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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Jia, Q."

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Search Summary

This query matches 206 Structures.

Refinements

Structure Determination Methodology

experimental (206)

Scientific Name of Source Organism

	Homo sapiens (57)
	Severe acute respiratory syndrome coronavirus 2 (24)
	Oryza sativa Japonica Group (10)
	Escherichia coli K-12 (8)
	Mus musculus (8)
	Bacillus cereus ATCC 14579 (7)
	Helicobacter pylori (7)
	Human immunodeficiency virus 1 (7)
	Staphylococcus aureus subsp. aureus N315 (6)
	coryneform bacterium (6)

More...

Taxonomy

	Bacteria (89)
	Eukaryota (87)
	Riboviria (57)
	Varidnaviria (6)
	other sequences (6)
	Riboviria (RNA viruses and viroids) (2)

Experimental Method

	X-RAY DIFFRACTION (168)
	ELECTRON MICROSCOPY (37)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (206)
	RNA (2)
	DNA (1)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (6)
	1.5 - 2.0 (48)
	2.0 - 2.5 (62)
	2.5 - 3.0 (44)
	3.0 - 3.5 (29)
	3.5 - 4.0 (12)
	4.0 - 4.5 (2)
	> 4.5 (1)

Release Date

	2000 - 2004 (8)
	2005 - 2009 (18)
	2010 - 2014 (24)
	2015 - 2019 (50)
	2020 - 2024 (98)
	2025 - 2029 (8)

Enzyme Classification Name

	Hydrolases (41)
	Transferases (18)
	Lyases (10)
	Oxidoreductases (9)
	Ligases (8)
	Isomerases (4)
	Translocases (2)

Membrane Protein Annotation

	PDBTM (26)
	MemProtMD (19)
	OPM (12)
	mpstruc (12)

Symmetry Type

	Asymmetric (122)
	Cyclic (76)
	Dihedral (9)
	Icosahedral (3)
	Octahedral (3)
	Tetrahedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (25)
	All beta proteins (18)
	Alpha and beta proteins (a/b) (18)
	Artifacts (12)
	All alpha proteins (4)
	Coiled coil proteins (1)
	Small proteins (2)
	Membrane and cell surface proteins and peptides (3)

AllSelected

1 to 25 of 206 Structures

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1FBM \| pdb_00001fbm	Download File View File

ASSEMBLY DOMAIN OF CARTILAGE OLIGOMERIC MATRIX PROTEIN IN COMPLEX WITH ALL-TRANS RETINOL

Guo, Y., Bozic, D., Malashkevich, V.N., Kammerer, R.A., Schulthess, T.

(1998) EMBO J 17: 5265-5272

Released	2000-08-02
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Rattus norvegicus
Macromolecule	PROTEIN (CARTILAGE OLIGOMERIC MATRIX PROTEIN) (protein)
Unique Ligands	RTL

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1Q5V \| pdb_00001q5v	Download File View File

Apo-NikR

Schreiter, E.R., Sintchak, M.D., Guo, Y., Chivers, P.T., Sauer, R.T., Drennan, C.L.

(2003) Nat Struct Biol 10: 794-799

Released	2003-09-30
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	Nickel responsive regulator (protein)

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1Q5Y \| pdb_00001q5y	Download File View File

Nickel-Bound C-terminal Regulatory Domain of NikR

Schreiter, E.R., Sintchak, M.D., Guo, Y., Chivers, P.T., Sauer, R.T., Drennan, C.L.

(2003) Nat Struct Biol 10: 794-799

Released	2003-09-30
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Escherichia coli
Macromolecule	Nickel responsive regulator (protein)
Unique Ligands	EDO, NI

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1R5I \| pdb_00001r5i	Download File View File

Crystal structure of the MAM-MHC complex

Zhao, Y., Li, Z., Drozd, S.J., Guo, Y., Mourad, W., Li, H.

