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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Levy, C.W."

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Search Summary

This query matches 74 Structures.

Refinements

Structure Determination Methodology

experimental (74)

Scientific Name of Source Organism

	Pseudomonas fluorescens (8)
	Acetoanaerobium sticklandii (6)
	Homo sapiens (6)
	Enterobacter cloacae (5)
	Mycobacterium tuberculosis CDC1551 (5)
	Pyrococcus horikoshii (5)
	Pseudomonas putida (4)
	synthetic construct (4)
	Coptis japonica (3)
	Priestia megaterium (3)

More...

Taxonomy

	Bacteria (49)
	Eukaryota (12)
	Archaea (6)
	other sequences (4)
	Varidnaviria (2)
	Duplodnaviria (1)

Experimental Method

X-RAY DIFFRACTION (74)

Polymer Entity Type

Protein (74)

Refinement Resolution (Å)

	1.0 - 1.5 (10)
	1.5 - 2.0 (36)
	2.0 - 2.5 (21)
	2.5 - 3.0 (7)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (2)
	2005 - 2009 (2)
	2010 - 2014 (15)
	2015 - 2019 (42)
	2020 - 2024 (12)

Enzyme Classification Name

	Oxidoreductases (22)
	Isomerases (6)
	Transferases (7)
	Lyases (6)
	Hydrolases (1)
	Ligases (1)

Symmetry Type

	Asymmetric (53)
	Cyclic (26)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (21)
	All alpha proteins (14)
	Alpha and beta proteins (a+b) (2)
	Artifacts (2)
	Multi-domain proteins (alpha and beta) (2)
	All beta proteins (1)

AllSelected

1 to 25 of 74 Structures

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1D8A \| pdb_00001d8a	Download File View File

E. COLI ENOYL REDUCTASE/NAD+/TRICLOSAN COMPLEX

Levy, C.W., Roujeinikova, A., Sedelnikova, S., Baker, P.J., Stuitje, A.R., Slabas, A.R., Rice, D.W., Rafferty, J.B.

(1999) Nature 398: 383-384

Released	1999-10-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE (protein)
Unique Ligands	NAD, TCL

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1KKO \| pdb_00001kko	Download File View File

CRYSTAL STRUCTURE OF CITROBACTER AMALONATICUS METHYLASPARTATE AMMONIA LYASE

Levy, C.W., Buckley, P.A., Sedelnikova, S., Kato, Y., Asano, Y., Rice, D.W., Baker, P.J.

(2002) Structure 10: 105-113

Released	2002-01-30
Method	X-RAY DIFFRACTION 1.33 Å
Organisms	Citrobacter amalonaticus
Macromolecule	3-METHYLASPARTATE AMMONIA-LYASE (protein)
Unique Ligands	SO4

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1KKR \| pdb_00001kkr	Download File View File

CRYSTAL STRUCTURE OF CITROBACTER AMALONATICUS METHYLASPARTATE AMMONIA LYASE CONTAINING (2S,3S)-3-METHYLASPARTIC ACID

Levy, C.W., Buckley, P.A., Sedelnikova, S., Kato, K., Asano, Y., Rice, D.W., Baker, P.J.

(2002) Structure 10: 105-113

Released	2002-01-30
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Citrobacter amalonaticus
Macromolecule	3-METHYLASPARTATE AMMONIA-LYASE (protein)
Unique Ligands	2AS, MG

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2XKR \| pdb_00002xkr	Download File View File

Crystal Structure of Mycobacterium tuberculosis CYP142: A novel cholesterol oxidase

Driscoll, M., McLean, K.J., Levy, C.W., Lafite, P., Mast, N., Pikuleva, I.A., Rigby, S.E.J., Leys, D., Munro, A.W.

(2010) J Biological Chem 285: 38270

Released	2010-09-29
Method	X-RAY DIFFRACTION 1.601 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	PUTATIVE CYTOCHROME P450 142 (protein)
Unique Ligands	HEM, PG4

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3K8D \| pdb_00003k8d	Download File View File

Crystal structure of E. coli lipopolysaccharide specific CMP-KDO synthetase in complex with CTP and 2-deoxy-Kdo

Heyes, D.J., Levy, C.W., Lafite, P., Scrutton, N.S., Leys, D.

