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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Deng, L."

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Search Summary

This query matches 200 Structures.

Refinements

Structure Determination Methodology

experimental (200)

Scientific Name of Source Organism

	Homo sapiens (103)
	synthetic construct (41)
	Mus musculus (37)
	Bos taurus (13)
	Physeter macrocephalus (9)
	Rattus norvegicus (8)
	Xenopus tropicalis (7)
	Nostoc sp. PCC 7120 = FACHB-418 (6)
	uncultured cyanophage (6)
	Rous sarcoma virus (strain Schmidt-Ruppin) (5)

More...

Taxonomy

	Eukaryota (147)
	other sequences (41)
	Bacteria (33)
	Riboviria (11)
	unclassified bacterial viruses (6)
	Duplodnaviria (3)

Experimental Method

	ELECTRON MICROSCOPY (108)
	X-RAY DIFFRACTION (73)
	SOLUTION NMR (19)

Polymer Entity Type

	Protein (199)
	RNA (8)
	DNA (6)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (20)
	2.0 - 2.5 (31)
	2.5 - 3.0 (50)
	3.0 - 3.5 (46)
	3.5 - 4.0 (23)
	4.0 - 4.5 (4)
	> 4.5 (1)

Release Date

	1995 - 1999 (22)
	2000 - 2004 (5)
	2005 - 2009 (9)
	2010 - 2014 (17)
	2015 - 2019 (35)
	2020 - 2024 (98)
	2025 - 2029 (14)

Enzyme Classification Name

	Hydrolases (66)
	Transferases (17)
	Oxidoreductases (12)
	Lyases (2)

Membrane Protein Annotation

	PDBTM (87)
	mpstruc (57)
	MemProtMD (50)
	OPM (42)

Symmetry Type

	Asymmetric (142)
	Cyclic (49)
	Dihedral (8)
	Icosahedral (1)

SCOP Classification

	All alpha proteins (25)
	All beta proteins (9)
	Alpha and beta proteins (a+b) (9)
	Alpha and beta proteins (a/b) (14)
	Artifacts (6)
	Membrane and cell surface proteins and peptides (1)

AllSelected

1 to 25 of 200 Structures

Page 1 of 8

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1A5V \| pdb_00001a5v	Download File View File

ASV INTEGRASE CORE DOMAIN WITH HIV-1 INTEGRASE INHIBITOR Y3 AND MN CATION

Lubkowski, J., Yang, F., Alexandratos, J., Wlodawer, A.

(1998) Proc Natl Acad Sci U S A 95: 4831-4836

Released	1998-05-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Rous sarcoma virus (strain Schmidt-Ruppin)
Macromolecule	INTEGRASE (protein)
Unique Ligands	MN, Y3

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1A5W \| pdb_00001a5w	Download File View File

ASV INTEGRASE CORE DOMAIN WITH HIV-1 INTEGRASE INHIBITOR Y3

Lubkowski, J., Yang, F., Alexandratos, J., Wlodawer, A.

(1998) Proc Natl Acad Sci U S A 95: 4831-4836

Released	1998-05-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Rous sarcoma virus (strain Schmidt-Ruppin)
Macromolecule	INTEGRASE (protein)
Unique Ligands	Y3

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1A5X \| pdb_00001a5x	Download File View File

ASV INTEGRASE CORE DOMAIN WITH HIV-1 INTEGRASE INHIBITOR Y3

Lubkowski, J., Yang, F., Alexandratos, J., Wlodawer, A.

(1998) Proc Natl Acad Sci U S A 95: 4831-4836

Released	1998-05-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Rous sarcoma virus (strain Schmidt-Ruppin)
Macromolecule	INTEGRASE (protein)
Unique Ligands	Y3

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1BG8 \| pdb_00001bg8	Download File View File

HDEA FROM ESCHERICHIA COLI

Yang, F., Gustafson, K.R., Boyd, M.R., Wlodawer, A.

(1998) Nat Struct Biol 5: 763-764

Released	1998-09-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	HDEA (protein)

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1C5E \| pdb_00001c5e	Download File View File

BACTERIOPHAGE LAMBDA HEAD PROTEIN D

Yang, F., Forrer, P., Dauter, Z., Pluckthun, A., Wlodawer, A.

(2000) Nat Struct Biol 7: 230-237

Released	2000-03-08
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Lambdavirus lambda
Macromolecule	HEAD DECORATION PROTEIN (protein)
Unique Ligands	GOL

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1CXQ \| pdb_00001cxq	Download File View File

ATOMIC RESOLUTION ASV INTEGRASE CORE DOMAIN FROM AMMONIUM SULFATE

Lubkowski, J., Dauter, Z., Yang, F., Alexandratos, J., Merkel, G., Skalka, A.M., Wlodawer, A.

(1999) Biochemistry 38: 13512-13522

Released	1999-09-08
Method	X-RAY DIFFRACTION 1.02 Å
Organisms	Avian sarcoma virus
Macromolecule	AVIAN SARCOMA VIRUS INTEGRASE (protein)
Unique Ligands	EPE, GOL

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1CXU \| pdb_00001cxu	Download File View File

1.42A RESOLUTION ASV INTEGRASE CORE DOMAIN FROM CITRATE

Lubkowski, J., Dauter, Z., Yang, F., Alexandratos, J., Wlodawer, A.

