)
	Homo sapiens (24)
	Escherichia coli K-12 (3)
	Haemophilus influenzae Rd KW20 (1)
	Saccharomyces cerevisiae (1)
	Ureaplasma parvum serovar 3 str. ATCC 700970 (1)
	Vigna radiata var. radiata (1)

Taxonomy

	Riboviria (37)
	Eukaryota (25)
	Bacteria (5)

Experimental Method

	ELECTRON MICROSCOPY (45)
	X-RAY DIFFRACTION (5)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (52)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (2)
	2.5 - 3.0 (16)
	3.0 - 3.5 (24)
	3.5 - 4.0 (6)

Release Date

	2005 - 2009 (1)
	2020 - 2024 (46)
	2025 - 2029 (5)

Enzyme Classification Name

	Hydrolases (17)
	Transferases (4)

Symmetry Type

	Asymmetric (35)
	Cyclic (13)
	Dihedral (3)
	Helical (1)

SCOP Classification

All alpha proteins (1)

AllSelected

1 to 25 of 52 Structures

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1SIY \| pdb_00001siy	Download File View File

NMR structure of mung bean non-specific lipid transfer protein 1

Lin, K.F., Liu, Y.N., Hsu, S.T.D., Samuel, D., Cheng, C.S., Bonvin, A.M.J.J., Lyu, P.C.

(2005) Biochemistry 44: 5703-5712

Released	2005-04-05
Method	SOLUTION NMR
Organisms	Vigna radiata var. radiata
Macromolecule	Nonspecific lipid-transfer protein 1 (protein)

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7CEM \| pdb_00007cem	Download File View File

Crystal Structure of YbeA CP74 W7F

Liu, C.Y., Wu, C.Y., Lai, C.H., Hsu, S.T.D., Lyu, P.C.

To be published

Released	2021-06-23
Method	X-RAY DIFFRACTION 2.4251 Å
Organisms	Escherichia coli K-12
Macromolecule	Ribosomal RNA large subunit methyltransferase H,Ribosomal RNA large subunit methyltransferase H (protein)

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7CF7 \| pdb_00007cf7	Download File View File

Crystal Structure of YbeA CP74 W72F

Liu, C.Y., Lai, C.H., Hsu, S.T.D., Lyu, P.C.

To be published

Released	2021-06-30
Method	X-RAY DIFFRACTION 1.6178 Å
Organisms	Escherichia coli K-12
Macromolecule	Ribosomal RNA large subunit methyltransferase H,Ribosomal RNA large subunit methyltransferase H (protein)

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7CFY \| pdb_00007cfy	Download File View File

Crystal Structure of YbeA CP74 W48F

Liu, C.Y., Lai, C.H., Hsu, S.T.D., Lyu, P.C.

To be published

Released	2021-06-30
Method	X-RAY DIFFRACTION 2.4051 Å
Organisms	Escherichia coli K-12
Macromolecule	Ribosomal RNA large subunit methyltransferase H,Ribosomal RNA large subunit methyltransferase H (protein)

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7D51 \| pdb_00007d51	Download File View File

Crystal structure of a truly knotted protein: cyclized YibK from Haemophilus influenzae

Sriramoju, M.K., Ko, K.T., Hsu, S.T.D.

To be published

Released	2021-09-29
Method	X-RAY DIFFRACTION 2.68 Å
Organisms	Haemophilus influenzae Rd KW20
Macromolecule	tRNA (cytidine(34)-2'-O)-methyltransferase (protein)

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7EJ4 \| pdb_00007ej4	Download File View File

Cryo-EM structure of SARS-CoV-2 spike in complex with a neutralizing antibody RBD-chAb-25

Yang, T.J., Yu, P.Y., Wu, H.C., Hsu, S.T.D.

To be published

Released	2021-06-23
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	RBD-chAb-25, Heavy chain (protein) RBD-chAb-25, Light chain (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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7EJ5 \| pdb_00007ej5	Download File View File

Cryo-EM structure of SARS-CoV-2 spike in complex with a neutralizing antibody RBD-chAb-45

Yang, T.J., Yu, P.Y., Wu, H.C., Hsu, S.T.D.

To be published

Released	2021-06-23
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	RBD-chAb45, Heavy chain (protein) RBD-chAb45, Light chain (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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7V76 \| pdb_00007v76	Download File View File

Cryo-EM structure of SARS-CoV-2 S-Beta variant (B.1.351), uncleavable form, one RBD-up conformation

Yang, T.J., Yu, P.Y., Chang, Y.C., Hsu, S.T.D.

To be published

Released	2021-10-06
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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7V77 \| pdb_00007v77	Download File View File

Cryo-EM structure of SARS-CoV-2 S-Beta variant (B.1.351), uncleavable form, two RBD-up conformation

Yang, T.J., Yu, P.Y., Chang, Y.C., Hsu, S.T.D.

To be published

Released	2021-10-06
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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7V78 \| pdb_00007v78	Download File View File

Cryo-EM structure of SARS-CoV-2 S-Gamma variant (P.1), one RBD-up conformation 1

Yang, T.J., Yu, P.Y., Chang, Y.C., Hsu, S.T.D.

To be published

Released	2021-10-06
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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7V79 \| pdb_00007v79	Download File View File

Cryo-EM structure of SARS-CoV-2 S-Gamma variant (P.1), one RBD-up conformation 2

Yang, T.J., Yu, P.Y., Chang, Y.C., Hsu, S.T.D.