(2009) J Biological Chem 284: 35514-35523

Released	2009-11-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	3-deoxy-manno-octulosonate cytidylyltransferase (protein)
Unique Ligands	CTP, KDO, MG

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3K8E \| pdb_00003k8e	Download File View File

Crystal structure of E. coli lipopolysaccharide specific CMP-KDO synthetase

Heyes, D.J., Levy, C.W., Lafite, P., Scrutton, N.S., Leys, D.

(2009) J Biological Chem 284: 35514-35523

Released	2009-11-10
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Escherichia coli K-12
Macromolecule	3-deoxy-manno-octulosonate cytidylyltransferase (protein)

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3KFT \| pdb_00003kft	Download File View File

Crystal structure of Pentaerythritol Tetranitrate Reductase complex with 1,4,5,6-tetrahydro NADH

Pudney, C.R., Levy, C.W., Leys, D., Scrutton, N.S.

(2009) J Am Chem Soc 131: 17072-17073

Released	2010-02-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Enterobacter cloacae
Macromolecule	Pentaerythritol tetranitrate reductase (protein)
Unique Ligands	FMN, NAD

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3KOW \| pdb_00003kow	Download File View File

Crystal Structure of ornithine 4,5 aminomutase backsoaked complex

Wolthers, K.R., Levy, C.W., Scrutton, N.S., Leys, D.

(2010) J Biological Chem 285: 13942-13950

Released	2010-01-26
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Acetoanaerobium sticklandii
Macromolecule	D-ornithine aminomutase E component (protein) D-ornithine aminomutase S component (protein)
Unique Ligands	5AD, B12, PLP

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3KOX \| pdb_00003kox	Download File View File

Crystal Structure of ornithine 4,5 aminomutase in complex with 2,4-diaminobutyrate (Anaerobic)

Wolthers, K.R., Levy, C.W., Scrutton, N.S., Leys, D.

(2010) J Biological Chem 285: 13942-13950

Released	2010-01-26
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Acetoanaerobium sticklandii
Macromolecule	D-ornithine aminomutase E component (protein) D-ornithine aminomutase S component (protein)
Unique Ligands	5AD, B12, Z98

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3KOY \| pdb_00003koy	Download File View File

Crystal Structure of ornithine 4,5 aminomutase in complex with ornithine (Aerobic)

Wolthers, K.R., Levy, C.W., Scrutton, N.S., Leys, D.

(2010) J Biological Chem 285: 13942-13950

Released	2010-01-26
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Acetoanaerobium sticklandii
Macromolecule	D-ornithine aminomutase E component (protein) D-ornithine aminomutase S component (protein)
Unique Ligands	5AD, B12, Z97

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3KOZ \| pdb_00003koz	Download File View File

Crystal Structure of ornithine 4,5 aminomutase in complex with ornithine (Anaerobic)

Wolthers, K.R., Levy, C.W., Scrutton, N.S., Leys, D.

(2010) J Biological Chem 285: 13942-13950

Released	2010-01-26
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Acetoanaerobium sticklandii
Macromolecule	D-ornithine aminomutase E component (protein) D-ornithine aminomutase S component (protein)
Unique Ligands	5AD, B12, Z97

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3KP0 \| pdb_00003kp0	Download File View File

Crystal Structure of ORNITHINE 4,5 AMINOMUTASE in complex with 2,4-diaminobutyrate (DAB) (Aerobic)

Wolthers, K.R., Levy, C.W., Scrutton, N.S., Leys, D.