(1999) Biochemistry 38: 13512-13522

Released	1999-09-08
Method	X-RAY DIFFRACTION 1.42 Å
Organisms	Avian sarcoma virus
Macromolecule	PROTEIN (AVIAN SARCOMA VIRUS INTEGRASE) (protein)
Unique Ligands	CIT, GOL

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1CZ9 \| pdb_00001cz9	Download File View File

ATOMIC RESOLUTION ASV INTEGRASE CORE DOMAIN (D64N) FROM CITRATE

Lubkowski, J., Dauter, Z., Yang, F., Alexandratos, J., Merkel, G., Skalka, A.M., Wlodawer, A.

(1999) Biochemistry 38: 13512-13522

Released	1999-09-08
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Avian sarcoma virus
Macromolecule	AVIAN SARCOMA VIRUS INTEGRASE (protein)
Unique Ligands	CIT, SO4

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1CZB \| pdb_00001czb	Download File View File

ATOMIC RESOLUTION ASV INTEGRASE CORE DOMAIN FROM HEPES

Lubkowski, J., Dauter, Z., Yang, F., Alexandratos, J., Merkel, G., Skalka, A.M., Wlodawer, A.

(1999) Biochemistry 38: 13512-13522

Released	1999-09-08
Method	X-RAY DIFFRACTION 1.06 Å
Organisms	Avian sarcoma virus
Macromolecule	AVIAN SARCOMA VIRUS INTEGRASE (protein)
Unique Ligands	EPE

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1GFL \| pdb_00001gfl	Download File View File

STRUCTURE OF GREEN FLUORESCENT PROTEIN

Yang, F., Moss, L.G., Phillips Jr., G.N.

(1996) Nat Biotechnol 14: 1246-1251

Released	1997-01-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Aequorea victoria
Macromolecule	GREEN FLUORESCENT PROTEIN (protein)

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1NDG \| pdb_00001ndg	Download File View File

Crystal structure of Fab fragment of antibody HyHEL-8 complexed with its antigen lysozyme

Mariuzza, R.A., Li, Y., Li, H., Yang, F., Smith-Gill, S.J.

(2003) Nat Struct Biol 10: 482-488

Released	2003-06-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Gallus gallus Mus musculus
Macromolecule	Lysozyme C (protein) antibody kappa light chain (protein) immunoglobulin gamma 1 chain (protein)
Unique Ligands	ACY

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1R58 \| pdb_00001r58	Download File View File

Crystal Structure of MetAP2 complexed with A357300

Sheppard, G.S., Wang, J., Kawai, M., BaMaung, N.Y., Craig, R.A., Ericken, S.A., Lynch, L., Patel, J., Yang, F., Searle, X.B., Lou, P., Park, C., Kim, K.H., Henkin, J., Lesniewski, R.

(2004) Bioorg Med Chem Lett 14: 865-868

Released	2004-10-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Methionine aminopeptidase 2 (protein)
Unique Ligands	AO5, MN

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1R5G \| pdb_00001r5g	Download File View File

Crystal Structure of MetAP2 complexed with A311263

Sheppard, G.S., Wang, J., Kawai, M., BaMaung, N.Y., Craig, R.A., Erickson, S.A., Lynch, L., Patel, J., Yang, F., Searle, X.B., Lou, P., Park, C., Kim, K.H., Henkin, J., Lesniewski, R.

(2004) Bioorg Med Chem Lett 14: 865-868

Released	2004-10-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Methionine aminopeptidase 2 (protein)
Unique Ligands	AO1, MN

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1R5H \| pdb_00001r5h	Download File View File

Crystal Structure of MetAP2 complexed with A320282

Sheppard, G.S., Wang, J., Kawai, M., BaMaung, N.Y., Craig, R.A., Erickson, S.A., Lynch, L., Patel, J., Yang, F., Searle, X.B., Lou, P., Park, C., Kim, K.H., Henkin, J., Lesniewski, R.

(2004) Bioorg Med Chem Lett 14: 865-868

Released	2004-10-12
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Methionine aminopeptidase 2 (protein)
Unique Ligands	AO2, MN

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1SPE \| pdb_00001spe	Download File View File

SPERM WHALE NATIVE CO MYOGLOBIN AT PH 4.0, TEMP 4C

Yang, F., Phillips Jr., G.N.

(1996) J Mol Biology 256: 762-774

Released	1996-03-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Physeter macrocephalus
Macromolecule	MYOGLOBIN (protein)
Unique Ligands	CMO, HEM, SO4

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1VSK \| pdb_00001vsk	Download File View File

ASV INTEGRASE CORE DOMAIN D64N MUTATION IN CITRATE BUFFER PH 6.0

Lubkowski, J., Yang, F., Alexandratos, J., Wlodawer, A.

(1998) J Biological Chem 273: 32685-32689

Released	1998-12-02
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Rous sarcoma virus - Schmidt-Ruppin B
Macromolecule	INTEGRASE (protein)

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1VSL \| pdb_00001vsl	Download File View File

ASV INTEGRASE CORE DOMAIN D64N MUTATION WITH ZINC CATION

Lubkowski, J., Yang, F., Alexandratos, J., Wlodawer, A.

(1998) J Biological Chem 273: 32685-32689

Released	1998-09-23
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Rous sarcoma virus (strain Schmidt-Ruppin)
Macromolecule	PROTEIN (INTEGRASE) (protein)
Unique Ligands	ZN