(2004) Structure 12: 277-288

Released	2004-03-16
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens Influenza A virus (strain A/Swine/Hong Kong/81/1978 H3N2) Metamycoplasma arthritidis
Macromolecule	HLA class II histocompatibility antigen, DR alpha chain (protein) HLA class II histocompatibility antigen, DRB1-1 beta chain (protein) Hemagglutinin peptide (protein) superantigen (protein)
Unique Ligands	PO4

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1SL4 \| pdb_00001sl4	Download File View File

Crystal Structure of DC-SIGN carbohydrate recognition domain complexed with Man4

Guo, Y., Feinberg, H., Conroy, E., Mitchell, D.A., Alvarez, R., Blixt, O., Taylor, M.E., Weis, W.I., Drickamer, K.

(2004) Nat Struct Mol Biol 11: 591-598

Released	2004-06-15
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	mDC-SIGN1B type I isoform (protein)
Unique Ligands	CA
Unique branched monosaccharides	MAN

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1SL5 \| pdb_00001sl5	Download File View File

Crystal Structure of DC-SIGN carbohydrate recognition domain complexed with LNFP III (Dextra L504).

Guo, Y., Feinberg, H., Conroy, E., Mitchell, D.A., Alvarez, R., Blixt, O., Taylor, M.E., Weis, W.I., Drickamer, K.

(2004) Nat Struct Mol Biol 11: 591-598

Released	2004-06-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	mDC-SIGN1B type I isoform (protein)
Unique Ligands	CA, MG
Unique branched monosaccharides	FUC, GAL, NAG

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1SL6 \| pdb_00001sl6	Download File View File

Crystal Structure of a fragment of DC-SIGNR (containg the carbohydrate recognition domain and two repeats of the neck) complexed with Lewis-x.

Guo, Y., Feinberg, H., Conroy, E., Mitchell, D.A., Alvarez, R., Blixt, O., Taylor, M.E., Weis, W.I., Drickamer, K.

(2004) Nat Struct Mol Biol 11: 591-598

Released	2004-06-15
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	C-type lectin DC-SIGNR (protein)
Unique Ligands	CA
Unique branched monosaccharides	FUC, GAL, NDG

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1XAR \| pdb_00001xar	Download File View File

Crystal Structure of a fragment of DC-SIGNR (containing the carbohydrate recognition domain and two repeats of the neck).

Feinberg, H., Guo, Y., Mitchell, D.A., Drickamer, K., Weis, W.I.

(2005) J Biological Chem 280: 1327-1335

Released	2004-11-16
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	CD209 antigen-like protein 1 (protein)
Unique Ligands	NA

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2AXH \| pdb_00002axh	Download File View File

Crystal structures of T cell receptor beta chains related to rheumatoid arthritis

Li, H., Van Vranken, S., Zhao, Y., Li, Z., Guo, Y., Eisele, L., Li, Y.

(2005) Protein Sci 14: 3025-3038

Released	2005-09-20
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	T cell receptor beta chain (protein)

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2AXJ \| pdb_00002axj	Download File View File

Crystal structures of T cell receptor beta chains related to rheumatoid arthritis

Li, H., Van Vranken, S., Zhao, Y., Li, Z., Guo, Y., Eisele, L., Li, Y.

(2005) Protein Sci 14: 3025-3038

Released	2005-09-20
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	SF4 T cell receptor beta chain (protein)

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2N17 \| pdb_00002n17	Download File View File

NMR structure of a Kazal-type serine protease inhibitor from the subterranean termite defense gland of Coptotermes formosanus Shiraki soldiers

Negulescu, H., Guo, Y., Garner, T.P., Goodwin, O.Y., Henderson, G., Laine, R.A., Macnaughtan, M.A.

(2015) PLoS One 10: e0125376-e0125376

Released	2015-05-06
Method	SOLUTION NMR
Organisms	Coptotermes formosanus
Macromolecule	Lysozyme-Protease Inhibitor Protein (protein)

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2OJE \| pdb_00002oje	Download File View File

Mycoplasma arthritidis-derived mitogen complexed with class II MHC molecule HLA-DR1/HA complex in the presence of EDTA

Li, H., Zhao, Y., Guo, Y., Li, Z., Eisele, L., Mourad, W.

