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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Gehring, K."

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Search Summary

This query matches 103 Structures.

Refinements

Structure Determination Methodology

experimental (103)

Scientific Name of Source Organism

	Homo sapiens (35)
	Rattus norvegicus (16)
	Mus musculus (10)
	Escherichia coli (7)
	Mycobacterium tuberculosis (6)
	Influenza A virus (5)
	Respirovirus muris (5)
	synthetic construct (4)
	Aplysia californica (3)
	Leishmania tarentolae (3)

More...

Taxonomy

	Eukaryota (72)
	Bacteria (22)
	Riboviria (22)
	other sequences (4)
	Duplodnaviria (2)

Experimental Method

	X-RAY DIFFRACTION (100)
	SOLUTION NMR (2)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

	Protein (103)
	DNA (7)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (29)
	2.0 - 2.5 (43)
	2.5 - 3.0 (17)
	3.0 - 3.5 (6)

Release Date

	1995 - 1999 (10)
	2000 - 2004 (10)
	2005 - 2009 (11)
	2010 - 2014 (17)
	2015 - 2019 (24)
	2020 - 2024 (31)

Enzyme Classification Name

	Hydrolases (38)
	Transferases (16)
	Oxidoreductases (7)
	Ligases (3)
	Lyases (2)

Symmetry Type

	Asymmetric (77)
	Cyclic (24)
	Dihedral (3)

SCOP Classification

	All beta proteins (21)
	Alpha and beta proteins (a+b) (20)
	All alpha proteins (9)
	Artifacts (16)
	Alpha and beta proteins (a/b) (8)
	Coiled coil proteins (1)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 103 Structures

Page 1 of 5

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1CTN \| pdb_00001ctn	Download File View File

CRYSTAL STRUCTURE OF A BACTERIAL CHITINASE AT 2.3 ANGSTROMS RESOLUTION

Perrakis, A., Tews, I., Dauter, Z., Wilson, K.S., Vorgias, C.E.

(1994) Structure 2: 1169-1180

Released	1995-02-07
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Serratia marcescens
Macromolecule	CHITINASE A (protein)

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1DCS \| pdb_00001dcs	Download File View File

DEACETOXYCEPHALOSPORIN C SYNTHASE FROM S. CLAVULIGERUS

Valegard, K., Terwisscha Van Scheltinga, A.C., Lloyd, M.D., Hara, T., Ramaswamy, S., Perrakis, A., Thompson, A., Lee, H.J., Baldwin, J.E., Schofield, C.J., Hajdu, J., Andersson, I.

(1998) Nature 394: 805-809

Released	1999-06-08
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Streptomyces clavuligerus
Macromolecule	DEACETOXYCEPHALOSPORIN C SYNTHASE (protein)
Unique Ligands	SO4

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1DW9 \| pdb_00001dw9	Download File View File

Structure of cyanase reveals that a novel dimeric and decameric arrangement of subunits is required for formation of the enzyme active site

Walsh, M.A., Otwinowski, Z., Perrakis, A., Anderson, P.M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

(2000) Structure 8: 505

Released	2000-05-16
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Escherichia coli
Macromolecule	CYANATE LYASE (protein)
Unique Ligands	CL, SO4

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1DWK \| pdb_00001dwk	Download File View File

STRUCTURE OF CYANASE WITH THE DI-ANION OXALATE BOUND AT THE ENZYME ACTIVE SITE

Walsh, M.A., Otwinowski, Z., Perrakis, A., Anderson, P.M., Joachimiak, A.

(2000) Structure 8: 505

Released	2000-05-16
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Escherichia coli
Macromolecule	CYANATE HYDRATASE (protein)
Unique Ligands	OXL, SO4

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1E3M \| pdb_00001e3m	Download File View File

The crystal structure of E. coli MutS binding to DNA with a G:T mismatch

Lamers, M.H., Perrakis, A., Enzlin, J.H., Winterwerp, H.H.K., De Wind, N., Sixma, T.K.

(2000) Nature 407: 711

Released	2000-11-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	DNA MISMATCH REPAIR PROTEIN MUTS (protein) 5'-D(APGPCPTPGPCPCPAPGPGPCPAPCPCPAP GPTPGPTPCPAPGPCPGPTPCPCPTPAPT)-3' (nucleic acid) 5'-D(APTPAPGPGPAPCPGPCPTPGPAPCPAPCP TPGPGPTPGPCPTPTPGPGPCPAPGPCPT)-3' (nucleic acid)
Unique Ligands	ADP, MG

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1EPU \| pdb_00001epu	Download File View File

X-RAY crystal structure of neuronal SEC1 from squid

Bracher, A., Perrakis, A., Dresbach, T., Betz, H., Weissenhorn, W.

