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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Inoue, T."

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Search Summary

This query matches 233 Structures.

Refinements

Structure Determination Methodology

experimental (233)

Scientific Name of Source Organism

	Homo sapiens (37)
	Geobacillus thermodenitrificans NG80-2 (18)
	Mus musculus (15)
	Ramazzottius varieornatus (13)
	Alcaligenes faecalis (10)
	Thermococcus kodakarensis KOD1 (10)
	Staphylococcus aureus subsp. aureus MRSA252 (9)
	Aeropyrum pernix K1 (8)
	Phytolacca americana (8)
	Streptomyces avidinii (7)

More...

Taxonomy

	Eukaryota (109)
	Bacteria (102)
	Archaea (23)
	Riboviria (3)

Experimental Method

	X-RAY DIFFRACTION (225)
	SOLUTION NMR (5)
	ELECTRON MICROSCOPY (3)
	NEUTRON DIFFRACTION (2)
	SOLUTION SCATTERING (1)

Polymer Entity Type

	Protein (232)
	DNA (2)
	RNA (2)

Refinement Resolution (Å)

	0.5 - 1.0 (9)
	1.0 - 1.5 (42)
	1.5 - 2.0 (80)
	2.0 - 2.5 (59)
	2.5 - 3.0 (31)
	3.0 - 3.5 (7)
	3.5 - 4.0 (1)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (18)
	2000 - 2004 (22)
	2005 - 2009 (29)
	2010 - 2014 (55)
	2015 - 2019 (73)
	2020 - 2024 (35)

Enzyme Classification Name

	Oxidoreductases (53)
	Transferases (39)
	Hydrolases (28)
	Isomerases (22)
	Lyases (13)
	Ligases (2)

Membrane Protein Annotation

	OPM (4)
	mpstruc (4)

Symmetry Type

	Asymmetric (118)
	Cyclic (81)
	Dihedral (38)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a/b) (70)
	All beta proteins (84)
	Alpha and beta proteins (a+b) (19)
	Artifacts (27)
	All alpha proteins (20)
	Multi-domain proteins (alpha and beta) (2)
	Small proteins (1)

AllSelected

1 to 25 of 233 Structures

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1BQ5 \| pdb_00001bq5	Download File View File

NITRITE REDUCTASE FROM ALCALIGENES XYLOSOXIDANS GIFU 1051

Inoue, T., Gotowda, M., Deligeer, Suzuki, S., Kataoka, K., Yamaguchi, K., Watanabe, H., Goho, M., Yasushi, K.A.I.

(1998) J Biochem 124: 876-879

Released	1999-08-21
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Achromobacter xylosoxidans
Macromolecule	NITRITE REDUCTASE (protein)
Unique Ligands	CU

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1BQK \| pdb_00001bqk	Download File View File

OXIDIZED PSEUDOAZURIN

Inoue, T., Nishio, N., Hamanaka, S., Shimomura, T., Harada, S., Suzuki, S., Kohzuma, T., Shidara, S., Iwasaki, H., Kai, Y.

(1999) J Biological Chem 274: 17845-17852

Released	1999-08-17
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Achromobacter cycloclastes
Macromolecule	PSEUDOAZURIN (protein)
Unique Ligands	CU

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1BQR \| pdb_00001bqr	Download File View File

REDUCED PSEUDOAZURIN

Inoue, T., Nishio, N., Hamanaka, S., Shimomura, T., Harada, S., Suzuki, S., Kohzuma, T., Shidara, S., Iwasaki, H., Kai, Y.

(1999) J Biological Chem 274: 17845-17852

Released	1999-08-17
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Achromobacter cycloclastes
Macromolecule	PSEUDOAZURIN (protein)
Unique Ligands	CU

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1BWV \| pdb_00001bwv	Download File View File

Activated Ribulose 1,5-Bisphosphate Carboxylase/Oxygenase (RUBISCO) Complexed with the Reaction Intermediate Analogue 2-Carboxyarabinitol 1,5-Bisphosphate

Sugawara, H., Yamamoto, H., Shibata, N., Inoue, T., Miyake, C., Yokota, A., Kai, Y.

