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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Cho, Y."

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Search Summary

This query matches 122 Structures.

Refinements

Structure Determination Methodology

experimental (122)

Scientific Name of Source Organism

	Homo sapiens (46)
	synthetic construct (13)
	Methanocaldococcus jannaschii (8)
	Mus musculus (8)
	Archaeoglobus fulgidus (5)
	Bacillus subtilis subsp. subtilis str. 168 (5)
	Escherichia coli K-12 (5)
	Pseudomonas aeruginosa PAO1 (5)
	Xenopus laevis (5)
	Ancylostoma ceylanicum (3)

More...

Taxonomy

	Eukaryota (73)
	Bacteria (27)
	Archaea (21)
	other sequences (13)
	Eukaryota (eukaryotes) (1)
	Monodnaviria (1)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (97)
	ELECTRON MICROSCOPY (23)
	SOLUTION NMR (2)

Polymer Entity Type

	Protein (122)
	DNA (17)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (21)
	2.0 - 2.5 (33)
	2.5 - 3.0 (25)
	3.0 - 3.5 (17)
	3.5 - 4.0 (7)
	4.0 - 4.5 (7)
	> 4.5 (7)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (10)
	2000 - 2004 (17)
	2005 - 2009 (21)
	2010 - 2014 (22)
	2015 - 2019 (13)
	2020 - 2024 (33)
	2025 - 2029 (5)

Enzyme Classification Name

	Hydrolases (35)
	Transferases (19)
	Isomerases (13)
	Lyases (8)
	Ligases (4)
	Oxidoreductases (4)

Membrane Protein Annotation

	PDBTM (12)
	mpstruc (8)
	OPM (6)
	MemProtMD (4)

Symmetry Type

	Asymmetric (70)
	Cyclic (39)
	Dihedral (16)
	Tetrahedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (20)
	Alpha and beta proteins (a/b) (27)
	All alpha proteins (11)
	Artifacts (11)
	All beta proteins (4)
	Coiled coil proteins (1)
	Small proteins (2)

AllSelected

1 to 25 of 122 Structures

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1A76 \| pdb_00001a76	Download File View File

FLAP ENDONUCLEASE-1 FROM METHANOCOCCUS JANNASCHII

Hwang, K.Y., Baek, K., Kim, H., Cho, Y.

(1998) Nat Struct Biol 5: 707-713

Released	1999-08-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	FLAP ENDONUCLEASE-1 PROTEIN (protein)
Unique Ligands	MN

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1A77 \| pdb_00001a77	Download File View File

FLAP ENDONUCLEASE-1 FROM METHANOCOCCUS JANNASCHII

Hwang, K.Y., Baek, K., Kim, H., Cho, Y.

(1998) Nat Struct Biol 5: 707-713

Released	1999-08-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	FLAP ENDONUCLEASE-1 PROTEIN (protein)
Unique Ligands	MG

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1AD6 \| pdb_00001ad6	Download File View File

DOMAIN A OF HUMAN RETINOBLASTOMA TUMOR SUPPRESSOR

Kim, H.Y., Cho, Y.

(1997) Nat Struct Biol 4: 390-395

Released	1998-08-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	RETINOBLASTOMA TUMOR SUPPRESSOR (protein)

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1B73 \| pdb_00001b73	Download File View File

GLUTAMATE RACEMASE FROM AQUIFEX PYROPHILUS

Hwang, K.Y., Cho, C.S., Kim, S.S., Yu, Y.G., Cho, Y.

(1999) Nat Struct Biol 6: 422-426

Released	1999-01-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Aquifex pyrophilus
Macromolecule	GLUTAMATE RACEMASE (protein)

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1B74 \| pdb_00001b74	Download File View File

GLUTAMATE RACEMASE FROM AQUIFEX PYROPHILUS

Hwang, K.Y., Cho, C.S., Kim, S.S., Yu, Y.G., Cho, Y.

(1999) Nat Struct Biol 6: 422-426

Released	2000-01-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Aquifex pyrophilus
Macromolecule	GLUTAMATE RACEMASE (protein)
Unique Ligands	DGN

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1B78 \| pdb_00001b78	Download File View File

STRUCTURE-BASED IDENTIFICATION OF THE BIOCHEMICAL FUNCTION OF A HYPOTHETICAL PROTEIN FROM METHANOCOCCUS JANNASCHII:MJ0226

Hwang, K.Y., Chung, J.H., Han, Y.S., Kim, S.H., Cho, Y.

