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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Imprachim, N."

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Search Summary

This query matches 1,639 Structures.

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Structure Determination Methodology

experimental (1,639)

Scientific Name of Source Organism

	Homo sapiens (569)
	Severe acute respiratory syndrome coronavirus 2 (167)
	Sus scrofa (90)
	Arabidopsis thaliana (46)
	Mus musculus (46)
	synthetic construct (43)
	Helicobacter pylori (28)
	Escherichia coli K-12 (24)
	Saccharomyces cerevisiae S288C (24)
	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (24)

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Taxonomy

	Eukaryota (955)
	Bacteria (462)
	Riboviria (311)
	other sequences (47)
	Archaea (32)
	Duplodnaviria (26)
	Varidnaviria (12)
	unclassified sequences (10)
	Riboviria (RNA viruses and viroids) (1)

Experimental Method

	X-RAY DIFFRACTION (1,157)
	ELECTRON MICROSCOPY (462)
	SOLUTION NMR (19)
	SOLID-STATE NMR (1)

Polymer Entity Type

	Protein (1,619)
	RNA (82)
	DNA (60)

Refinement Resolution (Å)

	1.0 - 1.5 (60)
	1.5 - 2.0 (375)
	2.0 - 2.5 (396)
	2.5 - 3.0 (335)
	3.0 - 3.5 (257)
	3.5 - 4.0 (124)
	4.0 - 4.5 (42)
	> 4.5 (27)

Release Date

	1995 - 1999 (12)
	2000 - 2004 (10)
	2005 - 2009 (78)
	2010 - 2014 (190)
	2015 - 2019 (305)
	2020 - 2024 (996)
	2025 - 2029 (48)

Enzyme Classification Name

	Translocases (96)
	Hydrolases (321)
	Transferases (283)
	Oxidoreductases (157)
	Lyases (45)
	Isomerases (29)
	Ligases (34)

Membrane Protein Annotation

	PDBTM (226)
	OPM (113)
	mpstruc (106)
	MemProtMD (117)

Symmetry Type

	Asymmetric (963)
	Cyclic (575)
	Dihedral (71)
	Icosahedral (22)
	Octahedral (14)
	Helical (1)

SCOP Classification

	All beta proteins (171)
	Alpha and beta proteins (a+b) (144)
	Alpha and beta proteins (a/b) (98)
	All alpha proteins (86)
	Artifacts (116)
	Membrane and cell surface proteins and peptides (11)
	Multi-domain proteins (alpha and beta) (3)
	Coiled coil proteins (3)
	Small proteins (3)
	Peptides (1)

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AllSelected

1 to 25 of 1,639 Structures

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1B11 \| pdb_00001b11	Download File View File

STRUCTURE OF FELINE IMMUNODEFICIENCY VIRUS PROTEASE COMPLEXED WITH TL-3-093

Gustchina, A., Li, M., Wlodawer, A.

(2000) Proteins 38: 29-40

Released	1998-12-02
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Feline immunodeficiency virus
Macromolecule	PROTEIN (Feline Immunodeficiency Virus PROTEASE) (protein)
Unique Ligands	3TL, SO4

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1CF5 \| pdb_00001cf5	Download File View File

BETA-MOMORCHARIN STRUCTURE AT 2.55 A

Yuan, Y.-R., He, Y.-N., Xiong, J.-P., Xia, Z.-X.

(1999) Acta Crystallogr D Biol Crystallogr 55: 1144-1151

Released	1999-06-07
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Momordica charantia
Macromolecule	PROTEIN (BETA-MOMORCHARIN) (protein)
Unique branched monosaccharides	BMA, FUC, MAN, NAG, XYP

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1EYY \| pdb_00001eyy	Download File View File

CRYSTAL STRUCTURE OF THE NADP+ DEPENDENT ALDEHYDE DEHYDROGENASE FROM VIBRIO HARVEYI.

Ahvazi, B., Coulombe, R., Delarge, M., Vedadi, M., Zhang, L., Meighen, E., Vrielink, A.