(1999) J Biological Chem 274: 15655-15661

Released	1999-09-27
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Galdieria partita
Macromolecule	PROTEIN (RIBULOSE BISPHOSPHATE CARBOXYLASE) (protein)
Unique Ligands	CAP, MG

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1BXU \| pdb_00001bxu	Download File View File

OXIDIZED PLASTOCYANIN FROM SYNECHOCOCCUS SP.

Inoue, T., Sugawara, H., Hamanaka, S., Tsukui, H., Suzuki, E., Kohzuma, T., Kai, Y.

(1999) Biochemistry 38: 6063-6069

Released	1999-06-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Synechococcus elongatus PCC 7942 = FACHB-805
Macromolecule	PLASTOCYANIN (protein)
Unique Ligands	CU

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1BXV \| pdb_00001bxv	Download File View File

REDUCED PLASTOCYANIN FROM SYNECHOCOCCUS SP.

Inoue, T., Sugawara, H., Hamanaka, S., Tsukui, H., Suzuki, E., Kohzuma, T., Kai, Y.

(1999) Biochemistry 38: 6063-6069

Released	1999-06-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Synechococcus elongatus PCC 7942 = FACHB-805
Macromolecule	PLASTOCYANIN (protein)
Unique Ligands	CU

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1BYO \| pdb_00001byo	Download File View File

WILD-TYPE PLASTOCYANIN FROM SILENE

Sugawara, H., Inoue, T., Li, C., Gotowda, M., Hibino, T., Takabe, T., Kai, Y.

(1999) J Biochem 125: 899-903

Released	1999-10-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Silene latifolia subsp. alba
Macromolecule	PROTEIN (PLASTOCYANIN) (protein)
Unique Ligands	CU

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1BYP \| pdb_00001byp	Download File View File

E43K,D44K DOUBLE MUTANT PLASTOCYANIN FROM SILENE

Sugawara, H., Inoue, T., Li, C., Gotowda, M., Hibino, T., Takabe, T., Kai, Y.

(1999) J Biochem 125: 899-903

Released	1999-10-19
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Silene latifolia subsp. alba
Macromolecule	PROTEIN (PLASTOCYANIN) (protein)
Unique Ligands	CU

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1CUO \| pdb_00001cuo	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF ISOMER-2 AZURIN FROM METHYLOMONAS J

Inoue, T., Nishio, N., Kai, Y., Suzuki, S., Kataoka, K.

(2003) J Mol Biology 333: 117-124

Released	2000-08-23
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Methylomonas sp. J
Macromolecule	PROTEIN (AZURIN ISO-2) (protein)
Unique Ligands	CU

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1FIY \| pdb_00001fiy	Download File View File

THREE-DIMENSIONAL STRUCTURE OF PHOSPHOENOLPYRUVATE CARBOXYLASE FROM ESCHERICHIA COLI AT 2.8 A RESOLUTION

Kai, Y., Matsumura, H., Inoue, T., Terada, K., Nagara, Y., Yoshinaga, T., Kihara, A., Izui, K.

(1999) Proc Natl Acad Sci U S A 96: 823-828

Released	1999-02-09
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli K-12
Macromolecule	PHOSPHOENOLPYRUVATE CARBOXYLASE (protein)
Unique Ligands	ASP

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1IR1 \| pdb_00001ir1	Download File View File

Crystal Structure of Spinach Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase (Rubisco) Complexed with CO2, Mg2+ and 2-Carboxyarabinitol-1,5-Bisphosphate

Mizohata, E., Matsumura, H., Okano, Y., Kumei, M., Takuma, H., Onodera, J., Kato, K., Shibata, N., Inoue, T., Yokota, A., Kai, Y.

(2002) J Mol Biology 316: 679-691

Released	2002-03-13
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Spinacia oleracea
Macromolecule	Large subunit of Rubisco (protein) Small subunit of Rubisco (protein)
Unique Ligands	CAP, MG

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1IR2 \| pdb_00001ir2	Download File View File

Crystal Structure of Activated Ribulose-1,5-bisphosphate Carboxylase/oxygenase (Rubisco) from Green alga, Chlamydomonas reinhardtii Complexed with 2-Carboxyarabinitol-1,5-bisphosphate (2-CABP)

Mizohata, E., Matsumura, H., Okano, Y., Kumei, M., Takuma, H., Onodera, J., Kato, K., Shibata, N., Inoue, T., Yokota, A., Kai, Y.