(2000) Structure 8: 685-694

Released	2000-08-09
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Doryteuthis pealeii
Macromolecule	S-SEC1 (protein)

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1NAW \| pdb_00001naw	Download File View File

ENOLPYRUVYL TRANSFERASE

Schoenbrunn, E., Sack, S., Eschenburg, S., Perrakis, A., Krekel, F., Amrhein, N., Mandelkow, E.

(1996) Structure 4: 1065-1075

Released	1997-07-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Enterobacter cloacae
Macromolecule	UDP-N-ACETYLGLUCOSAMINE 1-CARBOXYVINYL-TRANSFERASE (protein)
Unique Ligands	HAI

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1O9K \| pdb_00001o9k	Download File View File

Crystal structure of the retinoblastoma tumour suppressor protein bound to E2F peptide

Xiao, B., Spencer, J., Clements, A., Ali-Khan, N., Mittnacht, S., Broceno, C., Burghammer, M., Perrakis, A., Marmorstein, R., Gamblin, S.J.

(2003) Proc Natl Acad Sci U S A 100: 2363

Released	2003-03-06
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	RETINOBLASTOMA-ASSOCIATED PROTEIN (protein) TRANSCRIPTION FACTOR E2F1 (protein)

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1OH5 \| pdb_00001oh5	Download File View File

THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH A C:A MISMATCH

Natrajan, G., Lamers, M.H., Enzlin, J.H., Winterwerp, H.H.K., Perrakis, A., Sixma, T.K.

(2003) Nucleic Acids Res 31: 4814

Released	2003-08-08
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli synthetic construct
Macromolecule	DNA MISMATCH REPAIR PROTEIN MUTS (protein) 5'-D(APGPCPTPGPCPCPAPCPGP CPAPCPCPAPGPTPGPTPCPAPGPCPGPTP CPCPTPAPT)-3' (nucleic acid) 5'-D(APTPAPGPGPAPCPGPCPTP GPAPCPAPCPTPGPGPTPGPCPAPTPGPGP CPAPGPCPT)-3' (nucleic acid)
Unique Ligands	ADP, MG

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1OH6 \| pdb_00001oh6	Download File View File

THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH AN A:A MISMATCH

Natrajan, G., Lamers, M.H., Enzlin, J.H., Winterwerp, H.H.K., Perrakis, A., Sixma, T.K.

(2003) Nucleic Acids Res 31: 4814

Released	2003-08-08
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli synthetic construct
Macromolecule	DNA MISMATCH REPAIR PROTEIN MUTS (protein) 5'-D(APGPCPTPGPCPCPAPAPGP CPAPCPCPAPGPTPGPTPCPAPGPCPGPTP CPCPTPAPT)-3' (nucleic acid) 5'-D(APTPAPGPGPAPCPGPCPTP GPAPCPAPCPTPGPGPTPGPCPAPTPGPGP CPAPGPCPT)-3' (nucleic acid)
Unique Ligands	ADP, MG

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1OH7 \| pdb_00001oh7	Download File View File

THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH A G:G MISMATCH

Natrajan, G., Lamers, M.H., Enzlin, J.H., Winterwerp, H.H.K., Perrakis, A., Sixma, T.K.

(2003) Nucleic Acids Res 31: 4814

Released	2003-08-08
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli synthetic construct
Macromolecule	DNA MISMATCH REPAIR PROTEIN MUTS (protein) 5'-D(APGPCPTPGPCPCPAPGPGP CPAPCPCPAPGPTPGPTPCPAPGPCPGPTP CPCPTPAPT)-3' (nucleic acid) 5'-D(APTPAPGPGPAPCPGPCPTP GPAPCPAPCPTPGPGPTPGPCPGPTPGPGP CPAPGPCPT)-3' (nucleic acid)
Unique Ligands	ADP, MG

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1OH8 \| pdb_00001oh8	Download File View File

THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH AN UNPAIRED THYMIDINE

Natrajan, G., Lamers, M.H., Enzlin, J.H., Winterwerp, H.H.K., Perrakis, A., Sixma, T.K.

(2003) Nucleic Acids Res 31: 4814

Released	2003-08-08
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli synthetic construct
Macromolecule	DNA MISMATCH REPAIR PROTEIN MUTS (protein) 5'-D(APGPCPTPGPCPCPAPGPGP CPAPCPCPAPGPTPGPTPCPAPGPCPGPTPCPCP TPAPT)-3' (nucleic acid) 5'-D(APTPAPGPGPAPCPGPCPTP GPAPCPAPCPTPGPGPTPGPCPCPTPTPGPGPCP APGPCP*T)-3' (nucleic acid)
Unique Ligands	ADP, MG

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1QBA \| pdb_00001qba	Download File View File

BACTERIAL CHITOBIASE, GLYCOSYL HYDROLASE FAMILY 20

Tews, I., Perrakis, A., Oppenheim, A., Dauter, Z., Wilson, K.S., Vorgias, C.E.