(1999) Nat Struct Biol 6: 691-696

Released	2000-01-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	PYROPHOSPHATASE (protein)

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1B8P \| pdb_00001b8p	Download File View File

MALATE DEHYDROGENASE FROM AQUASPIRILLUM ARCTICUM

Kim, S.Y., Hwang, K.Y., Kim, S.-H., Han, Y.S., Cho, Y.

(1999) J Biological Chem 274: 11761-11767

Released	1999-07-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Aquaspirillum arcticum
Macromolecule	PROTEIN (MALATE DEHYDROGENASE) (protein)

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1B8U \| pdb_00001b8u	Download File View File

MALATE DEHYDROGENASE FROM AQUASPIRILLUM ARCTICUM

Kim, S.Y., Hwang, K.Y., Kim, S.-H., Han, Y.S., Cho, Y.

(1999) J Biological Chem 274: 11761-11767

Released	1999-07-09
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Aquaspirillum arcticum
Macromolecule	PROTEIN (MALATE DEHYDROGENASE) (protein)
Unique Ligands	NAD, OAA

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1B8V \| pdb_00001b8v	Download File View File

Malate dehydrogenase from Aquaspirillum arcticum

Kim, S.Y., Hwang, K.Y., Kim, S.H., Han, Y.S., Cho, Y.

(1999) J Biological Chem 274: 11761-11767

Released	1999-07-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Aquaspirillum arcticum
Macromolecule	PROTEIN (MALATE DEHYDROGENASE) (protein)
Unique Ligands	NAD

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1COJ \| pdb_00001coj	Download File View File

FE-SOD FROM AQUIFEX PYROPHILUS, A HYPERTHERMOPHILIC BACTERIUM

Lim, J.H., Yu, Y.G., Kim, S.-H., Cho, S.-J., Ahn, B.Y., Han, Y.S., Cho, Y.

(1997) J Mol Biology 270: 259-274

Released	1999-06-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Aquifex pyrophilus
Macromolecule	PROTEIN (SUPEROXIDE DISMUTASE) (protein)
Unique Ligands	FE

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1EFE \| pdb_00001efe	Download File View File

AN ACTIVE MINI-PROINSULIN, M2PI

Cho, Y., Chang, S.G., Choi, K.D., Shin, H., Ahn, B., Kim, K.S.

(2000) J Biochem Mol Biol 33: 120-125

Released	2000-03-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	MINI-PROINSULIN (protein)

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1GH6 \| pdb_00001gh6	Download File View File

RETINOBLASTOMA POCKET COMPLEXED WITH SV40 LARGE T ANTIGEN

Kim, H.Y., Cho, Y.

(2001) EMBO J 20: 295-304

Released	2001-11-15
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Betapolyomavirus macacae Homo sapiens
Macromolecule	Large T antigen (protein) Retinoblastoma-associated protein (protein)

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1M2G \| pdb_00001m2g	Download File View File

Sir2 homologue-ADP ribose complex

Chang, J., Cho, Y.

(2002) J Biological Chem 277: 34489-34498

Released	2003-04-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	Silent Information Regulator 2 (protein)
Unique Ligands	APR, ZN

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1M2H \| pdb_00001m2h	Download File View File

Sir2 homologue S24A mutant-ADP ribose complex

Chang, J., Cho, Y.

(2002) J Biological Chem 277: 34489-34498

Released	2003-04-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	Silent Information Regulator 2 (protein)
Unique Ligands	APR, ZN

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1M2J \| pdb_00001m2j	Download File View File

Sir2 homologue H80N mutant-ADP ribose complex

Chang, J., Cho, Y.

(2002) J Biological Chem 277: 34489-34498

Released	2003-04-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	Silent Information Regulator 2 (protein)
Unique Ligands	APR, ZN

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1M2K \| pdb_00001m2k	Download File View File

Sir2 homologue F159A mutant-ADP ribose complex

Chang, J., Cho, Y.

(2002) J Biological Chem 277: 34489-34498

Released	2003-04-08
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	Silent Information Regulator 2 (protein)
Unique Ligands	APR, ZN

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1M2N \| pdb_00001m2n	Download File View File

Sir2 homologues (D102G/F159A/R170A) mutant-2'-O-acetyl ADP ribose complex

Chang, J., Cho, Y.