(2002) J Mol Biology 316: 679-691

Released	2002-03-20
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Chlamydomonas reinhardtii
Macromolecule	Large subunit of Rubisco (protein) Small subunit of Rubisco (protein)
Unique Ligands	CAP, GOL, MG

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1IWA \| pdb_00001iwa	Download File View File

RUBISCO FROM GALDIERIA PARTITA

Okano, Y., Mizohata, E., Xie, Y., Matsumura, H., Sugawara, H., Inoue, T., Yokota, A., Kai, Y.

(2002) FEBS Lett 527: 33-36

Released	2003-04-30
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Galdieria partita
Macromolecule	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (protein) ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit (protein)
Unique Ligands	SO4

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1IYH \| pdb_00001iyh	Download File View File

Crystal structure of hematopoietic prostaglandin D synthase

Inoue, T.

(2003) Nat Struct Biol 10: 291-296

Released	2003-04-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	HEMATOPOIETIC PROSTAGLANDIN D SYNTHASE (protein)
Unique Ligands	GSH, MG

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1IYI \| pdb_00001iyi	Download File View File

Crystal structure of hematopoietic prostaglandin D synthase

Inoue, T.

(2003) Nat Struct Biol 10: 291-296

Released	2003-04-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	HEMATOPOIETIC PROSTAGLANDIN D SYNTHASE (protein)
Unique Ligands	CA, GSH

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1J2T \| pdb_00001j2t	Download File View File

Creatininase Mn

Yoshimoto, T., Tanaka, N., Kanada, N., Inoue, T., Nakajima, Y., Haratake, M., Nakamura, K.T., Xu, Y., Ito, K.

(2004) J Mol Biology 337: 399-416

Released	2004-01-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pseudomonas putida
Macromolecule	creatinine amidohydrolase (protein)
Unique Ligands	MN, SO4, ZN

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1J2U \| pdb_00001j2u	Download File View File

Creatininase Zn

Yoshimoto, T., Tanaka, N., Kanada, N., Inoue, T., Nakajima, Y., Haratake, M., Nakamura, K.T., Xu, Y., Ito, K.

(2004) J Mol Biology 337: 399-416

Released	2004-01-27
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Pseudomonas putida
Macromolecule	creatinine amidohydrolase (protein)
Unique Ligands	SO4, ZN

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1K2G \| pdb_00001k2g	Download File View File

Structural basis for the 3'-terminal guanosine recognition by the group I intron

Kitamura, Y., Muto, Y., Watanabe, S., Kim, I., Ito, T., Nishiya, Y., Sakamoto, K., Ohtsuki, T., Kawai, G., Watanabe, K., Hosono, K., Takaku, H., Katoh, E., Yamazaki, T., Inoue, T., Yokoyama, S.

(2002) RNA 8: 440-451

Released	2002-05-08
Method	SOLUTION NMR
Macromolecule	5'-R(CPAPGPAPCPUPUPCPGPGPUPCPGPCPAPGPAPGPAPUPGPG)-3' (nucleic acid)

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1KDI \| pdb_00001kdi	Download File View File

REDUCED FORM OF PLASTOCYANIN FROM DRYOPTERIS CRASSIRHIZOMA

Inoue, T., Gotowda, M., Hamada, K., Kohzuma, T., Yoshizaki, F., Sugimura, Y., Kai, Y.

(1999) J Biological Chem 274: 11817-11823

Released	1999-05-11
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Adiantum capillus-veneris
Macromolecule	PLASTOCYANIN (protein)
Unique Ligands	CU

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1KDJ \| pdb_00001kdj	Download File View File

OXIDIZED FORM OF PLASTOCYANIN FROM DRYOPTERIS CRASSIRHIZOMA

Inoue, T., Gotowda, M., Hamada, K., Kohzuma, T., Yoshizaki, F., Sugimura, Y., Kai, Y.