(1996) Nat Struct Biol 3: 638-648

Released	1997-01-11
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Serratia marcescens
Macromolecule	CHITOBIASE (protein)
Unique Ligands	SO4

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1QBB \| pdb_00001qbb	Download File View File

BACTERIAL CHITOBIASE COMPLEXED WITH CHITOBIOSE (DINAG)

Tews, I., Perrakis, A., Oppenheim, A., Dauter, Z., Wilson, K.S., Vorgias, C.E.

(1996) Nat Struct Biol 3: 638-648

Released	1997-02-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Serratia marcescens
Macromolecule	CHITOBIASE (protein)
Unique Ligands	SO4
Unique branched monosaccharides	NAG

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1RXF \| pdb_00001rxf	Download File View File

DEACETOXYCEPHALOSPORIN C SYNTHASE COMPLEXED WITH FE(II)

Valegard, K., Terwisscha Van Scheltinga, A.C., Lloyd, M.D., Hara, T., Ramaswamy, S., Perrakis, A., Thompson, A., Lee, H.J., Baldwin, J.E., Schofield, C.J., Hajdu, J., Andersson, I.

(1998) Nature 394: 805-809

Released	1999-06-08
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Streptomyces clavuligerus
Macromolecule	DEACETOXYCEPHALOSPORIN C SYNTHASE (protein)
Unique Ligands	FE

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1RXG \| pdb_00001rxg	Download File View File

DEACETOXYCEPHALOSPORIN C SYNTHASE COMPLEXED WITH FE(II) AND 2-OXOGLUTARATE

Valegard, K., Terwisscha Van Scheltinga, A.C., Lloyd, M.D., Hara, T., Ramaswamy, S., Perrakis, A., Thompson, A., Lee, H.J., Baldwin, J.E., Shofield, C.J., Hajdu, J., Andersson, I.

(1998) Nature 394: 805-809

Released	1999-06-08
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Streptomyces clavuligerus
Macromolecule	DEACETOXYCEPHALOSPORIN C SYNTHASE (protein)
Unique Ligands	AKG, FE, SO4

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1TC3 \| pdb_00001tc3	Download File View File

TRANSPOSASE TC3A1-65 FROM CAENORHABDITIS ELEGANS

Van Pouderoyen, G., Ketting, R.F., Perrakis, A., Plasterk, R.H.A., Sixma, T.K.

(1997) EMBO J 16: 6044-6054

Released	1997-11-21
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Caenorhabditis elegans
Macromolecule	PROTEIN (TC3 TRANSPOSASE) (protein) DNA (5'-D(APGPGPGPGPGPGPGPTPCPCPTPAPTPAPGPA PAPCPTPT)-3') (nucleic acid) DNA (5'-D(APGPTPTPCPTPAPTPAPGPGPAPCPCPCPCPC PCPCP*T)-3') (nucleic acid)

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1U9A \| pdb_00001u9a	Download File View File

HUMAN UBIQUITIN-CONJUGATING ENZYME UBC9

Tong, H., Hateboer, G., Perrakis, A., Bernards, R., Sixma, T.K.

(1997) J Biological Chem 272: 21381-21387

Released	1997-05-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	UBIQUITIN-CONJUGATING ENZYME (protein)

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1U9B \| pdb_00001u9b	Download File View File

MURINE/HUMAN UBIQUITIN-CONJUGATING ENZYME UBC9

Tong, H., Hateboer, G., Perrakis, A., Bernards, R., Sixma, T.K.

(1997) J Biological Chem 272: 21381-21387

Released	1997-07-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	UBIQUITIN-CONJUGATING ENZYME E9 (protein)

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1VYB \| pdb_00001vyb	Download File View File

Endonuclease domain of human LINE1 ORF2p

Weichenrieder, O., Repanas, K., Perrakis, A.

(2004) Structure 12: 975-986

Released	2004-06-04
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	ORF2 CONTAINS A REVERSE TRANSCRIPTASE DOMAIN (protein)
Unique Ligands	GOL, SO3, SO4

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2CKL \| pdb_00002ckl	Download File View File

Ring1b-Bmi1 E3 catalytic domain structure

Buchwald, G., van der Stoop, P., Weichenrieder, O., Perrakis, A., van Lohuizen, M., Sixma, T.K.

(2006) EMBO J 25: 2465

Released	2006-05-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	POLYCOMB GROUP RING FINGER PROTEIN 4 (protein) UBIQUITIN LIGASE PROTEIN RING2 (protein)
Unique Ligands	IOD, ZN