(2000) Biochem J 349: 853-861

Released	2000-05-24
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Vibrio harveyi
Macromolecule	ALDEHYDE DEHYDROGENASE (protein)
Unique Ligands	NAP

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1EZ0 \| pdb_00001ez0	Download File View File

CRYSTAL STRUCTURE OF THE NADP+ DEPENDENT ALDEHYDE DEHYDROGENASE FROM VIBRIO HARVEYI.

Ahvazi, B., Coulombe, R., Delarge, M., Vedadi, M., Zhang, L., Meighen, E., Vrielink, A.

(2000) Biochem J 349: 853-861

Released	2000-05-24
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Vibrio harveyi
Macromolecule	ALDEHYDE DEHYDROGENASE (protein)
Unique Ligands	NAP

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1HWT \| pdb_00001hwt	Download File View File

STRUCTURE OF A HAP1/DNA COMPLEX REVEALS DRAMATICALLY ASYMMETRIC DNA BINDING BY A HOMODIMERIC PROTEIN

King, D.A., Zhang, L., Guarente, L., Marmorstein, R.

(1999) Nat Struct Biol 6: 64-71

Released	1999-11-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	PROTEIN (HEME ACTIVATOR PROTEIN) (protein) DNA (5'-D(GPCPGPCPTPAPTPTPAPTPCPGPCPTPAPTPTPAPGPC)-3') (nucleic acid) DNA (5'-D(GPCPTPAPAPTPAPGPCPGPAPTPAPAPTPAPGPCPGPC)-3') (nucleic acid)
Unique Ligands	ZN

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1KXK \| pdb_00001kxk	Download File View File

Crystal Structure of a RNA Molecule Containing Domain 5 and 6 of the Yeast ai5g Group II Self-splicing Intron

Zhang, L., Doudna, J.A.

(2002) Science 295: 2084-2088

Released	2002-03-22
Method	X-RAY DIFFRACTION 3 Å
Macromolecule	ai5g group II Self-splicing intron (nucleic acid)
Unique Ligands	MG

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1L0L \| pdb_00001l0l	Download File View File

structure of bovine mitochondrial cytochrome bc1 complex with a bound fungicide famoxadone

Gao, X., Wen, X., Yu, C.A., Esser, L., Tsao, S., Quinn, B., Zhang, L., Yu, L., Xia, D.

(2003) Biochemistry 41: 11692-11702

Released	2003-04-08
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	FES, FMX, HEM

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1L0N \| pdb_00001l0n	Download File View File

native structure of bovine mitochondrial cytochrome bc1 complex

Gao, X., Wen, X., Yu, C.A., Esser, L., Tsao, S., Quinn, B., Zhang, L., Yu, L., Xia, D.

(2003) Biochemistry 41: 11692-11702

Released	2003-04-08
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	FES, HEM

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1NYJ \| pdb_00001nyj	Download File View File

The closed state structure of M2 protein H+ channel by solid state NMR spectroscopy

Nishimura, K., Kim, S., Zhang, L., Cross, T.A.

(2002) Biochemistry 41: 13170-13177

Released	2003-03-25
Method	SOLID-STATE NMR
Organisms	Influenza A virus (strain A/USSR/90/1977 H1N1)
Macromolecule	Matrix protein M2 (protein)

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1ORD \| pdb_00001ord	Download File View File

CRYSTALLOGRAPHIC STRUCTURE OF A PLP-DEPENDENT ORNITHINE DECARBOXYLASE FROM LACTOBACILLUS 30A TO 3.1 ANGSTROMS RESOLUTION

Hackert, M.L., Momany, C., Ernst, S., Ghosh, R.

(1995) J Mol Biology 252: 643-655

Released	1995-09-15
Method	X-RAY DIFFRACTION 3 Å
Organisms	Lactobacillus sp. 30A
Macromolecule	ORNITHINE DECARBOXYLASE (protein)
Unique Ligands	PLP

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1QCR \| pdb_00001qcr	Download File View File

CRYSTAL STRUCTURE OF BOVINE MITOCHONDRIAL CYTOCHROME BC1 COMPLEX, ALPHA CARBON ATOMS ONLY

Xia, D., Yu, C.A., Kim, H., Xia, J.Z., Kachurin, A., Zhang, L., Yu, L., Deisenhofer, J.