(2010) J Biological Chem 285: 13942-13950

Released	2010-01-26
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Acetoanaerobium sticklandii
Macromolecule	D-ornithine aminomutase E component (protein) D-ornithine aminomutase S component (protein)
Unique Ligands	5AD, B12, Z98

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3KP1 \| pdb_00003kp1	Download File View File

Crystal structure of ornithine 4,5 aminomutase (Resting State)

Wolthers, K.R., Levy, C.W., Scrutton, N.S., Leys, D.

(2010) J Biological Chem 285: 13942-13950

Released	2010-01-26
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Acetoanaerobium sticklandii
Macromolecule	D-ornithine aminomutase E component (protein) D-ornithine aminomutase S component (protein)
Unique Ligands	5AD, B12, PLP

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3KX3 \| pdb_00003kx3	Download File View File

Crystal structure of Bacillus megaterium BM3 heme domain mutant L86E

Girvan, H.M., Levy, C.W., Leys, D., Munro, A.W.

(2010) Biochem J 427: 455-466

Released	2010-05-19
Method	X-RAY DIFFRACTION 1.803 Å
Organisms	Priestia megaterium
Macromolecule	Bifunctional P-450/NADPH-P450 reductase (protein)
Unique Ligands	140, HEM

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3KX4 \| pdb_00003kx4	Download File View File

Crystal structure of Bacillus megaterium BM3 heme domain mutant I401E

Girvan, H.M., Levy, C.W., Leys, D., Munro, A.W.

(2010) Biochem J 427: 455-466

Released	2010-05-19
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Priestia megaterium
Macromolecule	Bifunctional P-450/NADPH-P450 reductase (protein)
Unique Ligands	HEM

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3KX5 \| pdb_00003kx5	Download File View File

Crystal structure of Bacillus megaterium BM3 heme domain mutant F261E

Girvan, H.M., Levy, C.W., Leys, D., Munro, A.W.

(2010) Biochem J 427: 455-466

Released	2010-05-19
Method	X-RAY DIFFRACTION 1.686 Å
Organisms	Priestia megaterium
Macromolecule	Bifunctional P-450/NADPH-P450 reductase (protein)
Unique Ligands	HEM, SO4

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4H1S \| pdb_00004h1s	Download File View File

Crystal Structure of a Truncated Soluble form of Human CD73 with Ecto-5'-Nucleotidase activity

Heuts, D.P., Weissenborn, M.J., Olkhov, R.V., Shaw, A.M., Levy, C.W., Scrutton, N.S.

(2012) Chembiochem 13: 2384-2391

Released	2012-10-03
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	5'-nucleotidase (protein)
Unique Ligands	NAG, PO4, ZN

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4KVQ \| pdb_00004kvq	Download File View File

Crystal Structure of Prochlorococcus marinus aldehyde-deformylating oxygenase wild type with palmitic acid bound

Levy, C.W., Khara, B., Menon, N., Mansell, D., Das, D., Marsh, E.N.G., Leys, D., Scrutton, N.S.

(2013) Chembiochem 14: 1204-1208

Released	2013-06-26
Method	X-RAY DIFFRACTION 1.842 Å
Organisms	Prochlorococcus marinus str. MIT 9313
Macromolecule	Aldehyde decarbonylase (protein)
Unique Ligands	FE, PLM

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4KVR \| pdb_00004kvr	Download File View File

Crystal Structure of Prochlorococcus marinus aldehyde-deformylating oxygenase (mutant V41Y)

Levy, C.W., Khara, B., Menon, N., Mansell, D., Das, D., Marsh, E.N.G., Leys, D., Scrutton, N.S.

(2013) Chembiochem 14: 1204-1208

Released	2013-06-26
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Prochlorococcus marinus str. MIT 9313
Macromolecule	Aldehyde decarbonylase (protein)
Unique Ligands	6NA, FE

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4KVS \| pdb_00004kvs	Download File View File

Crystal Structure of Prochlorococcus marinus aldehyde-deformylating oxygenase (mutant A134F)

Levy, C.W., Khara, B., Menon, N., Mansell, D., Das, D., Marsh, E.N.G., Leys, D., Scrutton, N.S.

