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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Gruic-Sovulj, I."

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Search Summary

This query matches 13 Structures.

Refinements

Structure Determination Methodology

experimental (13)

Scientific Name of Source Organism

	Priestia megaterium (6)
	Methanosarcina barkeri str. Fusaro (4)
	Escherichia coli (2)
	Escherichia coli K-12 (1)
	Priestia megaterium NBRC 15308 = ATCC 14581 (1)

Taxonomy

	Bacteria (9)
	Archaea (4)

Experimental Method

X-RAY DIFFRACTION (13)

Polymer Entity Type

	Protein (13)
	RNA (2)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (5)
	2.5 - 3.0 (6)
	3.0 - 3.5 (1)

Release Date

	2005 - 2009 (5)
	2010 - 2014 (1)
	2020 - 2024 (7)

Enzyme Classification Name

Ligases (13)

Symmetry Type

	Asymmetric (9)
	Cyclic (5)

SCOP Classification

	All beta proteins (1)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 13 of 13 Structures

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1ZJW \| pdb_00001zjw	Download File View File

Glutaminyl-tRNA synthetase complexed to glutamine and 2'deoxy A76 glutamine tRNA

Gruic-Sovulj, I., Uter, N., Bullock, T., Perona, J.J.

(2005) J Biological Chem 280: 23978-23986

Released	2005-06-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	Glutaminyl-tRNA synthetase (protein) Glutaminyl-tRNA (nucleic acid)
Unique Ligands	AMP, GLN, SO4

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2CIM \| pdb_00002cim	Download File View File

Crystal structure of Methanosarcina barkeri seryl-tRNA synthetase

Bilokapic, S., Maier, T., Ahel, D., Gruic-Sovulj, I., Soll, D., Weygand-Durasevic, I., Ban, N.

(2006) EMBO J 25: 2498

Released	2006-06-26
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Methanosarcina barkeri str. Fusaro
Macromolecule	SERYL-TRNA SYNTHETASE (protein)
Unique Ligands	CL, PT, ZN

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2CJ9 \| pdb_00002cj9	Download File View File

Crystal structure of Methanosarcina barkeri seryl-tRNA synthetase complexed with an analog of seryladenylate

Bilokapic, S., Maier, T., Ahel, D., Gruic-Sovulj, I., Soll, D., Weygand-Durasevic, I., Ban, N.

(2006) EMBO J 25: 2498

Released	2006-06-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Methanosarcina barkeri str. Fusaro
Macromolecule	SERYL-TRNA SYNTHETASE (protein)
Unique Ligands	CL, SSA, ZN

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2CJA \| pdb_00002cja	Download File View File

Crystal structure of Methanosarcina barkeri seryl-tRNA synthetase complexed with ATP

Bilokapic, S., Maier, T., Ahel, D., Gruic-Sovulj, I., Soll, D., Weygand-Durasevic, I., Ban, N.

(2006) EMBO J 25: 2498

Released	2006-06-26
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Methanosarcina barkeri str. Fusaro
Macromolecule	SERYL-TRNA SYNTHETASE (protein)
Unique Ligands	ATP, CL, MG, ZN

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2CJB \| pdb_00002cjb	Download File View File

Crystal structure of Methanosarcina barkeri seryl-tRNA synthetase complexed with serine

Bilokapic, S., Maier, T., Ahel, D., Gruic-Sovulj, I., Soll, D., Weygand-Durasevic, I., Ban, N.

(2006) EMBO J 25: 2498

Released	2006-06-26
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Methanosarcina barkeri str. Fusaro
Macromolecule	SERYL-TRNA SYNTHETASE (protein)
Unique Ligands	CL, SER, ZN

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4CQN \| pdb_00004cqn	Download File View File

Crystal structure of the E.coli LeuRS-tRNA complex with the non- cognate isoleucyl adenylate analogue

Palencia, A., Cusack, S., Cvetesic, N., Haslaz, I., Gruic-Sovulj, I.

(2014) EMBO J 33: 1639

Released	2014-07-02
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli Escherichia coli K-12
Macromolecule	LEUCINE--TRNA LIGASE (protein) ESCHERICHIA COLI TRNA-LEU UAA ISOACCEPTOR (nucleic acid)
Unique Ligands	ILA, MG, ZN

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8C8U \| pdb_00008c8u	Download File View File

Priestia megaterium mupirocin-resistant isoleucyl-tRNA synthetase 2 complexed with mupirocin

Brkic, A., Leibundgut, M., Jablonska, J., Zanki, V., Car, Z., Petrovic Perokovic, V., Gruic-Sovulj, I., Ban, N.

(2023) Nat Commun 14: 5498-5498

Released	2023-08-23
Method	X-RAY DIFFRACTION 1.901 Å
Organisms	Priestia megaterium
Macromolecule	Isoleucine--tRNA ligase (protein)
Unique Ligands	1PE, MRC, TLA, ZN

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8C8V \| pdb_00008c8v	Download File View File

Priestia megaterium mupirocin-resistant isoleucyl-tRNA synthetase 2 with a fully-resolved C-terminal tRNA-binding domain complexed with an isoleucyl-adenylate analogue

Brkic, A., Leibundgut, M., Jablonska, J., Zanki, V., Car, Z., Petrovic Perokovic, V., Ban, N., Gruic-Sovulj, I.

(2023) Nat Commun 14: 5498-5498

Released	2023-08-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Priestia megaterium NBRC 15308 = ATCC 14581
Macromolecule	Isoleucine--tRNA ligase (protein)
Unique Ligands	ILA, TAR, ZN

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8C8W \| pdb_00008c8w	Download File View File

Priestia megaterium mupirocin hyper-resistant HIGH motif mutant of type 2 isoleucyl-tRNA synthetase complexed with an isoleucyl-adenylate analogue

Brkic, A., Leibundgut, M., Jablonska, J., Zanki, V., Car, Z., Petrovic Perokovic, V., Ban, N., Gruic-Sovulj, I.