(2007) J Biological Chem 282: 5991-6000

Released	2007-01-23
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Influenza A virus Metamycoplasma arthritidis
Macromolecule	HLA class II histocompatibility antigen, DR alpha chain precursor (protein) HLA class II histocompatibility antigen, DRB1-1 beta chain precursor (protein) Superantigen (protein) haemagglutinin peptide 306-318 (protein)
Unique Ligands	PO4

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2OY0 \| pdb_00002oy0	Download File View File

Crystal structure of the West Nile virus methyltransferase

Li, H.M., Zhao, Y.W., Guo, Y., Shi, P.Y.

(2007) J Virol 81: 3891-3903

Released	2007-04-03
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	West Nile virus
Macromolecule	Methyltransferase (protein)
Unique Ligands	SAH

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2PVE \| pdb_00002pve	Download File View File

NMR and X-ray Analysis of Structural Additivity in Metal Binding Site-Swapped Hybrids of Rubredoxin

LeMaster, D.M., Anderson, J.S., Wang, L., Guo, Y., Li, H., Hernandez, G.

(2007) BMC Struct Biol 7: 81-81

Released	2007-12-18
Method	X-RAY DIFFRACTION 0.79 Å
Organisms	Clostridium pasteurianum
Macromolecule	Rubredoxin (protein)
Unique Ligands	ACT, EDO, ZN

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3CEY \| pdb_00003cey	Download File View File

Crystal structure of L3MBTL2

Nady, N., Guo, Y., Pan, P., Allali-Hassani, A., Qi, C., Zhu, H., Dong, A., Mackenzie, F., Crombet, L., Loppnau, P., Kozieradzki, I., Vedadi, M., Edwards, A.M., Weigelt, J., Bountra, C., Arrowsmith, C.H., Bochkarev, A., Read, R., Min, J., Structural Genomics Consortium (SGC)

(2009) Nucleic Acids Res 37: 2204-2210

Released	2008-05-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Lethal(3)malignant brain tumor-like 2 protein (protein)

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3ED0 \| pdb_00003ed0	Download File View File

Crystal structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase (FabZ) from Helicobacter pylori in complex with emodin

Zhang, L., Zhang, H., Liu, W., Guo, Y., Shen, X., Jiang, H.

(2009) BMC Microbiol 9: 91-91

Released	2009-07-21
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Helicobacter pylori
Macromolecule	(3R)-hydroxymyristoyl-acyl carrier protein dehydratase (protein)
Unique Ligands	BEN, CL, EMO

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3F1N \| pdb_00003f1n	Download File View File

Crystal structure of a high affinity heterodimer of HIF2 alpha and ARNT C-terminal PAS domains, with internally bound ethylene glycol.

Scheuermann, T.H., Tomchick, D.R., Machius, M., Guo, Y., Bruick, R.K., Gardner, K.H.

(2009) Proc Natl Acad Sci U S A 106: 450-455

Released	2009-01-20
Method	X-RAY DIFFRACTION 1.479 Å
Organisms	Homo sapiens
Macromolecule	Aryl hydrocarbon receptor nuclear translocator (protein) Endothelial PAS domain-containing protein 1 (protein)
Unique Ligands	EDO

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3F1O \| pdb_00003f1o	Download File View File

Crystal structure of the high affinity heterodimer of HIF2 alpha and ARNT C-terminal PAS domains, with an internally-bound artificial ligand

Scheuermann, T.H., Tomchick, D.R., Machius, M., Guo, Y., Bruick, R.K., Gardner, K.H.

(2009) Proc Natl Acad Sci U S A 106: 450-455

Released	2009-01-20
Method	X-RAY DIFFRACTION 1.598 Å
Organisms	Homo sapiens
Macromolecule	Aryl hydrocarbon receptor nuclear translocator (protein) Endothelial PAS domain-containing protein 1 (protein)
Unique Ligands	2XY, EDO

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3F1P \| pdb_00003f1p	Download File View File

Crystal structure of a high affinity heterodimer of HIF2 alpha and ARNT C-terminal PAS domains

Scheuermann, T.H., Tomchick, D.R., Machius, M., Guo, Y., Bruick, R.K., Gardner, K.H.