(2003) J Biological Chem 277: 34489-34498

Released	2003-04-08
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	Silent Information Regulator 2 (protein)
Unique Ligands	OAD, ZN

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1N4M \| pdb_00001n4m	Download File View File

Structure of Rb tumor suppressor bound to the transactivation domain of E2F-2

Lee, C., Chang, J.H., Lee, H.S., Cho, Y.

(2002) Genes Dev 16: 3199-3212

Released	2003-01-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Retinoblastoma Pocket (protein) Transcription factor E2F2 (protein)

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1N6A \| pdb_00001n6a	Download File View File

Structure of SET7/9

Kwon, T.W., Chang, J.H., Kwak, E., Lee, C.W., Joachimiak, A., Kim, Y.C., Lee, J., Cho, Y.

(2003) EMBO J 22: 292-303

Released	2003-02-04
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	SET domain-containing protein 7 (protein)
Unique Ligands	SAM

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1N6C \| pdb_00001n6c	Download File View File

Structure of SET7/9

Kwon, T.W., Chang, J.H., Cho, Y.

(2003) EMBO J 22: 292-303

Released	2003-02-04
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	SET domain-containing protein 7 (protein)
Unique Ligands	SAM

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1NH7 \| pdb_00001nh7	Download File View File

ATP PHOSPHORIBOSYLTRANSFERASE (ATP-PRTASE) FROM MYCOBACTERIUM TUBERCULOSIS

Cho, Y., Sharma, V., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC)

(2003) J Biological Chem 278: 8333

Released	2003-02-11
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP Phosphoribosyltransferase (protein)
Unique Ligands	MG, SO4

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1NH8 \| pdb_00001nh8	Download File View File

ATP PHOSPHORIBOSYLTRANSFERASE (ATP-PRTASE) FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH AMP AND HISTIDINE

Cho, Y., Sharma, V., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC)

(2003) J Biological Chem 278: 8333

Released	2003-02-11
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP Phosphoribosyltransferase (protein)
Unique Ligands	AMP, HIS, SO4

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1R6L \| pdb_00001r6l	Download File View File

Crystal Structure Of The tRNA Processing Enzyme Rnase pH From Pseudomonas Aeruginosa

Choi, J.M., Park, E.Y., Kim, J.H., Chang, S.K., Cho, Y.

(2004) J Biological Chem 279: 755-764

Released	2004-02-17
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Ribonuclease PH (protein)
Unique Ligands	NHE, SO4

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1R6M \| pdb_00001r6m	Download File View File

Crystal Structure Of The tRNA Processing Enzyme Rnase pH From Pseudomonas Aeruginosa In Complex With Phosphate

Choi, J.M., Park, E.Y., Kim, J.H., Chang, S.K., Cho, Y.

(2004) J Biological Chem 279: 755-764

Released	2004-02-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Ribonuclease PH (protein)
Unique Ligands	PO4

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1TSR \| pdb_00001tsr	Download File View File

P53 CORE DOMAIN IN COMPLEX WITH DNA

Cho, Y., Gorina, S., Jeffrey, P., Pavletich, N.

(1994) Science 265: 346-355

Released	1996-01-29
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (P53 TUMOR SUPPRESSOR) (protein) DNA (5'-D(APTPAPAPTPTPGPGPGPCPAPAPGPTPCPTPA PGPGPAPA)-3') (nucleic acid) DNA (5'-D(TPTPTPCPCPTPAPGPAPCPTPTPGPCPCPCPA PAPTPTPA)-3') (nucleic acid)
Unique Ligands	ZN

1 to 25 of 122 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1A76 | pdb_00001a76

1A77 | pdb_00001a77

1AD6 | pdb_00001ad6

1B73 | pdb_00001b73

1B74 | pdb_00001b74

1B78 | pdb_00001b78

1B8P | pdb_00001b8p

1B8U | pdb_00001b8u

1B8V | pdb_00001b8v

1COJ | pdb_00001coj

1EFE | pdb_00001efe

1GH6 | pdb_00001gh6

1M2G | pdb_00001m2g

1M2H | pdb_00001m2h

1M2J | pdb_00001m2j

1M2K | pdb_00001m2k

1M2N | pdb_00001m2n

1N4M | pdb_00001n4m

1N6A | pdb_00001n6a

1N6C | pdb_00001n6c

1NH7 | pdb_00001nh7

1NH8 | pdb_00001nh8

1R6L | pdb_00001r6l

1R6M | pdb_00001r6m

1TSR | pdb_00001tsr