(2013) Chembiochem 14: 1204-1208

Released	2013-06-26
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Prochlorococcus marinus str. MIT 9313
Macromolecule	Aldehyde decarbonylase (protein)
Unique Ligands	6NA, FE

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4YXP \| pdb_00004yxp	Download File View File

The structure of the folded domain of the signature multifunctional protein ICP27 from herpes simplex virus-1 reveals an intertwined dimer.

Tunnicliffe, R.B., Schacht, M., Levy, C.W., Jowitt, T.A., Sandri-Goldin, R.M., Golovanov, A.P.

(2015) Sci Rep 5: 11234-11234

Released	2015-06-17
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Human alphaherpesvirus 1 strain 17
Macromolecule	mRNA export factor (protein)
Unique Ligands	ZN

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4Z43 \| pdb_00004z43	Download File View File

Crystal structure of Tryptophan 7-halogenase (PrnA) Mutant E450K

Levy, C.W.

(2015) Chem Sci 6: 3454-3460

Released	2016-01-20
Method	X-RAY DIFFRACTION 2.29 Å
Organisms	Pseudomonas fluorescens
Macromolecule	Flavin-dependent tryptophan halogenase PrnA (protein)
Unique Ligands	CL, FAD, SO4

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4Z44 \| pdb_00004z44	Download File View File

F454K Mutant of Tryptophan 7-halogenase PrnA

Shepherd, S.A., Karthikeyan, C., Latham, J., Struck, A.-W., Thompson, M.L., Menon, B., Levy, C.W., Leys, D., Micklefield, J.

(2015) Chem Sci 6: 3454-3460

Released	2016-04-13
Method	X-RAY DIFFRACTION 2.204 Å
Organisms	Pseudomonas fluorescens
Macromolecule	Flavin-dependent tryptophan halogenase PrnA (protein)
Unique Ligands	CL, FAD, PO4, SO4

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5C5T \| pdb_00005c5t	Download File View File

The crystal structure of viral collagen prolyl hydroxylase vCPH from Paramecium Bursaria Chlorella virus-1 - 2OG complex

Levy, C.W.

(2015) Biochemistry 54: 6093-6105

Released	2015-09-30
Method	X-RAY DIFFRACTION 1.598 Å
Organisms	Paramecium bursaria Chlorella virus 1
Macromolecule	Prolyl 4-hydroxylase (protein)
Unique Ligands	AKG, MN, ZN

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5C5U \| pdb_00005c5u	Download File View File

The crystal structure of viral collagen prolyl hydroxylase vCPH from Paramecium Bursaria Chlorella virus-1 - Truncated Construct

Longbotham, J.E., Levy, C.W., Johannisen, L.O., Tarhonskaya, H., Jiang, S., Loenarz, C., Flashman, E., Hay, S., Schofiled, C.J., Scrutton, N.S.

(2015) Biochemistry 54: 6093-6105

Released	2015-09-30
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Paramecium bursaria Chlorella virus 1
Macromolecule	Prolyl 4-hydroxylase (protein)
Unique Ligands	ACT, MN, UNX

1 to 25 of 74 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1D8A | pdb_00001d8a

1KKO | pdb_00001kko

1KKR | pdb_00001kkr

2XKR | pdb_00002xkr

3K8D | pdb_00003k8d

3K8E | pdb_00003k8e

3KFT | pdb_00003kft

3KOW | pdb_00003kow

3KOX | pdb_00003kox

3KOY | pdb_00003koy

3KOZ | pdb_00003koz

3KP0 | pdb_00003kp0

3KP1 | pdb_00003kp1

3KX3 | pdb_00003kx3

3KX4 | pdb_00003kx4

3KX5 | pdb_00003kx5

4H1S | pdb_00004h1s

4KVQ | pdb_00004kvq

4KVR | pdb_00004kvr

4KVS | pdb_00004kvs

4YXP | pdb_00004yxp

4Z43 | pdb_00004z43

4Z44 | pdb_00004z44

5C5T | pdb_00005c5t

5C5U | pdb_00005c5u