To be published

Released	2021-10-06
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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7V7A \| pdb_00007v7a	Download File View File

Cryo-EM structure of SARS-CoV-2 S-Gamma variant (P.1), two RBD-up conformation

Yang, T.J., Yu, P.Y., Chang, Y.C., Hsu, S.T.D.

To be published

Released	2021-10-06
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

Explore in 3D

7V7D \| pdb_00007v7d	Download File View File

Cryo-EM structure of SARS-CoV-2 S-Kappa variant (B.1.617.1), all RBD-down conformation

Yang, T.J., Yu, P.Y., Chang, Y.C., Hsu, S.T.D.

To be published

Released	2021-10-06
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

Explore in 3D

7V7E \| pdb_00007v7e	Download File View File

Cryo-EM structure of SARS-CoV-2 S-Kappa variant (B.1.617.1), one RBD-up conformation 1

Yang, T.J., Yu, P.Y., Chang, Y.C., Hsu, S.T.D.

To be published

Released	2021-10-06
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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7V7F \| pdb_00007v7f	Download File View File

Cryo-EM structure of SARS-CoV-2 S-Kappa variant (B.1.617.1), one RBD-up conformation 2

Yang, T.J., Yu, P.Y., Chang, Y.C., Hsu, S.T.D.

To be published

Released	2021-10-06
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

Explore in 3D

7V7G \| pdb_00007v7g	Download File View File

Cryo-EM structure of SARS-CoV-2 S-Kappa variant (B.1.617.1), two RBD-up conformation

Yang, T.J., Yu, P.Y., Chang, Y.C., Hsu, S.T.D.

To be published

Released	2021-10-06
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

Explore in 3D

7V7H \| pdb_00007v7h	Download File View File

Cryo-EM structure of SARS-CoV-2 S-Kappa variant (B.1.617.1), dimer of S trimer conformation 1

Yang, T.J., Yu, P.Y., Chang, Y.C., Hsu, S.T.D.

To be published

Released	2021-10-06
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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7V7I \| pdb_00007v7i	Download File View File

Cryo-EM structure of SARS-CoV-2 S-Kappa variant (B.1.617.1), dimer of S trimer conformation 2

Yang, T.J., Yu, P.Y., Chang, Y.C., Hsu, S.T.D.

To be published

Released	2021-10-06
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

Explore in 3D

7V7J \| pdb_00007v7j	Download File View File

Cryo-EM structure of SARS-CoV-2 S-Kappa variant (B.1.617.1), dimer of S trimer conformation 3

Yang, T.J., Yu, P.Y., Chang, Y.C., Hsu, S.T.D.

To be published

Released	2021-10-06
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

Explore in 3D

7V7N \| pdb_00007v7n	Download File View File

Cryo-EM structure of SARS-CoV-2 S-Delta variant (B.1.617.2), all RBD-down conformation

Yang, T.J., Yu, P.Y., Chang, Y.C., Hsu, S.T.D.

To be published

Released	2021-10-06
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

Explore in 3D

7V7O \| pdb_00007v7o	Download File View File

Cryo-EM structure of SARS-CoV-2 S-Delta variant (B.1.617.2), one RBD-up conformation 1

Yang, T.J., Yu, P.Y., Chang, Y.C., Hsu, S.T.D.

To be published

Released	2021-10-06
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

Explore in 3D

7V7P \| pdb_00007v7p	Download File View File

Cryo-EM structure of SARS-CoV-2 S-Delta variant (B.1.617.2), one RBD-up conformation 2

Yang, T.J., Yu, P.Y., Chang, Y.C., Hsu, S.T.D.

To be published

Released	2021-10-06
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

Explore in 3D

7V7Q \| pdb_00007v7q	Download File View File

Cryo-EM structure of SARS-CoV-2 S-Delta variant (B.1.617.2), one RBD-up conformation 3

Yang, T.J., Yu, P.Y., Chang, Y.C., Hsu, S.T.D.

To be published

Released	2021-10-06
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

Explore in 3D

7V7R \| pdb_00007v7r	Download File View File

Cryo-EM structure of SARS-CoV-2 S-Delta variant (B.1.617.2), one RBD-up conformation 4

Yang, T.J., Yu, P.Y., Chang, Y.C., Hsu, S.T.D.

To be published

Released	2021-10-06
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

Explore in 3D

7V7S \| pdb_00007v7s	Download File View File

Cryo-EM structure of SARS-CoV-2 S-Delta variant (B.1.617.2), one RBD-up conformation 5

Yang, T.J., Yu, P.Y., Chang, Y.C., Hsu, S.T.D.

To be published

Released	2021-10-06
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

1 to 25 of 52 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1SIY | pdb_00001siy

7CEM | pdb_00007cem

7CF7 | pdb_00007cf7

7CFY | pdb_00007cfy

7D51 | pdb_00007d51

7EJ4 | pdb_00007ej4

7EJ5 | pdb_00007ej5

7V76 | pdb_00007v76

7V77 | pdb_00007v77

7V78 | pdb_00007v78

7V79 | pdb_00007v79

7V7A | pdb_00007v7a

7V7D | pdb_00007v7d

7V7E | pdb_00007v7e

7V7F | pdb_00007v7f

7V7G | pdb_00007v7g

7V7H | pdb_00007v7h

7V7I | pdb_00007v7i

7V7J | pdb_00007v7j

7V7N | pdb_00007v7n

7V7O | pdb_00007v7o

7V7P | pdb_00007v7p

7V7Q | pdb_00007v7q

7V7R | pdb_00007v7r

7V7S | pdb_00007v7s