(1997) Science 277: 60-66

Released	1998-10-14
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	HEM

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1QP9 \| pdb_00001qp9	Download File View File

STRUCTURE OF HAP1-PC7 COMPLEXED TO THE UAS OF CYC7

Lukens, A., King, D., Marmorstein, R.

(2000) Nucleic Acids Res 28: 3853-3863

Released	2000-10-09
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYP1(HAP1-PC7) ACTIVATORY PROTEIN (protein) DNA (5'-D(APCPGPCPTPAPTPTPAPTPCPGPCPTPAPTPTPAPGPT)-3') (nucleic acid) DNA (5'-D(APCPTPAPAPTPAPGPCPGPAPTPAPAPTPAPGPCPGPT)-3') (nucleic acid)
Unique Ligands	ZN

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1SQB \| pdb_00001sqb	Download File View File

Crystal Structure Analysis of Bovine Bc1 with Azoxystrobin

Esser, L., Quinn, B., Li, Y.F., Zhang, M., Elberry, M., Yu, L., Yu, C.A., Xia, D.

(2004) J Mol Biology 341: 281-302

Released	2004-09-07
Method	X-RAY DIFFRACTION 2.69 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	AZO, FES, HEM

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1SQP \| pdb_00001sqp	Download File View File

Crystal Structure Analysis of Bovine Bc1 with Myxothiazol

Esser, L., Quinn, B., Li, Y.F., Zhang, M., Elberry, M., Yu, L., Yu, C.A., Xia, D.

(2004) J Mol Biology 341: 281-302

Released	2005-11-01
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	CDL, FES, HEC, MYX, PEE, PLX

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1SQQ \| pdb_00001sqq	Download File View File

Crystal Structure Analysis of Bovine Bc1 with Methoxy Acrylate Stilbene (MOAS)

Esser, L., Quinn, B., Li, Y.F., Zhang, M., Elberry, M., Yu, L., Yu, C.A., Xia, D.

(2004) J Mol Biology 341: 281-302

Released	2005-10-25
Method	X-RAY DIFFRACTION 3 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	FES, HEC, OST, UQ2

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1SQV \| pdb_00001sqv	Download File View File

Crystal Structure Analysis of Bovine Bc1 with UHDBT

Esser, L., Quinn, B., Li, Y.F., Zhang, M., Elberry, M., Yu, L., Yu, C.A., Xia, D.

(2004) J Mol Biology 341: 281-302

Released	2005-09-06
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	FES, HEC, UHD, UQ2

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1SQX \| pdb_00001sqx	Download File View File

Crystal Structure Analysis of Bovine Bc1 with Stigmatellin A

Esser, L., Quinn, B., Li, Y.F., Zhang, M., Elberry, M., Yu, L., Yu, C.A., Xia, D.

(2004) J Mol Biology 341: 281-302

Released	2005-09-06
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	FES, HEC, SMA, UQ2

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1TCS \| pdb_00001tcs	Download File View File

CRYSTAL STRUCTURE OF TRICHOSANTHIN-NADPH COMPLEX AT 1.7 ANGSTROMS RESOLUTION REVEALS ACTIVE-SITE ARCHITECTURE

Xiong, J.-P., Xia, Z.-X., Wang, Y.

(1994) Nat Struct Biol 1: 695-700

Released	1995-07-10
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Trichosanthes kirilowii
Macromolecule	TRICHOSANTHIN (protein)
Unique Ligands	NDP

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1ULW \| pdb_00001ulw	Download File View File

Crystal structure of P450nor Ser73Gly/Ser75Gly mutant

Oshima, R., Fushinobu, S., Su, F., Li, Z., Takaya, N., Shoun, H.