(2009) Proc Natl Acad Sci U S A 106: 450-455

Released	2009-01-20
Method	X-RAY DIFFRACTION 1.17 Å
Organisms	Homo sapiens
Macromolecule	Aryl hydrocarbon receptor nuclear translocator (protein) Endothelial PAS domain-containing protein 1 (protein)

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3F70 \| pdb_00003f70	Download File View File

Crystal structure of L3MBTL2-H4K20me1 complex

Guo, Y., Qi, C., Allali-Hassani, A., Pan, P., Zhu, H., Dong, A., Mackenzie, F., Crombet, L., Loppnau, P., Kozieradzki, I., Vedadi, M., Edwards, A.M., Weigelt, J., Bountra, C., Arrowsmith, C.H., Botchkarev, A., Read, R., Min, J., Structural Genomics Consortium (SGC)

(2009) Nucleic Acids Res 37: 2204-2210

Released	2009-01-06
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Lethal(3)malignant brain tumor-like 2 protein (protein)
Unique Ligands	MLZ

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3FDR \| pdb_00003fdr	Download File View File

Crystal structure of TDRD2

Amaya, M.F., Adams, M.A., Guo, Y., Li, Y., Kozieradzki, I., Edwards, A.M., Arrowsmith, C.H., Weigelt, J., Bountra, C., Bochkarev, A., Min, J., Structural Genomics Consortium (SGC)

(2009) Proc Natl Acad Sci U S A 106: 20336-20341

Released	2009-01-06
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Tudor and KH domain-containing protein (protein)

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3GAS \| pdb_00003gas	Download File View File

Crystal Structure of Helicobacter pylori Heme Oxygenase Hugz in Complex with Heme

Jiang, F., Hu, Y.L., Guo, Y., Guo, G., Zou, Q.M., Wang, D.C.

To be published

Released	2010-02-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Helicobacter pylori NCTC 11639
Macromolecule	heme oxygenase (protein)
Unique Ligands	AZI, EDO, HEM

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3H8Z \| pdb_00003h8z	Download File View File

The Crystal Structure of the Tudor Domains from FXR2

Amaya, M.F., Dong, A., Adams-Cioaba, M.A., Guo, Y., MacKenzie, F., Kozieradzki, I., Edwards, A.M., Arrowsmith, C.H., Bochkarev, A., Min, J., Structural Genomics Consortium (SGC)

(2010) PLoS One 5: e13559-e13559

Released	2009-06-16
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Homo sapiens
Macromolecule	Fragile X mental retardation syndrome-related protein 2 (protein)

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3HW3 \| pdb_00003hw3	Download File View File

The crystal structure of avian influenza virus PA_N in complex with UMP

Zhao, C., Lou, Z., Guo, Y., Ma, M., Chen, Y., Rao, Z.

(2009) J Virol 83: 9024-9030

Released	2009-10-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Influenza A virus (A/goose/Guangdong/1/1996(H5N1))
Macromolecule	Polymerase acidic protein (protein)
Unique Ligands	MG, U5P

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3HW4 \| pdb_00003hw4	Download File View File

Crystal structure of avian influenza A virus in complex with TMP

Zhao, C., Lou, Z., Guo, Y., Ma, M., Chen, Y., Rao, Z.

(2009) J Virol 83: 9024-9030

Released	2009-11-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Influenza A virus (A/goose/Guangdong/1/1996(H5N1))
Macromolecule	Polymerase acidic protein (protein)
Unique Ligands	MG, TMP

1 to 25 of 206 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1FBM | pdb_00001fbm

1Q5V | pdb_00001q5v

1Q5Y | pdb_00001q5y

1R5I | pdb_00001r5i

1SL4 | pdb_00001sl4

1SL5 | pdb_00001sl5

1SL6 | pdb_00001sl6

1XAR | pdb_00001xar

2AXH | pdb_00002axh

2AXJ | pdb_00002axj

2N17 | pdb_00002n17

2OJE | pdb_00002oje

2OY0 | pdb_00002oy0

2PVE | pdb_00002pve

3CEY | pdb_00003cey

3ED0 | pdb_00003ed0

3F1N | pdb_00003f1n

3F1O | pdb_00003f1o

3F1P | pdb_00003f1p

3F70 | pdb_00003f70

3FDR | pdb_00003fdr

3GAS | pdb_00003gas

3H8Z | pdb_00003h8z

3HW3 | pdb_00003hw3

3HW4 | pdb_00003hw4