(1999) J Biological Chem 274: 11817-11823

Released	1999-05-11
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Adiantum capillus-veneris
Macromolecule	PLASTOCYANIN (protein)
Unique Ligands	CU

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1KS9 \| pdb_00001ks9	Download File View File

Ketopantoate Reductase from Escherichia coli

Matak-Vinkovic, D., Vinkovic, M., Saldanha, S.A., Ashurst, J.A., von Delft, F., Inoue, T., Miguel, R.N., Smith, A.G., Blundell, T.L., Abell, C.

(2001) Biochemistry 40: 14493-14500

Released	2002-01-25
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	2-DEHYDROPANTOATE 2-REDUCTASE (protein)

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1M3U \| pdb_00001m3u	Download File View File

Crystal Structure of Ketopantoate Hydroxymethyltransferase complexed the Product Ketopantoate

von Delft, F., Inoue, T., Saldanha, S.A., Ottenhof, H.H., Dhanaraj, V., Witty, M., Abell, C., Smith, A.G., Blundell, T.L.

(2003) Structure 11: 985-996

Released	2003-07-22
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	3-methyl-2-oxobutanoate hydroxymethyltransferase (protein)
Unique Ligands	KPL, MG

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1MGT \| pdb_00001mgt	Download File View File

CRYSTAL STRUCTURE OF O6-METHYLGUANINE-DNA METHYLTRANSFERASE FROM HYPERTHERMOPHILIC ARCHAEON PYROCOCCUS KODAKARAENSIS STRAIN KOD1

Hashimoto, H., Inoue, T., Nishioka, M., Fujiwara, S., Takagi, M., Imanaka, T., Kai, Y.

(1999) J Mol Biology 292: 707-716

Released	2000-01-07
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermococcus kodakarensis KOD1
Macromolecule	PROTEIN (O6-METHYLGUANINE-DNA METHYLTRANSFERASE) (protein)
Unique Ligands	SO4

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1MHO \| pdb_00001mho	Download File View File

THE 2.0 A STRUCTURE OF HOLO S100B FROM BOVINE BRAIN

Matsumura, H., Shiba, T., Inoue, T., Harada, S., Yasushi, K.A.I.

(1998) Structure 6: 233-241

Released	1998-11-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus
Macromolecule	S-100 PROTEIN (protein)
Unique Ligands	CA

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1MSE \| pdb_00001mse	Download File View File

SOLUTION STRUCTURE OF A SPECIFIC DNA COMPLEX OF THE MYB DNA-BINDING DOMAIN WITH COOPERATIVE RECOGNITION HELICES

Ogata, K., Morikawa, S., Nakamura, H., Sekikawa, A., Inoue, T., Kanai, H., Sarai, A., Ishii, S., Nishimura, Y.

(1994) Cell 79: 639-648

Released	1995-03-31
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	C-Myb DNA-Binding Domain (protein) DNA (5'-D(APTPGPTPGPTPGPTPCPAPGPTPTPAPGPG)-3') (nucleic acid) DNA (5'-D(CPCPTPAPAPCPTPGPAPCPAPCPAPCPAPT)-3') (nucleic acid)

1 to 25 of 233 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1BQ5 | pdb_00001bq5

1BQK | pdb_00001bqk

1BQR | pdb_00001bqr

1BWV | pdb_00001bwv

1BXU | pdb_00001bxu

1BXV | pdb_00001bxv

1BYO | pdb_00001byo

1BYP | pdb_00001byp

1CUO | pdb_00001cuo

1FIY | pdb_00001fiy

1IR1 | pdb_00001ir1

1IR2 | pdb_00001ir2

1IWA | pdb_00001iwa

1IYH | pdb_00001iyh

1IYI | pdb_00001iyi

1J2T | pdb_00001j2t

1J2U | pdb_00001j2u

1K2G | pdb_00001k2g

1KDI | pdb_00001kdi

1KDJ | pdb_00001kdj

1KS9 | pdb_00001ks9

1M3U | pdb_00001m3u

1MGT | pdb_00001mgt

1MHO | pdb_00001mho

1MSE | pdb_00001mse