(2004) J Mol Biology 342: 207-217

Released	2004-10-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Fusarium oxysporum
Macromolecule	Cytochrome P450 55A1 (protein)
Unique Ligands	HEM

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1XQD \| pdb_00001xqd	Download File View File

Crystal structure of P450NOR complexed with 3-pyridinealdehyde adenine dinucleotide

Oshima, R., Fushinobu, S., Takaya, N., Su, F., Wakagi, T., Shoun, H.

(2004) J Mol Biology 342: 207-217

Released	2004-10-26
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Fusarium oxysporum
Macromolecule	CYTOCHROME P450 55A1 (protein)
Unique Ligands	DND, HEM

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2ABJ \| pdb_00002abj	Download File View File

Crystal structure of human branched chain amino acid transaminase in a complex with an inhibitor, C16H10N2O4F3SCl, and pyridoxal 5' phosphate.

Ohren, J.F., Moreland, D.W., Rubin, J.R., Hu, H.L., McConnell, P.C., Mistry, A., Mueller, W.T., Scholten, J.D., Hasemann, C.H.

(2006) Bioorg Med Chem Lett 16: 2337-2340

Released	2006-06-27
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Branched-chain-amino-acid aminotransferase, cytosolic (protein)
Unique Ligands	CBC, PLP

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2C9P \| pdb_00002c9p	Download File View File

Cu(I)Cu(II)-CopC at pH 4.5

Zhang, L., Koay, M., Maher, M.J., Xiao, Z., Wedd, A.G.

(2006) J Am Chem Soc 128: 5834

Released	2006-05-03
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Pseudomonas syringae pv. tomato
Macromolecule	COPPER RESISTANCE PROTEIN C (protein)
Unique Ligands	CU, NO3

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2C9Q \| pdb_00002c9q	Download File View File

Cu(I)Cu(II)-CopC at pH 7.5

Zhang, L., Koay, M., Maher, M.J., Xiao, Z., Wedd, A.G.

(2006) J Am Chem Soc 128: 5834

Released	2006-05-03
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Pseudomonas syringae pv. tomato
Macromolecule	COPPER RESISTANCE PROTEIN C (protein)
Unique Ligands	CU

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2C9R \| pdb_00002c9r	Download File View File

apo-H91F CopC

Zhang, L., Koay, M., Maher, M.J., Xiao, Z., Wedd, A.G.

(2006) J Am Chem Soc 128: 5834

Released	2006-05-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudomonas syringae pv. tomato
Macromolecule	COPPER RESISTANCE PROTEIN C (protein)
Unique Ligands	NA

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2CSE \| pdb_00002cse	Download File View File

Features of Reovirus Outer-Capsid Protein mu1 Revealed by Electron and Image Reconstruction of the virion at 7.0-A Resolution

Zhang, X., Ji, Y., Zhang, L., Harrison, S.C., Marinescu, D.C., Nibert, M.L., Baker, T.S.

(2005) Structure 13: 1545-1557

Released	2005-10-18
Method	ELECTRON MICROSCOPY 7 Å
Organisms	Mammalian orthoreovirus 1 Lang Mammalian orthoreovirus 3 Dearing
Macromolecule	Unique protein chains: 6

1 to 25 of 1,639 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1B11 | pdb_00001b11

1CF5 | pdb_00001cf5

1EYY | pdb_00001eyy

1EZ0 | pdb_00001ez0

1HWT | pdb_00001hwt

1KXK | pdb_00001kxk

1L0L | pdb_00001l0l

1L0N | pdb_00001l0n

1NYJ | pdb_00001nyj

1ORD | pdb_00001ord

1QCR | pdb_00001qcr

1QP9 | pdb_00001qp9

1SQB | pdb_00001sqb

1SQP | pdb_00001sqp

1SQQ | pdb_00001sqq

1SQV | pdb_00001sqv

1SQX | pdb_00001sqx

1TCS | pdb_00001tcs

1ULW | pdb_00001ulw

1XQD | pdb_00001xqd

2ABJ | pdb_00002abj

2C9P | pdb_00002c9p

2C9Q | pdb_00002c9q

2C9R | pdb_00002c9r

2CSE | pdb_00002cse