(2023) Nat Commun 14: 5498-5498

Released	2023-08-16
Method	X-RAY DIFFRACTION 2.29 Å
Organisms	Priestia megaterium
Macromolecule	Isoleucine--tRNA ligase (protein)
Unique Ligands	ILA, TAR, ZN

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8C9D \| pdb_00008c9d	Download File View File

Priestia megaterium W130Q mutant of type 2 isoleucyl-tRNA synthetase complexed with an isoleucyl-adenylate analogue

Brkic, A., Leibundgut, M., Jablonska, J., Zanki, V., Car, Z., Petrovic Perokovic, V., Ban, N., Gruic-Sovulj, I.

(2023) Nat Commun 14: 5498-5498

Released	2023-08-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Priestia megaterium
Macromolecule	Isoleucine--tRNA ligase (protein)
Unique Ligands	ILA, TAR, ZN

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8C9E \| pdb_00008c9e	Download File View File

Priestia megaterium mupirocin-sensitive isoleucyl-tRNA synthetase 1 complexed with an isoleucyl-adenylate analogue

Brkic, A., Leibundgut, M., Jablonska, J., Zanki, V., Car, Z., Petrovic Perokovic, V., Ban, N., Gruic-Sovulj, I.

(2023) Nat Commun 14: 5498-5498

Released	2023-08-16
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Priestia megaterium
Macromolecule	Isoleucine--tRNA ligase (protein)
Unique Ligands	CL, ILA, LI, NA, SO4, ZN

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8C9F \| pdb_00008c9f	Download File View File

Priestia megaterium inactive HIGH motif mutant of type1 isoleucyl-tRNA synthetase complexed with an isoleucyl-adenylate analogue.

Brkic, A., Leibundgut, M., Jablonska, J., Zanki, V., Car, Z., Petrovic Perokovic, V., Ban, N., Gruic-Sovulj, I.

(2023) Nat Commun 14: 5498-5498

Released	2023-08-16
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Priestia megaterium
Macromolecule	Isoleucine--tRNA ligase (protein)
Unique Ligands	CL, ILA, LI, NA, SO4, ZN

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8C9G \| pdb_00008c9g	Download File View File

Priestia megaterium mupirocin-sensitive isoleucyl-tRNA synthetase 1 complexed with mupirocin

Brkic, A., Leibundgut, M., Jablonska, J., Zanki, V., Car, Z., Petrovic Perokovic, V., Ban, N., Gruic-Sovulj, I.

(2023) Nat Commun 14: 5498-5498

Released	2023-08-23
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Priestia megaterium
Macromolecule	Isoleucine--tRNA ligase (protein)
Unique Ligands	CL, GOL, MRC, NA, ZN

1 to 13 of 13 Structures

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1ZJW | pdb_00001zjw

Glutaminyl-tRNA synthetase complexed to glutamine and 2'deoxy A76 glutamine tRNA

2CIM | pdb_00002cim

Crystal structure of Methanosarcina barkeri seryl-tRNA synthetase

2CJ9 | pdb_00002cj9

Crystal structure of Methanosarcina barkeri seryl-tRNA synthetase complexed with an analog of seryladenylate

2CJA | pdb_00002cja

Crystal structure of Methanosarcina barkeri seryl-tRNA synthetase complexed with ATP

2CJB | pdb_00002cjb

Crystal structure of Methanosarcina barkeri seryl-tRNA synthetase complexed with serine

4CQN | pdb_00004cqn

Crystal structure of the E.coli LeuRS-tRNA complex with the non- cognate isoleucyl adenylate analogue

8C8U | pdb_00008c8u

Priestia megaterium mupirocin-resistant isoleucyl-tRNA synthetase 2 complexed with mupirocin

8C8V | pdb_00008c8v

Priestia megaterium mupirocin-resistant isoleucyl-tRNA synthetase 2 with a fully-resolved C-terminal tRNA-binding domain complexed with an isoleucyl-adenylate analogue

8C8W | pdb_00008c8w

Priestia megaterium mupirocin hyper-resistant HIGH motif mutant of type 2 isoleucyl-tRNA synthetase complexed with an isoleucyl-adenylate analogue

8C9D | pdb_00008c9d

Priestia megaterium W130Q mutant of type 2 isoleucyl-tRNA synthetase complexed with an isoleucyl-adenylate analogue

8C9E | pdb_00008c9e

Priestia megaterium mupirocin-sensitive isoleucyl-tRNA synthetase 1 complexed with an isoleucyl-adenylate analogue

8C9F | pdb_00008c9f

Priestia megaterium inactive HIGH motif mutant of type1 isoleucyl-tRNA synthetase complexed with an isoleucyl-adenylate analogue.

8C9G | pdb_00008c9g

Priestia megaterium mupirocin-sensitive isoleucyl-tRNA synthetase 1 complexed with mupirocin

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1ZJW | pdb_00001zjw

2CIM | pdb_00002cim

2CJ9 | pdb_00002cj9

2CJA | pdb_00002cja

2CJB | pdb_00002cjb

4CQN | pdb_00004cqn

8C8U | pdb_00008c8u

8C8V | pdb_00008c8v

8C8W | pdb_00008c8w

8C9D | pdb_00008c9d

8C9E | pdb_00008c9e

8C9F | pdb_00008c9f

8C9G | pdb_00008c9g